BAC Information

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BAC

Clone NameMSMg01-543G02
Chromosome9 (Build37)
Map Location 51,912,748 - 51,913,342
singlet/doubletsinglet
Overlap genenone
Upstream geneBtg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik
Downstream geneZc3h12c, LOC100042876, AI593442, Gm1715, Ddx10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543G02.T7 (MSMg01no543_g02.b1)MSMg01-543G02.TJ (MSMg01no543_g02.g1)
ACCAG608929AG608930
length748749
length of high quality
(start - end)
386 (162 - 547)597 (82 - 678)
definitionCHROMAT_FILE: MSMg01no543_g02.b1 PHD_FILE: MSMg01no543_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:44 2005CHROMAT_FILE: MSMg01no543_g02.g1 PHD_FILE: MSMg01no543_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCATTCTTCCTGTGCAAGCTAAACCGGTCTACCAAAATCT
GAAGAATGCTCTCTCCGGGCATCCGATAGCCACATAGCAAACCTGAGTCA
GGTCCTCTCCCACACCTATGCTCCTCACAACCCCCACACCTATGCTCCTC
ACAACCCCACACCTATGCTCCTCACAACCCCACACCTGTGCTCCTCACAA
CCCCACACCTGTGCTCCTCACAACCCCACACCTATGCTCCTCACAACCCC
ACACCTATGCTCCTCACAACCCCCACATCTGTGCTCCTCACAACCCCACA
CCTATGCTCCTCACAACCCCACACCTATGCTCCTCACAACCCCACACCTA
TGCTCCTCACAACCCCACACCTGTGCCCCTCACAACCCCACACCTGTGCT
CCTCACAACCCCACACCTGTGCTCCTCACAACCCCACACCTGTGCTCCTC
ACAATTCCACACCTGTGCTCCTCACAACCCCCACACCTGTGCTCCTCACA
ACCCCCACACCTGTGCTCCTCACAACCCCACACCTGTGCTCCTCACAACT
CCACACTTGTGCTCCTTACAACCCCACATCTGTGCTCCTTACAACCTCAC
ACCTGTGCTCCTCATATACCTCACACTCATGCTTCTCACAAATTAACATC
CGGGCTCCTTTACAACACTTTTGATCCCGATTCTTCGCCTGTGTCCTA
TTTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAAGGCAGACCCCCCC
TCCAAGTGGGGGAAACTAGACTTTCTGCAGACAGCCAGCTCCCCCAAAAG
AAAACATGAGAAACAGTGTTGTCCACAAACTCTGCAGTCAATGCCTGCAT
CTTCCCGGGAAGGAATGCAGAATGCATCTTGAGCCAGGGCCAGAATGCTC
ATCTTATGTATGGGTTCTCTGGGGAGGAGGGAGACCTCCCTAGCCATGTG
TTCCTTCAGGGAGCATGTGAGGATGTTGGCACCTGGAAGATGTTGTCTTC
TCTCTCTCTCCCATGGCAACACTGTGGGCTTTGGGGTTCTGAGCCATCAA
CTTCCAGTCCATTTGTCCAGTGATATGAGAAGAGTCATAAAAGCAGCGTG
GGCAGAGAGGGCCTGCTGTGTTATGCCTCTGCGTAGGGTGCTGGGCTTGG
TGAGCACTGAACATAACACTCTTAATCCTCCTGCCTCCGTGGCCTATCTG
TGCTGTCCAGTCACCTTCTGTTTAATAGTAAAAGCCGGTGACTTCTTTCC
CTTTTCCAAGACATATTACAAACAGAAATTAGGTGTAGAAATGGAGGTAT
ATGGTTCATTCCTTCATTTCAAACACCCTAGTCTACAGCAGAAGAGTAAG
GTCCCTGGCTGGAGCAACTGCTTCAAGGTTCAAGCCCCGATCCCCACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_g02.g1 MSMg01no543_g02.g1 CHROMAT_FILE:
MSMg01no543_g02.g1 PHD_FILE: MSMg01no543_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:44 2005
         (597 letters)



>mm_chr9_51912548_51913542
          Length = 995

 Score = 1062 bits (549), Expect = 0.0
 Identities = 585/599 (97%), Gaps = 6/599 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaaaggcaga--ccccccctccaagtgggggaaactagactttctgcagacagccagc 58
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 caaaaaggcagaccccccccctccaagtgggggaaactagactttctgcagacagccagc 736

                                                                       
Query: 59  tcccccaaaagaaaacatgagaaacagtgttgtccacaaactctgcagtcaatgcctgca 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 735 tcccccaaaagaaaacatgagaaacagtgttgtccacaaactctgcagtcaacgcctgca 676

                                                                       
Query: 119 tcttcccgggaaggaatgcagaatgcatcttgagccagggccagaatgctcatcttatgt 178
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 675 tcttcccgggaaggaatgcagaatgcatcttgagccagggccagagtgctcatcttatgt 616

                                                                       
Query: 179 atgggttctctggggaggagggagacctccctagccatgtgttccttcagggagcatgtg 238
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 615 acgggttctctggggaggagggaaacctccctagccatgtgttccttcagggagcatgtg 556

                                                                       
Query: 239 aggatgttggcacctggaagatgttgtcttctctctctctcccatggcaacactgtgggc 298
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 555 aggatgttggcacctggaagatgttgtct--tctctctctcccatggcaacactgtgggc 498

                                                                       
Query: 299 tttggggttctgagccatcaacttccagtccatttgtccagtgatatgagaagagtcata 358
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 497 tttggggttctgagccatcaacttccagtccatctgtccagtgatatgagaagagtcata 438

                                                                       
Query: 359 aaagcagcgtgggcagagagggcctgctgtgttatgcctctgcgtagggtgctgggcttg 418
           ||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 437 aaagcagcgtgggc--agagggcctgctgtgttatgcctctgtgtagggtgctgggcttg 380

                                                                       
Query: 419 gtgagcactgaacataacactcttaatcctcctgcctccgtggcctatctgtgctgtcca 478
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 gtgagcactgaacacaacactcttaatcctcctgcctcggtggcctatctgtgctgtcca 320

                                                                       
Query: 479 gtcaccttctgtttaatagtaaaagccggtgacttctttcccttttccaagacatattac 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtcaccttctgtttaatagtaaaagccggtgacttctttcccttttccaagacatattac 260

                                                                      
Query: 539 aaacagaaattaggtgtagaaatggaggtatatggttcattccttcatttcaaacaccc 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaacagaaattaggtgtagaaatggaggtatatggttcattccttcatttcaaacaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 995
Length adjustment: 10
Effective length of query: 587
Effective length of database: 985
Effective search space:   578195
Effective search space used:   578195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)