Query= MSMg01no544_c14.b1 MSMg01no544_c14.b1 CHROMAT_FILE:
MSMg01no544_c14.b1 PHD_FILE: MSMg01no544_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:44 2005
(688 letters)
>mm_chr9_23921436_23922523
Length = 1088
Score = 1031 bits (533), Expect = 0.0
Identities = 563/591 (95%), Gaps = 28/591 (4%)
Strand = Plus / Minus
Query: 11 gaattcttaattttattgagaatataagatatccatatgcctaaacggacattacagtga 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaattcttaattttattgagaatataagatatccatatgcctaaacggacattacagtga 504
Query: 71 gacagtcagagacagattgcaaaggtgtgattcctgaagatgcttaattagacatgggca 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gacagtcagagacagattgcaaaggtgtgattcctgaagatgcttaattagacatgggca 444
Query: 131 gtttgcctttctactaagccctggagatgtctggacagttactgaagagttagcaatttc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtttgcctttctactaagccctggagatgtctggacagttactgaagagttagcaatttc 384
Query: 191 ttgctcagcactttgtcttatcttttctcatccagtatttctttccaaactctgccaagt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgctcagcactttgtcttatcttttctcatccagtatttctttccaaactctgccaagt 324
Query: 251 ggtcaatagcccactgactgacatggaaacccagaggtaggactgcccttattcagaggg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtcaatagcccactgactgacatggaaacccagaggtaggactgcccttattcagaggg 264
Query: 311 ctaccttcaatcttgcctaaagccatcttctgaatacggagttttgagaaatcttattta 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctaccttcaatcttgcctaaagccatcttctgaatacggagttttgagaaatcttattta 204
Query: 371 tttatttatttatttatttatttatttatttatttatttatttaaatatctaagatgact 430
|||||||||||||||| ||||||||||||||||
Sbjct: 203 tttatttatttattta----------------------------aatatctaagatgact 172
Query: 431 aacccccccagcaactcagctgtaatacctttgcaataacaattggagtattggcatccc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 aacccccccagcaactcagctgtaatacctttgcaataacaattggagtattggcatccc 112
Query: 491 aactgcttttctgtattcaccatctccagctgtcttacctagagctagctaagatttcta 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aactgcttttctgtattcaccatctccagctgtcttacctagagctagctaagatttcta 52
Query: 551 ccttgtattatctagctcattttcatatgcatacactgtgagaaaaaaacc 601
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 ccttgtattatctagctcattttcatatgcatacactgtgagaaaaaaacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_c14.g1 MSMg01no544_c14.g1 CHROMAT_FILE:
MSMg01no544_c14.g1 PHD_FILE: MSMg01no544_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:44 2005
(499 letters)
>mm_chr9_23756318_23757216
Length = 899
Score = 944 bits (488), Expect = 0.0
Identities = 497/500 (99%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 1 cagagccaaggggctggggagaaaaagtggctaaaaaa-caataaaaataattttttgag 59
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 200 cagagccaaggggctggggagaaaaagtggctaaaaaaacaataaaaataattttttgag 259
Query: 60 acaggatttctctgtatagccttggctgtcctggaactcactctgtagaccaggctggcc 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acagggtttctctgtatagccttggctgtcctggaactcactctgtagaccaggctggcc 319
Query: 120 tcgaactcagaaatctgcctgtctctgcctcccaaatgctgggattaaaggcatgcgcca 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 tcgaactcagaaatctgcctgtctctgcctcccaagtgctgggattaaaggcatgcgcca 379
Query: 180 ccactgcccggcttaaaaataaattttatttgaagatgatactcaacattgcatatatta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccactgcccggcttaaaaataaattttatttgaagatgatactcaacattgcatatatta 439
Query: 240 agtaaaaataaacgaaataattttaaacagcaaaaaggaaaaaataaattggatgccacc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtaaaaataaacgaaataattttaaacagcaaaaaggaaaaaataaattggatgccacc 499
Query: 300 tcataggtaaaataacaagttcctattatagaaaagcatgtggtttagaaactattgctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcataggtaaaataacaagttcctattatagaaaagcatgtggtttagaaactattgctg 559
Query: 360 tggccattgtagaaaagaaaataaatcaactcttaaaagatcatgcttaaagaaaagcaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggccattgtagaaaagaaaataaatcaactcttaaaagatcatgcttaaagaaaagcaa 619
Query: 420 gaatttctgaagtatgtttcacaattgtctccagctcttttaagaattttgtaatagggc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaatttctgaagtatgtttcacaattgtctccagctcttttaagaattttgtaatagggc 679
Query: 480 tgacaatgttctcaggttgg 499
||||||||||||||||||||
Sbjct: 680 tgacaatgttctcaggttgg 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
