Query= MSMg01no544_c08.b1 MSMg01no544_c08.b1 CHROMAT_FILE:
MSMg01no544_c08.b1 PHD_FILE: MSMg01no544_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:43 2005
(570 letters)
>mm_chr9_23901336_23902306
Length = 971
Score = 1065 bits (551), Expect = 0.0
Identities = 566/571 (99%), Gaps = 1/571 (0%)
Strand = Plus / Minus
Query: 1 agttagcaatgcaacattttgatttactaaatgtaagcaaatagtacccatgattctact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 agttagcaatgcaacattttgatttactaaatgtaagcaaatagtacccatgattctact 712
Query: 61 gaaacctcacttggaggtaggagtctgtgtttgtctcttaatatgact-aggggtttcct 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 711 gaaacctcacttggaggtaggagtctgtgtttgtctcttaatatgactaaggggtttcct 652
Query: 120 atgagaactcatctcgccagtgtggtctcctctgctccttcccagaatgctcacaattaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atgagaactcatctcgccagtgtggtctcctctgctccttcccagaatgctcacaattaa 592
Query: 180 ctgtagaacagactgctgtgaattcagttttaaatattctctaggacctgaagttggaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctgtagaacagactgctgtgaattcagttttaaatattctctaggacctgaagttggaat 532
Query: 240 aaccaaagccacaagcctgattctttacagtcacagccaatctgtgagccatgtaggcca 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 531 aaccaaagccacaagcctgattctttacagtcacagtcaatctgtgagccatgtaggcca 472
Query: 300 acctttgctttactgcccccaataacagttatgggttctctatcacaaaagaacacgact 359
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||
Sbjct: 471 acctttgctttactgcccccaataactgttacgggttctctatcacaaaagaacacaact 412
Query: 360 taggaaaatatcctggggaagtcttagtgtgacttatccagcagcaggaagaagtcagtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 taggaaaatatcctggggaagtcttagtgtgacttatccagcagcaggaagaagtcagtg 352
Query: 420 ggctggacaagggaagacattaagtccacaagagaagggcttccacatgccagagctgag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggctggacaagggaagacattaagtccacaagagaagggcttccacatgccagagctgag 292
Query: 480 taagtgcattcctagagaaagggtcaaaattaaacaaagactcaacgacaaaccaaacac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 taagtgcattcctagagaaagggtcaaaattaaacaaagactcaacgacaaaccaaacac 232
Query: 540 ctctctgccgaggttcttctggcaaaggaac 570
|||||||||||||||||||||||||||||||
Sbjct: 231 ctctctgccgaggttcttctggcaaaggaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_c08.g1 MSMg01no544_c08.g1 CHROMAT_FILE:
MSMg01no544_c08.g1 PHD_FILE: MSMg01no544_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:43 2005
(590 letters)
>mm_chr9_23742044_23743033
Length = 990
Score = 1006 bits (520), Expect = 0.0
Identities = 562/590 (95%), Gaps = 22/590 (3%)
Strand = Plus / Plus
Query: 1 agtaaacattgccccagttaaagagacatgtgaatccttttctaggaaaacggaatttca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 agtaaacattgccccagttaaagagacatgtgaatccttttgtaggaaaacggaatttca 260
Query: 61 acaggtcagatatcagatgatatcaataacaaaagacaatcctttgcagcggaaaatagt 120
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||
Sbjct: 261 acaggtcagatatcagatgatagcaataacaaaagacaatcctttgcagcagaaaacagt 320
Query: 121 tacctagagaaggcaaaaacctctctcagatttgcactgttgttctttaatatactgagt 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tacctagagaaggcaaaaacctctctcagatttgcaccgttgttctttaatatactgagt 380
Query: 181 atagatgaaaatagactagaactgctctaggattttaagagaaacactaccatatatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagatgaaaatagactagaactgctctaggattttaagagaaacactaccatatatctt 440
Query: 241 gagtggaactctgtgctgagctgagcaaaactataacaaaatcatagtcactaagctatt 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactggaactctgtgctgagctgagcaaaactataacaaaatcatagtcactaagctatt 500
Query: 301 ttcagggccagttggatggctcagtgggtaaaggtacctgctgccaatcctgcttgatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcagggccagttggatggctcagtgggtaaaggtacctgctgccaatcctgcttgatct 560
Query: 361 ccagaatcataaaagcagagaagcagttctgagaacctgtcttctatcctccacatacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagaatcataaaagcagagaagcagttctgagaacctgtcttctatcctccacatacat 620
Query: 421 gcctgaatacaccaatgagccaacacacacacacacacacacacacacacacacacacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctgaatacaccaatgagccaacacacacacacacacacacacacacacacacacacac 680
Query: 481 acacacacacacacacacacacaagtacttctttgatcgtgcatcctttgaggtgctttt 540
| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 a----------------------agtacttctttgatcgtgcatcctttgaggtgctttt 718
Query: 541 atatacaatagaggctataacataatttttaaatactgttaataaataag 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atatacaatagaggctataacataatttttaaatactgttaataaataag 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
