BAC Information

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BAC

Clone NameMSMg01-544D06
Chromosome9 (Build37)
Map Location 19,181,720 - 19,182,378
singlet/doubletsinglet
Overlap genenone
Upstream geneNaalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847
Downstream geneGA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544D06.T7 (MSMg01no544_d06.b1)MSMg01-544D06.TJ (MSMg01no544_d06.g1)
ACCAG609557AG609558
length756578
length of high quality
(start - end)		661 (49 - 709)72 (63 - 134)
definitionCHROMAT_FILE: MSMg01no544_d06.b1 PHD_FILE: MSMg01no544_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:47 2005CHROMAT_FILE: MSMg01no544_d06.g1 PHD_FILE: MSMg01no544_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATATGATCTCATCTGTATCATACTGAGTCTCTGAGTCTTATA
TTACAATAATTAGTAAATAAAAGATTGCACCCTTGTGTACTTCACAGTAG
ATCTACAGAGATGTAAGAAGTAAAATTGTAATTGGCTTATATATGTCACA
TAGAAAATTTCTCTGCTGGAGTTTTATATTATAAGCACTAGCATATTGTG
CTTATTTTTGTGTATGTCTTAGTGTTCTTTTGTATAAACATGATGAAAGT
GAAAAATAAGATATCTTAACTAGACCTACACTTTCTACATTTAAGTGGAA
ATCCAATATTTTATGACTATTTCTTAGAAATATCATATAATTTTATCCAC
AAATTTTCTTTTTGCATATGTTGTGGAGTACTTCTGTTTGTAAAGGTAAA
TTTTAATTTCATTTCAATATAAGTACTTATCAAAACATATAAATAAATTT
ACATTCAAATATATATTTCACTGGACAACAGAATGTTATCAAGATAAAAA
AGGAGGAGACATTCACTGCTGGTGAGTATAATCTAGACACTCAGCATGGA
AATTAGTTATGCATGTTTTTAACCAAAACTGATAGAAAAAAAACTTCACA
AAATGTAGAACTGCTGTATATAACTAACCCATTTACAAAAGCCTGGAAAT
ATAACCAAGGGTATCTATATTCATGTGCATTGCCTATCTTATACAGTATA
AAAGAA

TGTTTACATGTATGGTAGCCTGGGGCCGCCTGGCTCACTTTAGTGACCTA
TAAAGTCTCGGATTCTTGGGCCCTCTGGGTTCTGCAACTTTGGATACCTG
GGTTTGAAACACTAGCTGCCCCCCTGTGTCCCTGACCAGAAAGTGGGAAT
CAGAGGACTCGACATTAAAGCTTTAAATATAAGAGCCCGTGATGCCCAGC
CTGCATGACGACTATCAGCCCTCTCCTCATGTGAGAAGGTGGGGTGCCAG
AGAGTCTTACCAGCTCTAGGGCTTGAAAAGCCATGGGATTTTGCCAAAAA
CTGGACCCGGGGCCCGGGATGCCCCAGGTTAAAGGGGGCCGAAACCCCCC
CTCCCCTTTTTTAAAAAAGGGGGGGAAAATTTTTTTTCTGGGGGAAAAAA
AAAAAGGGGGGGGGCCCCCCCCCTCTCTTTTAAGAATTTTTCCCCCCCCC
CCCCCCCTTTTTTTGGGGTAAAAAATCCGTCCGGGAAATTTTTCCCCCCC
CATGAATTGGGGGGGGGGTGAATTATATAATATTGGGGTTGCTTTCCCCC
CCCCTTTTTTTTTTCCCCCCGCGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_d06.b1 MSMg01no544_d06.b1 CHROMAT_FILE:
MSMg01no544_d06.b1 PHD_FILE: MSMg01no544_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:47 2005
         (661 letters)



>mm_chr9_19181516_19182578
          Length = 1063

 Score = 1239 bits (641), Expect = 0.0
 Identities = 654/659 (99%), Gaps = 2/659 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatgatctcatctgtatcatactgagtctctgagtcttatattacaataatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gaattcatatgatctcatctgtatcatactgagtctctgagtcttatattacaataatta 804

                                                                       
Query: 65  gtaaataaaagattgcacccttgtgtacttcacagtagatctacagagatgtaagaagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtaaataaaagattgcacccttgtgtacttcacagtagatctacagagatgtaagaagta 744

                                                                       
Query: 125 aaattgtaattggcttatatatgtcacatagaaaatttctctgctggagttttatattat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaattgtaattggcttatatatgtcacatagaaaatttctctgctggagttttatattat 684

                                                                       
Query: 185 aagcactagcatattgtgcttatttttgtgtatgtcttagtgttcttttgtataaacatg 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 683 aagcactagcatattgtgcttatttttgtgtatgtctaagtgttcttttgtataaacatg 624

                                                                       
Query: 245 atgaaagtgaaaaataagatatcttaactagacctacactttctacatttaagtggaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atgaaagtgaaaaataagatatcttaactagacctacactttctacatttaagtggaaat 564

                                                                       
Query: 305 ccaatattttatgactatttcttagaaatatcatataattttatccacaaattttctttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccaatattttatgactatttcttagaaatatcatataattttatccacaaattttctttt 504

                                                                       
Query: 365 tgcatatgttgtggagtacttctgtttgtaaaggtaaattttaatttcatttcaatataa 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 503 tgcatatgttgtggagtacttctgtttgtaaaggtaaattttcatttcatttcaatataa 444

                                                                       
Query: 425 gtacttatcaaaacatataaataaatttacattcaaatatatatttcactggacaacaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtacttatcaaaacatataaataaatttacattcaaatatatatttcactggacaacaga 384

                                                                       
Query: 485 atgttatcaagataaaaaaggaggagacattcactgctggtgagtataatctagacactc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgttatcaagataaaaaaggaggagacattcactgctggtgagtataatctagacactc 324

                                                                       
Query: 545 agcatggaaattagttatgcatgtttttaaccaaaactgatag--aaaaaaaacttcaca 602
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 323 agcatggaaattagttatgcatgtttttaaccaaaactgatagaaaaaaaaaacttcaca 264

                                                                      
Query: 603 aaatgtagaactgctgtatataactaacccatttacaaaagcctggaaatataaccaag 661
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaatgtagaactgctgtataaaactaacccatttacaaaagcctggaaatataaccaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1063
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1053
Effective search space:   685503
Effective search space used:   685503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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