MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-544C19
Chromosome	9 (Build37)
Map Location	45,485,790 - 45,486,193
singlet/doublet	singlet
Overlap gene	Dscaml1
Upstream gene	Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2
Downstream gene	Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
Link	Open Mouse BAC browser

Click to get alignment info.

name	Treh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58866 MGI:1926230
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phldb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102693 MGI:2143230
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arcn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213827 MGI:2387591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1500035H01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76568 MGI:1923818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71687 MGI:1918937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC021608 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192653 MGI:2384760
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mll1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214162 MGI:96995
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp5l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27425 MGI:1351597
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140630 MGI:2154580
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd3g (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12502 MGI:88333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd3d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12500 MGI:88331
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd3e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12501 MGI:88332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eva1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14012 MGI:1289160
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A530065I17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319742 MGI:2442647
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amica1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270152 MGI:2685484
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Scn2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72821 MGI:106921
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Scn4b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:399548 MGI:2687406
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmprss4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214523 MGI:2384877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il10ra (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16154 MGI:96538
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmprss13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214531 MGI:2682935
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fxyd6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59095 MGI:1890226
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fxyd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11936 MGI:1195260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Dscaml1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114873 MGI:2150309
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cep164 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214552 MGI:2384878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC640094 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:640094
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 51 ESTs, 24 Proteins pseudo : _no_value

name	Bace1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23821 MGI:1346542
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf214 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235315 MGI:2444451
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pcsk7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18554 MGI:107421
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tagln (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21345 MGI:106012
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sidt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214597 MGI:2446134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pafah1b2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18475 MGI:108415
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610005M20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70308 MGI:1917558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs

name	BC033915 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70661 MGI:2446296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apoa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11806 MGI:88049
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apoc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11814 MGI:88055
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apoa4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11808 MGI:88051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apoa5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66113 MGI:1913363
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp259 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22687 MGI:1330262
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bud13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215051 MGI:2443443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4931429L15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74361 MGI:1921611
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein

name	LOC100042722 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042722
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Treh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130466 GeneID:58866 MGI:1926230
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : trehalase (brush-border membrane glycoprotein) transcript_id : NM_021481.2

name	Phldb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38455421 GeneID:102693 MGI:2143230
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pleckstrin homology-like domain, family B, member 1 transcript_id : NM_153537.3

name	Arcn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54020741 GeneID:213827 MGI:2387591
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : archain 1 transcript_id : NM_145985.3

name	1500035H01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802295 GeneID:76568 MGI:1923818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1500035H01 gene transcript_id : NM_023831.3

name	Tmem25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373326 GeneID:71687 MGI:1918937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 25 transcript_id : NM_027865.2

name	BC021608 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20336733 GeneID:192653 MGI:2384760
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC021608 transcript_id : NM_138951.1

name	Mll1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486681 GeneID:214162 MGI:96995
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myeloid/lymphoid or mixed-lineage leukemia 1 transcript_id : NM_001081049.1

name	Atp5l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47058957 GeneID:27425 MGI:1351597
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g transcript_id : NM_013795.4

name	Ube4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34147054 GeneID:140630 MGI:2154580
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitination factor E4A, UFD2 homolog (S. cerevisiae) transcript_id : NM_145400.2

name	Cd3g (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753349 GeneID:12502 MGI:88333
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD3 antigen, gamma polypeptide transcript_id : NM_009850.1

name	Cd3d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61098089 GeneID:12500 MGI:88331
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD3 antigen, delta polypeptide transcript_id : NM_013487.2

name	Cd3e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803351 GeneID:12501 MGI:88332
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD3 antigen, epsilon polypeptide transcript_id : NM_007648.2

name	Eva1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802455 GeneID:14012 MGI:1289160
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : epithelial V-like antigen 1 transcript_id : NM_007962.3

name	A530065I17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369836 GeneID:319742 MGI:2442647
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A530065I17 gene transcript_id : NM_176993.3

name	Amica1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347555 GeneID:270152 MGI:2685484
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adhesion molecule, interacts with CXADR antigen 1 transcript_id : NM_001005421.3

name	Scn2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:130504904 GeneID:72821 MGI:106921
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sodium channel, voltage-gated, type II, beta transcript_id : NM_001014761.2

name	Scn4b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61889069 GeneID:399548 MGI:2687406
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sodium channel, type IV, beta transcript_id : NM_001013390.2

name	Tmprss4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130127 GeneID:214523 MGI:2384877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protease, serine 4 transcript_id : NM_145403.2

name	Il10ra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110624777 GeneID:16154 MGI:96538
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 10 receptor, alpha transcript_id : NM_008348.2

name	Tmprss13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111185929 GeneID:214531 MGI:2682935
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protease, serine 13 transcript_id : NM_001013373.2

name	Fxyd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110671330 GeneID:59095 MGI:1890226
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FXYD domain-containing ion transport regulator 6 transcript_id : NM_022004.6

name	Fxyd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:122937379 GeneID:11936 MGI:1195260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FXYD domain-containing ion transport regulator 2 transcript_id : NM_052823.2

name	Fxyd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:122937374 GeneID:11936 MGI:1195260
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FXYD domain-containing ion transport regulator 2 transcript_id : NM_007503.3

name	Dscaml1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486900 GeneID:114873 MGI:2150309
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Down syndrome cell adhesion molecule-like 1 transcript_id : NM_001081270.1

name	Cep164 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487016 GeneID:214552 MGI:2384878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centrosomal protein 164 transcript_id : NM_001081373.1

name	Bace1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366371 GeneID:23821 MGI:1346542
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : beta-site APP cleaving enzyme 1 transcript_id : NM_011792.4

name	Rnf214 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802103 GeneID:235315 MGI:2444451
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 214 transcript_id : NM_178709.3

name	Pcsk7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181189 GeneID:18554 MGI:107421
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proprotein convertase subtilisin/kexin type 7 transcript_id : NM_008794.2

name	Tagln (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362320 GeneID:21345 MGI:106012
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transgelin transcript_id : NM_011526.3

name	Sidt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802169 GeneID:214597 MGI:2446134
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SID1 transmembrane family, member 2 transcript_id : NM_172257.2

name	Pafah1b2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71067117 GeneID:18475 MGI:108415
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit transcript_id : NM_008775.3

name	2610005M20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259920 GeneID:70308 MGI:1917558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs product : RIKEN cDNA 2610005M20 gene transcript_id : XM_001478675.1

name	BC033915 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51890216 GeneID:70661 MGI:2446296
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC033915 transcript_id : NM_027498.2

name	Apoa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803330 GeneID:11806 MGI:88049
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apolipoprotein A-I transcript_id : NM_009692.2

name	Apoc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344172 GeneID:11814 MGI:88055
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apolipoprotein C-III transcript_id : NM_023114.3

name	Apoa4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347472 GeneID:11808 MGI:88051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apolipoprotein A-IV transcript_id : NM_007468.2

name	Apoa5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372938 GeneID:66113 MGI:1913363
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apolipoprotein A-V transcript_id : NM_080434.3

name	Zfp259 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778942 GeneID:22687 MGI:1330262
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 259 transcript_id : NM_011752.2

name	Bud13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130241 GeneID:215051 MGI:2443443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BUD13 homolog (yeast) transcript_id : NM_146000.2

name	4931429L15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259951 GeneID:74361 MGI:1921611
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein product : RIKEN cDNA 4931429L15 gene transcript_id : XM_001479853.1

name	LOC100042722 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259922 GeneID:100042722
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042722 transcript_id : XM_001478689.1

name	Treh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946884 CCDS:CCDS23117.1 GeneID:58866 MGI:1926230
definition	GO_component : GO:0005903 - brush border [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : trehalase protein_id : NP_067456.1

name	Phldb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38455422 CCDS:CCDS23118.1 GeneID:102693 MGI:2143230
definition	codon_start : 1 note : Ll5alpha product : pleckstrin homology-like domain, family B, member 1 protein_id : NP_705765.3

name	Arcn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54020742 GeneID:213827 MGI:2387591
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0030125 - clathrin vesicle coat [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0019028 - viral capsid [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : archain 1 protein_id : NP_666097.2

name	1500035H01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541828 CCDS:CCDS23119.1 GeneID:76568 MGI:1923818
definition	codon_start : 1 product : hypothetical protein LOC76568 protein_id : NP_076320.2

name	Tmem25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313687 CCDS:CCDS23120.1 GeneID:71687 MGI:1918937
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : transmembrane protein 25 protein_id : NP_082141.1

name	BC021608 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20336734 CCDS:CCDS23121.1 GeneID:192653 MGI:2384760
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC192653 protein_id : NP_620401.1

name	Mll1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486682 GeneID:214162 MGI:96995
definition	GO_component : GO:0044428 - nuclear part [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IGI] [Evidence IMP]; GO:0006306 - DNA methylation [Evidence IMP]; GO:0035162 - embryonic hemopoiesis [Evidence IMP]; GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : trithorax Drosophila product : myeloid/lymphoid or mixed-lineage leukemia 1 protein_id : NP_001074518.1

name	Atp5l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980744 GeneID:27425 MGI:1351597
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005753 - proton-transporting ATP synthase complex (sensu Eukaryota) [Evidence ISS]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence ISS]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0015986 - ATP synthesis coupled proton transport [Evidence ISS] [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : F1F0-ATP synthase g subunit product : ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G protein_id : NP_038823.2

name	Ube4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147055 CCDS:CCDS23122.1 GeneID:140630 MGI:2154580
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0000151 - ubiquitin ligase complex [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0016567 - protein ubiquitination [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IDA] codon_start : 1 exception : mismatches in translation product : ubiquitination factor E4A protein_id : NP_663375.2

name	Cd3g (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753350 CCDS:CCDS23123.1 GeneID:12502 MGI:88333
definition	GO_component : GO:0042105 - alpha-beta T cell receptor complex [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0030159 - receptor signaling complex scaffold activity [Evidence ISS]; GO:0042608 - T cell receptor binding [Evidence ISS]; GO:0004888 - transmembrane receptor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA] [Evidence ISS]; GO:0007163 - establishment and/or maintenance of cell polarity [Evidence ISS]; GO:0006461 - protein complex assembly [Evidence ISS]; GO:0015031 - protein transport [Evidence ISS]; GO:0042981 - regulation of apoptosis [Evidence ISS]; GO:0042110 - T cell activation [Evidence ISS] codon_start : 1 product : CD3 antigen, gamma polypeptide protein_id : NP_033980.1

name	Cd3d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61098090 CCDS:CCDS23124.1 GeneID:12500 MGI:88331
definition	GO_component : GO:0042105 - alpha-beta T cell receptor complex [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0042101 - T cell receptor complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0006461 - protein complex assembly [Evidence NAS]; GO:0042110 - T cell activation [Evidence NAS] codon_start : 1 exception : mismatches in translation product : CD3 antigen, delta polypeptide protein_id : NP_038515.2

name	Cd3e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680886 CCDS:CCDS23125.1 GeneID:12501 MGI:88332
definition	GO_component : GO:0042105 - alpha-beta T cell receptor complex [Evidence IDA]; GO:0009897 - external side of plasma membrane [Evidence IDA] [Evidence ISS]; GO:0001772 - immunological synapse [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS]; GO:0042101 - T cell receptor complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IDA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IDA]; GO:0046649 - lymphocyte activation [Evidence IMP]; GO:0045060 - negative thymic T cell selection [Evidence IDA]; GO:0050850 - positive regulation of calcium-mediated signaling [Evidence IDA]; GO:0050731 - positive regulation of peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0042102 - positive regulation of T cell proliferation [Evidence IDA]; GO:0050852 - T cell receptor signaling pathway [Evidence IDA] codon_start : 1 product : CD3 antigen, epsilon polypeptide protein_id : NP_031674.1

name	Eva1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542623 CCDS:CCDS23126.1 GeneID:14012 MGI:1289160
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 note : epithelial V-like antigen product : epithelial V-like antigen 1 protein_id : NP_031988.2

name	A530065I17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892839 GeneID:319742 MGI:2442647
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; myelin protein zero-like protein 3; Ig-like domain-containing protein UNQ2966 product : myelin protein zero-like protein 3 isoform 1 protein_id : NP_795967.1

name	Amica1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61657932 CCDS:CCDS23128.1 GeneID:270152 MGI:2685484
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 exception : mismatches in translation note : dendritic-cell specific protein Crea7 product : adhesion molecule AMICA protein_id : NP_001005421.2

name	Scn2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906204 GeneID:72821 MGI:106921
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO:0005248 - voltage-gated sodium channel activity [Evidence ISS] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : sodium channel, voltage-gated, type II, beta polypeptide product : sodium channel, voltage-gated, type II, beta protein_id : NP_001014761.1

name	Scn4b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61656194 CCDS:CCDS23130.1 GeneID:399548 MGI:2687406
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : sodium channel, type IV, beta polypeptide; voltage gated sodium channel beta 4 subunit; sodium channel accessory subunit product : sodium channel, type IV, beta protein_id : NP_001013408.1

name	Tmprss4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703806 GeneID:214523 MGI:2384877
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] codon_start : 1 note : membrane-type serine protease 2 product : transmembrane protease, serine 4 protein_id : NP_663378.1

name	Il10ra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680389 CCDS:CCDS23131.1 GeneID:16154 MGI:96538
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004907 - interleukin receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA] codon_start : 1 product : interleukin 10 receptor, alpha protein_id : NP_032374.1

name	Tmprss13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111185930 CCDS:CCDS23132.1 GeneID:214531 MGI:2682935
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : mosaic serine protease-like product : transmembrane protease, serine 13 protein_id : NP_001013391.2

name	Fxyd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11612657 CCDS:CCDS23133.1 GeneID:59095 MGI:1890226
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : FXYD domain-containing ion transport regulator 6 protein_id : NP_071287.1

name	Fxyd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16554572 CCDS:CCDS23134.1 GeneID:11936 MGI:1195260
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant b; sodium pump gamma chain; sodium/potassium-transporting ATPase gamma chain; ATPase, Na+/K+ transporting, gamma 1 polypeptide product : FXYD domain-containing ion transport regulator 2 isoform b protein_id : NP_439888.1

name	Fxyd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16554570 GeneID:11936 MGI:1195260
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant a; sodium pump gamma chain; sodium/potassium-transporting ATPase gamma chain; ATPase, Na+/K+ transporting, gamma 1 polypeptide product : FXYD domain-containing ion transport regulator 2 isoform a protein_id : NP_031529.2

name	Dscaml1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486901 GeneID:114873 MGI:2150309
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence ISS]; GO:0016337 - cell-cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Down syndrome cell adhesion molecule-like protein product : Down syndrome cell adhesion molecule-like 1 protein_id : NP_001074739.1

name	Cep164 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487017 GeneID:214552 MGI:2384878
definition	codon_start : 1 product : centrosomal protein 164 protein_id : NP_001074842.1

name	Bace1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981412 CCDS:CCDS23135.1 GeneID:23821 MGI:1346542
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0031410 - cytoplasmic vesicle [Evidence IDA]; GO:0005768 - endosome [Evidence ISS]; GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO:0009049 - aspartic-type signal peptidase activity [Evidence IEA]; GO:0004175 - endopeptidase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004194 - pepsin A activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0050435 - beta-amyloid metabolism [Evidence ISS]; GO:0006509 - membrane protein ectodomain proteolysis [Evidence ISS]; GO:0006508 - proteolysis [Evidence IDA] codon_start : 1 exception : mismatches in translation note : APP beta-secretase product : beta-site APP cleaving enzyme 1 protein_id : NP_035922.3

name	Rnf214 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520119 CCDS:CCDS23136.1 GeneID:235315 MGI:2444451
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ring finger protein 214 protein_id : NP_848824.1

name	Pcsk7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112181190 GeneID:18554 MGI:107421
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0004289 - subtilase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : proprotein convertase subtilisin/kexin type 7 protein_id : NP_032820.2

name	Tagln (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755714 CCDS:CCDS23137.1 GeneID:21345 MGI:106012
definition	GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IMP]; GO:0007517 - muscle development [Evidence IEA] codon_start : 1 note : SM-22 alpha product : transgelin protein_id : NP_035656.1

name	Sidt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26986551 CCDS:CCDS23138.1 GeneID:214597 MGI:2446134
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : SID1 transmembrane family, member 2 protein_id : NP_758461.1

name	Pafah1b2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254624 CCDS:CCDS23139.1 GeneID:18475 MGI:108415
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0003847 - 1-alkyl-2-acetylglycerophosphocholine esterase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP] [Evidence IGI] codon_start : 1 product : platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit protein_id : NP_032801.2

name	2610005M20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259921 GeneID:70308 MGI:1917558
definition	codon_start : 1 product : hypothetical protein LOC70308 protein_id : XP_001478725.1

name	BC033915 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51890217 CCDS:CCDS23140.1 GeneID:70661 MGI:2446296
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC70661 protein_id : NP_081774.2

name	Apoa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753096 GeneID:11806 MGI:88049
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA]; GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0005319 - lipid transporter activity [Evidence IMP]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0008203 - cholesterol metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0006869 - lipid transport [Evidence IEA]; GO:0042157 - lipoprotein metabolism [Evidence IEA]; GO:0030300 - regulation of cholesterol absorption [Evidence IDA]; GO:0008202 - steroid metabolism [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation function : acts as a cofactor for the lecithin cholesterol acyltransferase product : apolipoprotein A-I protein_id : NP_033822.1

name	Apoc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15421856 CCDS:CCDS23141.1 GeneID:11814 MGI:88055
definition	GO_component : GO:0042627 - chylomicron [Evidence IEA]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0005319 - lipid transporter activity [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA]; GO:0006869 - lipid transport [Evidence IEA]; GO:0042157 - lipoprotein metabolism [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : apolipoprotein C-III protein_id : NP_075603.1

name	Apoa4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347473 CCDS:CCDS23142.1 GeneID:11808 MGI:88051
definition	GO_component : GO:0042627 - chylomicron [Evidence IEA]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0005319 - lipid transporter activity [Evidence IEA] GO_process : GO:0006869 - lipid transport [Evidence IEA]; GO:0042157 - lipoprotein metabolism [Evidence IEA]; GO:0030300 - regulation of cholesterol absorption [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : apolipoprotein A-IV protein_id : NP_031494.2

name	Apoa5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560003 CCDS:CCDS23143.1 GeneID:66113 MGI:1913363
definition	GO_component : GO:0042627 - chylomicron [Evidence IEA]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005319 - lipid transporter activity [Evidence IEA]; GO:0017129 - triglyceride binding [Evidence IDA] GO_process : GO:0042157 - lipoprotein metabolism [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : apolipoprotein A-V protein_id : NP_536682.2

name	Zfp259 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6756053 CCDS:CCDS23144.1 GeneID:22687 MGI:1330262
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IDA] codon_start : 1 product : zinc finger protein 259 protein_id : NP_035882.1

name	Bud13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122459 CCDS:CCDS23145.1 GeneID:215051 MGI:2443443
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA] codon_start : 1 product : BUD13 homolog protein_id : NP_666112.1

name	4931429L15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259952 GeneID:74361 MGI:1921611
definition	codon_start : 1 product : hypothetical protein LOC74361 protein_id : XP_001479903.1

name	LOC100042722 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259923 GeneID:100042722
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478739.1

name	LOC640094 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259950 GeneID:640094
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 51 ESTs, 24 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_034358.1

clone name	MSMg01-416H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-320D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042A13
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-544C19.T7 (MSMg01no544_c19.b1)	MSMg01-544C19.TJ (MSMg01no544_c19.g1)
ACC	AG609535	AG609536
length	754	741
length of high quality (start - end)	404 (74 - 477)	592 (78 - 669)
definition	CHROMAT_FILE: MSMg01no544_c19.b1 PHD_FILE: MSMg01no544_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:45 2005	CHROMAT_FILE: MSMg01no544_c19.g1 PHD_FILE: MSMg01no544_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:45 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TGCAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATG CGCGGAATTCCTCAAAGTTCCCTTTGCCTCTCTGCCTCCTGCCTGGCTGA GCTTCCCTGGCAGGAACTCTTGAGCAGTGTTCCATATAACCACCCGTAGC TGCCTTTCATGGGTCAGGGATGTCCTTTTACTAGAGAAGGCATTTATGCA CACATAACCGTTCACATGCATGTGTATGAATCTGCCCCATCATGGGCGGG CTACTGTGCCCCTTTGACACTTGATTGTGGGTGTAGTTTGTACACATGTG TGCACCTCACACATCACTGCACACGTGTGTGTATATGCATGTCGGGTATA TTCTGATCTTGGCTCACTGATTGAAAATTTCATTAGCAGACAAGCAGTCC CCAGAAGGAACCGACTCAGCAGTTGTTTTTCCAGCTCACGAAGCAGCATT GGTTTGGCCACATCTGGTCCACCAGTCTTGGCACCCACAGATAAGTGGGG GTTGGGGAGGGAACTTGATACACTGTTGCGAGCTTTCGGTTCCTGTCTTG CTCCATCTGAGCCTTTTCTGCACTCTGTTCCAGTCTGCCCCTCTGACTTG ATGCACCTTTCCATTGTCCAGTAGCCATAGGGTCCAGTAGCCCACACTCC TGTACTCACCCCCTTCCCCCCCTTGAAGCCTGAGCCCCCTTGCCATGGTC AGGGTGTGCTTTCCTTCTCCCTCTTCCTTGGGGGAGTTCTTGGTAAAACA CAAG	TTTACGATGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATGTGTTTTAAAGACAAG TCTCTTACTGGGTGTTTACTTTATGGAACGTTCGCCTTGTTCTGTGACAT GTCCTTTTGGTTTCTTGATGGCATCTTTTGAAGCAGAAGACAGCTTCATT TTGATGAAATACAGGTTGTCTGTTTTTCTGTCTGTTGCTGGTACTTATCC AGGGAGCCACCACCTAATCTGAGGTCTTGCAGATTTACCTCTTTGTGCTC TAAGATTCTGTAGTTTTAGATGGGCTATGTGGGTCTTTGATCCATTCTGA GTCAGTTTTTCGGTGTGAGGTTGGGGTCTGCCTCCATCCTTATGACTGTA AGCATCCACTTGACATGCCCTTTCTCGTTTGAAGGCCTTGGCATCCTTGC TAAGATTGTGAGGGTTTATTTCTGGACCCTCACTTCTGTTCTATTATTCT AATTTTGACATCGTTGTCATTGTTGCTTTGAGACAGGGCCTCAGTCTATA GCCCTGGCTGGTCTGGAACTCACTATGTAGACCAGACTGGTCTCAAACTC ATAGAGATCCACCTGCCTCTACCTCTTAAGTGCTGTGATAAAAGACATGC CACTGTGCCTGGCTGTTGTCTGGTTACTCTAAGTATTGATATGTCAGTAC TTTGATTGCTATAGCGTTGAAGTCAGTTTTAAAATCAGAAN
quality values	Open. Hide. 7 8 8 8 7 7 8 8 10 8 9 9 9 19 14 22 22 22 18 19 27 37 27 26 25 30 27 31 36 41 30 30 31 30 27 21 23 9 9 9 13 10 10 10 8 8 8 8 8 8 10 12 23 22 19 19 15 19 27 23 30 30 30 21 15 9 15 12 11 11 15 17 19 28 28 23 23 23 34 34 48 43 43 48 48 57 59 59 59 59 59 59 59 59 50 50 50 50 53 48 48 48 44 43 48 47 46 43 37 33 33 32 30 29 44 39 37 33 33 33 33 33 37 48 47 47 47 47 47 47 47 50 50 50 50 50 57 50 50 50 48 48 48 50 57 57 57 57 59 59 57 50 50 50 50 47 53 41 41 37 37 42 41 37 32 27 25 22 22 24 28 29 33 41 50 50 50 50 50 59 59 39 35 32 32 37 37 39 43 43 50 53 53 53 53 53 53 68 68 68 68 68 68 68 68 68 54 50 48 48 48 57 50 68 68 57 57 57 57 57 59 59 68 57 57 57 57 57 57 57 57 57 57 68 68 57 57 57 57 57 57 68 68 68 68 68 68 59 59 59 59 59 59 68 68 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 57 57 57 57 57 57 68 44 44 21 24 18 18 16 28 22 44 44 59 59 59 57 59 59 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 59 59 59 59 59 68 68 57 57 57 57 57 57 57 52 52 57 52 54 54 57 57 57 57 57 52 52 43 43 32 32 28 32 27 32 18 18 14 16 16 22 22 20 20 32 32 24 14 19 18 32 32 37 42 42 46 37 37 43 59 34 42 33 33 42 44 41 41 20 24 24 44 44 44 59 47 43 43 43 48 48 54 54 54 54 48 48 37 37 30 28 30 42 42 41 37 43 43 43 42 31 31 25 25 28 37 39 48 40 43 30 25 25 28 28 28 31 28 25 25 22 22 22 24 20 20 30 30 19 20 22 22 19 15 15 14 15 14 13 13 12 18 15 32 32 40 34 34 25 25 25 28 28 28 22 14 14 10 15 20 24 33 33 37 29 21 16 16 19 30 33 37 37 28 28 28 33 22 15 9 9 9 11 11 37 37 39 37 28 22 22 22 29 33 36 36 26 25 15 15 15 25 22 32 22 15 13 15 24 34 39 39 37 30 26 18 18 16 23 23 30 29 27 32 30 20 22 30 30 30 30 41 31 17 16 16 20 20 11 18 15 15 15 25 30 39 34 20 16 13 11 10 10 14 25 13 12 16 10 9 9 9 9 9 10 10 10 9 9 10 12 20 21 17 15 13 17 10 10 10 8 8 7 9 9 9 12 12 12 12 10 10 10 11 19 10 11 11 11 15 13 13 12 12 23 30 37 26 28 14 13 10 10 8 9 10 10 8 15 8 8 8 8 8 8 8 8 8 8 12 11 16 14 9 10 19 10 8 8 11 11 9 8 8 8 8 8 7 9 9 9 12 12 12 8 8 8 8 8 8 10 10 13 10 10 8 8 8 8 9 10 12 19 24 19 18 23 10 8 8 8 8 8 8 12 6 6 6 6 6 6 12 11 11 10 10 16 12 12	Open. Hide. 7 7 6 6 6 6 6 10 12 13 9 8 8 8 8 8 8 12 10 11 11 23 19 14 19 22 23 25 33 41 41 25 23 15 9 9 9 9 8 6 6 6 10 10 9 10 8 8 8 15 19 30 30 33 33 41 50 47 47 44 27 27 11 7 7 7 7 7 9 12 16 12 12 16 16 28 24 37 39 43 43 57 57 57 57 57 57 59 57 57 57 57 57 57 50 50 50 50 50 50 59 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 59 59 59 68 68 59 59 57 57 57 57 68 68 57 57 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 47 52 52 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 43 43 38 43 39 35 35 43 35 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 68 68 68 68 57 57 57 68 68 59 59 59 59 59 59 57 57 57 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 57 57 68 68 57 57 59 59 59 59 59 68 68 59 59 59 57 57 57 57 48 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 57 59 59 59 57 59 59 59 59 68 59 57 57 57 68 57 57 57 57 57 57 57 68 68 68 68 59 59 57 57 48 48 48 48 48 48 57 44 44 48 48 48 57 48 48 48 59 59 59 59 59 59 39 39 35 37 35 36 36 37 37 37 40 37 36 36 39 59 47 47 47 37 39 37 37 43 43 37 37 41 43 41 41 41 41 47 48 59 59 48 47 43 43 43 43 43 43 48 34 34 21 21 12 24 22 28 28 23 31 32 31 31 41 37 39 30 25 25 39 34 37 28 22 19 14 14 21 28 28 33 28 25 30 30 37 37 41 36 36 41 41 41 41 34 31 35 31 31 28 32 25 33 33 30 32 31 25 25 24 28 28 30 30 34 30 30 18 19 20 34 28 28 25 31 30 37 24 25 22 20 20 22 22 24 28 28 23 20 20 22 22 30 21 17 10 10 10 18 22 30 28 23 17 15 19 15 15 18 24 27 28 30 30 30 26 16 10 9 9 17 25 12 10 10 18 12 14 11 11 13 22 28 15 13 9 9 14 21 27 22 18 18 18 16 19 9 10 10 10 9 9 10 10 14 21 32 32 24 17 10 10 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no544_c19.b1 MSMg01no544_c19.b1 CHROMAT_FILE:
MSMg01no544_c19.b1 PHD_FILE: MSMg01no544_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:45 2005
         (404 letters)



>mm_chr9_45485590_45486393
          Length = 804

 Score =  735 bits (380), Expect = 0.0
 Identities = 398/404 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcctctctgcctcctgcctggctgagcttccctggcaggaactcttgagcagtgttcc 60
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 604 ttgcccctctgcctcctgcctggctgggcttccctggcaggaactcttgagcagtgttcc 545

                                                                       
Query: 61  atataaccacccgtagctgcctttcatgggtcagggatgtccttttactagagaaggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atataaccacccgtagctgcctttcatgggtcagggatgtccttttactagagaaggcat 485

                                                                       
Query: 121 ttatgcacacataaccgttcacatgcatgtgtatgaatctgccccatcatgggcgggcta 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 484 ttatgaacacataaccgttcacatgcatgtgtatgaatctgccccatcacgggcgggcta 425

                                                                       
Query: 181 ctgtgcccctttgacacttgattgtgggtgtagtttgtacacatgtgtgcacctcacaca 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctgtgcccctttgacacttgatcgtgggtgtagtttgtacacatgtgtgcacctcacaca 365

                                                                       
Query: 241 tcactgcacacgtgtgtgtatatgcatgtcgggtatattctgatcttggctcactgattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcactgcacacgtgtgtgtatatgcatgtcgggtatattctgatcttggctcactgattg 305

                                                                       
Query: 301 aaaatttcattagcagacaagcagtccccagaaggaaccgactcagcagttgtttttcca 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 304 aaaatttcattagcagacaagcagtcctcagaaggaaccgactcagcagttgtttttcca 245

                                                       
Query: 361 gctcacgaagcagcattggtttggccacatctggtccaccagtc 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gctcacgaagcagcattggtttggccacatctggtccaccagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information