BAC Information

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BAC

Clone NameMSMg01-544C05
Chromosome9 (Build37)
Map Location 80,017,716 - 80,018,000
singlet/doubletsinglet
Overlap geneMyo6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249
Downstream geneImpg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544C05.T7 (MSMg01no544_c05.b1)MSMg01-544C05.TJ (MSMg01no544_c05.g1)
ACCAG609507AG609508
length1,007755
length of high quality
(start - end)
---285 (91 - 375)
definitionCHROMAT_FILE: MSMg01no544_c05.b1 PHD_FILE: MSMg01no544_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:42 2005CHROMAT_FILE: MSMg01no544_c05.g1 PHD_FILE: MSMg01no544_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATGATGAGGAAGGGTGTAGGTNAGAGAGAGAGGNAGAGGGAGTGAGGA
GAGAGCTCGAGATAAGAATTTAGCGGGCCGGCAGTAATACGGACTTCACG
TGATATTGTTCAGGAAGGAAAAGCGCGGGCGGGAAGATTTCATGTGGGAG
ATCCTTTTCCACAGCCGTAAAGGAACATTTGNAAGTTGGCCCTTTTATTT
CCTAAAAAATTGAAAGTTTACCATTGGNCTTTGGTTTGGTTGGTCCCCAG
GGGGAAATTATCCCAGAACTACCCAGGGTATTAATCAAGGGGTTTATTTA
AAAGGGCAATAATTCCAAACAAGGTTCCTCTCCNCTTTCCTTCTTCCCCC
AAAAAAAAATGTGCCCCCCCCCCAAAAAGAGCTTGTTCCTTTTTTCCGGG
TGGCCTCCCTTAAAATACTCCCAAATAACCTCCTTATTTTCCTTATAGTG
TTCTTATATTATGCTCTTAGTACTCCCATAAAGTCCTCATATTTTTGCCT
TAATTTTTCTCCTNNATGTCCTGTTTTTCTCTCGTCTTCCTTTTGTTGTC
TGTGTGATTTCCTTGTGANCCACTCATTTTGTTTCTCTGATCCGGCTGTC
TATGGTTTTTTTGATGATGTGTGTTTTCGTTAGCTTGTTTGTATTCATCA
TAATAATTCACTTTANAAGNATTGTTTTTTTGTTATATTGTTATAATTTA
TCTCTTCTTCATATTATATGGTTATTCTCCTCTGCAATCTCCNNNNCCTC
TTTCCCTGTCATGATTAATCTCACACTTATTTTTAATAGTAGATCATAAA
TGCCTNTATTTATCTTTATTTCCATCTTGTTTATTATCATCGATCACTTT
ANTAGGTACAATATGTANTAATGCTACATATAATCTCTATCCTTCTTCCN
TTTTATACTATATATTTCTTTTTATAATATCCTTACTCTACTTTATCTTT
CTCTCTCTTCATTTCATCACTCTATTCACTTTTTACTACTCATACTTCTT
GTTCTCN
NATAGAGAGGGGAAGACTATGGAGTXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTACCAGC
ATCCTTGTTGGGTGGCTTACGACCACCTGCAAATTCATCTCCAGGGGATT
TAGTGCCTTCTAACCATTGCAGATATCCCTACATGCCTAGCATGTACTAA
CACAGACACATACAAATAAATAAAAATATACATTTTTATTTTTAAATCAG
CTGATTAACCCTTACCAGGTGAGCTCTTTGATGTGGCAGAGTTTTTGTTA
TAATGGGCCTCTTTGGATCTGGGGATTAGCCGAGATTGTCAGGTATATAG
GAAGATGGTTTGAAATGGAACATGTAAAATCTACACTGAGGTTCAGAGGC
ATGGGGAATCAGGTGGTATAAGCCTTGTAATTCCAAGCACACCGGGAATC
TTGAAGAAAACCCAAAAAATTGGAACCCCCGGGTTATTGGCCACTTTAAT
TTGGGGAAAAAAAAAAAAAAAAAACCCCCTCTTTTAAAAAAAACCAATTT
TCTGCAACCCCCTATAATCCATTTTTTTTACCCCTCTTTAAAAAAATAAA
AATCTAAACTTTTCCCCCCAAATTATATATATAACTTTTTTCCTCCCTTC
TTCCCCTCTTAAATTATAGTTTGTTTTTTATTGACAACACTTGTCCTCCC
TATCTTTTCTCTCTGTGATAGTAAAAATATTCTCCACTTTTTATTAGGGT
TGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_c05.g1 MSMg01no544_c05.g1 CHROMAT_FILE:
MSMg01no544_c05.g1 PHD_FILE: MSMg01no544_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:42 2005
         (285 letters)



>mm_chr9_80017516_80018200
          Length = 685

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactaccagcatccttgttgggtggcttacgaccacctgcaaattcatctccaggggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactaccagcatccttgttgggtggcttacgaccacctgcaaattcatctccaggggatt 260

                                                                       
Query: 61  tagtgccttctaaccattgcagatatccctacatgcctagcatgtactaacacagacaca 120
           ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 261 tagtgtcttctaaccattgcagatatccatacatgcctagcatgtactcacacagacaca 320

                                                                       
Query: 121 tacaaataaataaaaatatacatttttatttttaaatcagctgattaacccttaccaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaaataaataaaaatatacatttttatttttaaatcagctgattaacccttaccaggt 380

                                                                       
Query: 181 gagctctttgatgtggcagagtttttgttataatgggcctctttggatctggggattagc 240
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gagctctttggtgtggcagagtttttgttataatggggctctttggatctggggattagc 440

                                                        
Query: 241 cgagattgtcaggtatataggaagatggtttgaaatggaacatgt 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgagattgtcaggtatataggaagatggtttgaaatggaacatgt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)