BAC Information

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BAC

Clone NameMSMg01-543B03
Chromosome9 (Build37)
Map Location 86,472,815 - 86,473,296
singlet/doubletsinglet
Overlap genenone
Upstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2
Downstream geneMod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543B03.T7 (MSMg01no543_b03.b1)MSMg01-543B03.TJ (MSMg01no543_b03.g1)
ACCAG608694AG608695
length755746
length of high quality
(start - end)
667 (53 - 719)497 (83 - 579)
definitionCHROMAT_FILE: MSMg01no543_b03.b1 PHD_FILE: MSMg01no543_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:19 2005CHROMAT_FILE: MSMg01no543_b03.g1 PHD_FILE: MSMg01no543_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTATCTATTACTGGATTGCAAGCACCCTGAAGCAGGC
TTAACACTGCAAGCAGCTCACAGTTGCTGTGAGGCAGGAATCTGGGAACT
TAGTTGGGTAAGTCTGCTTTATAAATCTCTTCTTAGATTACAGTAAAGAT
GTCTTCAGAGGCTCAATGCATCTAGAGGCTCTGTGAGGCTAACAGGGCTA
TGTCCAAGATGGTGAACTCATCTGGACATCAATGGGAACATCTATTCCTC
ACAGGGCCTTGGCTGGATTGTCTTCACGTCATCAGGTGATAGCTATAAAT
TAAGTAATCCATGACACAGTATTCATCACCCACTGTGACTTTATATATGA
CTATTCTCAGAAGTCACTGTCACATGGCTTTGTTCTGTATGTGAGAAGTT
CCTAACTCCTCTCACACTAAAGAGCAAAAGACATTAAGCCCCATCTCTTC
AAGGGAGTAATGTCGGAGAACATGTGAAGATAGTGTCAAACTATCCCACA
AGGAATTGAATGACACCGAGAAGACAGGACTATGGTTTTCCAATTTTTTA
AACTATATTTATTTTATTTGTATGTGATATGGATGTGTGTGCTCATATGG
CCACAGTTCGTGGATAGCAGTCAGCAGACAATGAGCGAGACTCTAGTCGT
GGCTTCTATCATGAGGGCCCTGGGGATGACACTCAGGTGGTCAGCCTTGG
GTGCN
TTTTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTTTATAAGCAGAGC
CTGGACCAGCTTAAGCTGTAACCCAGCCCTGACCCACTGTAAATCCCACT
GAAGTTTCACAGCCTCCCCGCCCAACTCCATAAGAAATGGCATGGCGTAT
TCACGTTTAGGAGAAAACATTTTTCTCTTTGAGAAAAAAAAGTTCGCATG
AAGGTGTGATGCTTTACTGAGCAGAGACAAAGTGCTTGCCAGAGTGGCAA
ATTTGCCCTGCAAGACAAAACGTAGATTTATCATAAACATAGAGTATAAA
GAATTCAGTGGTCCAGCATGCTGGAGGGTGGCTCTGAAGTCCACCCTCAG
AGGAGGAGCTGTTGGCGTAAGATGGCTGCCGAGAGAGGAGGAGACAGTTT
TCTTTAACTGTGCCCGGCTAGGTCGGCCATTTTTCAGAGCAGGCTCTACA
CCGAAGAGTGTTTGGGCAACAGAGTTGGGCTTGAGTGGGGTGGGCAGGTG
GTGGATCTAGGAGGAGTTGGAGGAGGAGGNNNNNTNTNTNNNNNTTTNNN
TGTTNTNTNTTTTTGTTTTTTTGGNTTTTTTTTTTTTTTTTTTTTTNNGG
TGTTTTTGGGGTTTTTGTTTTTTTTTTGTTTGNTTTTTTTGTNGTTGTTG
NGTTTTTTTGTTTTTGTTGGTTGTTTTGTGTGTGTTGTCTTGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_b03.g1 MSMg01no543_b03.g1 CHROMAT_FILE:
MSMg01no543_b03.g1 PHD_FILE: MSMg01no543_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:19 2005
         (497 letters)



>mm_chr9_86472815_86473714
          Length = 900

 Score =  843 bits (436), Expect = 0.0
 Identities = 470/482 (97%), Gaps = 3/482 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttttataagcagagcctggaccagcttaagctgtaacccagccctgacccactgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgcttttataagcagagcctggaccagcttaagctgtaacccagccctgacccactgtaa 423

                                                                       
Query: 61  atcccactgaagtttcacagcctccccgcccaactccataagaaatggcatggcgtattc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 422 atcccactgaagtttcacagcctccctgcccaactccataagaaatggcatggcgtactc 363

                                                                       
Query: 121 acgtttaggagaaaacatt--tttctctttgag-aaaaaaaagttcgcatgaaggtgtga 177
           ||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||
Sbjct: 362 acgattaggagaaaacatttctttctctttgagaaaaaaaaagttcgcatgaaggtgtga 303

                                                                       
Query: 178 tgctttactgagcagagacaaagtgcttgccagagtggcaaatttgccctgcaagacaaa 237
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 302 tgctttactgagcagggacaaagtgcttgccagagtggcaaatctgccctgcaagacaaa 243

                                                                       
Query: 238 acgtagatttatcataaacatagagtataaagaattcagtggtccagcatgctggagggt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acgtagatttatcataaacatagagtataaagaattcagtggtccagcatgctggagggt 183

                                                                       
Query: 298 ggctctgaagtccaccctcagaggaggagctgttggcgtaagatggctgccgagagagga 357
           ||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct: 182 ggctctggagtccaccctcagaggaggagctgttggcatatgatggctgctgagagagga 123

                                                                       
Query: 358 ggagacagttttctttaactgtgcccggctaggtcggccatttttcagagcaggctctac 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggagacagttttctttaactgtgcccggctaggtcggccatttttcagagcaggctctac 63

                                                                       
Query: 418 accgaagagtgtttgggcaacagagttgggcttgagtggggtgggcaggtggtggatcta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  accgaagagtgtttgggcaacagagttgggcttgagtggggtgggcaggtggtggatcta 3

             
Query: 478 gg 479
           ||
Sbjct: 2   gg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 900
Length adjustment: 10
Effective length of query: 487
Effective length of database: 890
Effective search space:   433430
Effective search space used:   433430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)