Query= MSMg01no543_c18.b1 MSMg01no543_c18.b1 CHROMAT_FILE:
MSMg01no543_c18.b1 PHD_FILE: MSMg01no543_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:27 2005
(703 letters)
>mm_chr9_44413580_44414682
Length = 1103
Score = 1307 bits (676), Expect = 0.0
Identities = 694/700 (99%)
Strand = Plus / Minus
Query: 4 ggaattctcaaaatttggtaaataaaatattactaaggactagtaagtataagtccaact 63
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 903 ggaattctcaaaatttggtaaataaaatattactaaggacttgtaagtataagtccaact 844
Query: 64 ccttcagttttattttgtaacccccttacatttcactggcacccgaaacactagcttaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ccttcagttttattttgtaacccccttacatttcactggcacccgaaacactagcttaat 784
Query: 124 tagtactggttatctttgcctcacaccaagtatcccaaatccataatttagaagtcaaaa 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 783 tagtactggttatctttgcctcaaaccaagtatcccaaatccataatttagaagtcaaaa 724
Query: 184 gatatctcaagttaaatacatcaacttgctcacaaatgcttctatcacattaaattgctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 723 gatatctcaagttaaatacatcaacttgctcacaaatgcttctatcacattaaattgttt 664
Query: 244 attttttatcttaataggtattttctgtattgacagcatatgatcaacagtatcaggtcc 303
|||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 663 atttgttatctcaataggtattttctgtattgacagcatacgatcaacagtatcaggtcc 604
Query: 304 gtcaaacaggaaggcttactgtttgtacagcactaagaggatgaagggggcaacctctga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtcaaacaggaaggcttactgtttgtacagcactaagaggatgaagggggcaacctctga 544
Query: 364 atcctaaccgacaccatcagtactgtcaatcaagcacagtaaaacctcctagcgccttaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atcctaaccgacaccatcagtactgtcaatcaagcacagtaaaacctcctagcgccttaa 484
Query: 424 acccagagacttcgataactgctccctccagaaacggatacctgcactgcagctttatgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acccagagacttcgataactgctccctccagaaacggatacctgcactgcagctttatgg 424
Query: 484 ctcagtgggaaatttttcgtcctaccccttcccaatttagatttgcaagttatattccta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctcagtgggaaatttttcgtcctaccccttcccaatttagatttgcaagttatattccta 364
Query: 544 aaacaaaaccacgaaggaacataagacttagttgggaggagcccctggcagagttaatta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaacaaaaccacgaaggaacataagacttagttgggaggagcccctggcagagttaatta 304
Query: 604 cagcagggcccagaccgtggttagcaattgacagttttcacacctaaaacagtcccataa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cagcagggcccagaccgtggttagcaattgacagttttcacacctaaaacagtcccataa 244
Query: 664 gctccaacaagggcttttgtttgcaaatacagggcgattt 703
||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gctccaacaagggcttttgtttgcaaatacagggcgattt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no543_c18.g1 MSMg01no543_c18.g1 CHROMAT_FILE:
MSMg01no543_c18.g1 PHD_FILE: MSMg01no543_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:27 2005
(680 letters)
>mm_chr9_44394555_44395634
Length = 1080
Score = 1263 bits (653), Expect = 0.0
Identities = 674/681 (98%), Gaps = 2/681 (0%)
Strand = Plus / Plus
Query: 1 ctccctgggcacacagctaaggactgtcccttctgcagaattcatcagtagctaattgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccctgggcacacagctaaggactgtcccttctgcagaattcatcagtagctaattgct 260
Query: 61 cagcagggaggcttagagtcctttaaaccctttcccaatctatgatcaactgccaacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcagggaggcttagagtcctttaaaccctttcccaatctatgatcaactgccaacagg 320
Query: 121 cccaggcttgtggagatacactggaggcagccccagctgctctgaggtcatgactgcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaggcttgtggagatacactggaggcagccccagctgctctgaggtcatgactgcatg 380
Query: 181 ggccatacctgcccagaagacagcatctcttctcccatcctctgggtctctcgtgttgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ggccatacctgcccagaagacagcatctcttctcccatcctctgggtctctcgtgctgct 440
Query: 241 gccaccccttgtccactgtcccctgagcctgagacgggagggtataaatgtcctgtttca 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gccaccccttgtccactgtcccctgagcctgagacgggagggtataaatgccctgtttca 500
Query: 301 tactgagcacttggccgccacttacaaactaactcaggatcctatccgtgctgcagccaa 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactgagcactcggccgccacttacaaactaactcaggatcctatccgtgctgcagccaa 560
Query: 361 gcttcagcaatgagacagacactgggcttcagccaatcacaggcggccaactgatgagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttcagcaatgagacagacactgggcttcagccaatcacaggcggccaactgatgagac 620
Query: 421 catggccatagaaagacaaatgcctctactagcctgctcaggttaggcaaacaatcactg 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catggccatataaagacaaatgcctctactagcctgctcaggttaggcaaacaatcactg 680
Query: 481 cagccaatcaag-ttgtttctgtgtattttctttcctctgtaaatgtaacctatgtagtg 539
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagccaatca-gattgtttctgtgtattttctttcctctgtaaatgtaacctatgtagtg 739
Query: 540 gttgtgagggacagctttgggacgtaacctcattgggcatactgccccagcctcagacct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gttgtgagggacagctttgggacgtaacctcattgggcatactgccccagcctcagacct 799
Query: 600 tttcccttcctgaataaacttcattaaattcaactcattttagaattttcttaaacaact 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tttcccttcctgaataaacttcattaaattcaactcattttagaattttcttaaacaact 859
Query: 660 taataatcacagttatgatgt 680
|||||||||||||||||||||
Sbjct: 860 taataatcacagttatgatgt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
