BAC Information

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BAC

Clone NameMSMg01-544G01
Chromosome9 (Build37)
Map Location 38,668,489 - 38,668,946
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26
Downstream geneOlfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544G01.T7 (MSMg01no544_g01.b1)MSMg01-544G01.TJ (MSMg01no544_g01.g1)
ACCAG609691AG609692
length747748
length of high quality
(start - end)		512 (81 - 592)576 (82 - 657)
definitionCHROMAT_FILE: MSMg01no544_g01.b1 PHD_FILE: MSMg01no544_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:01 2005CHROMAT_FILE: MSMg01no544_g01.g1 PHD_FILE: MSMg01no544_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGC
GCGGAATTCTTTGAGATTCCTCTTACAAAGAGGAAAATTGTTTTGTTCTT
CATCATATCCTCTCACTTTCAGTTTTATGTCCTTTGCTATGACGATTAAT
ACTCCCAATTACATATTATATGAATCAGTTTGTTAAGAATTCATTATATT
TTCAATGAAAATATTTGATCTACTTAATTTTCATAGCCTATGTGTCTCTA
TTAAGGAAGTATATCTTACCAGCCATTTCAGATCTCCATTTCTGTAGCCT
GATGGAACATTATGTTTTAATATAAAAAATAATATCTGCATTATCTCTTA
GATAATATTTAGGGATTTACTATTTTTATTTGATTTGTATATTTATTCAA
TACACTTCATGTGTTATTTATATTCTGAATTGTGTTGAAAATTTCTAGAC
AGTATTTACTATGTTGCTTTCCTATATTAATTTAACTAGCTAGTATCAGT
CAATTACTGATACTAGTCAGTTTCTCCCTATTCCTTTCATAGACAATGCT
TCTAGATCTTCCTCTAAAGCCCCTGCAATGTCCTACATTAGTTTGTTTCC
AAGGATCCCATGGAAAGCTAAACATGAGACAAGCGATTTGAGGTTTGCAT
ATTTCTGTAATGATCCTTACTTTTATTGTACATACATAATACTTAAAATA
AGTCTGGCTNTGATTCTATAAATTCCTTGCTTATAGCCACATACATT

TGGAAGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTGCGGAGAAATCTCAA
ATGGCCAAGAAGCACTTACAGAAGTGTTCAAAGTCCTTAGTCATCATGAA
AGTGAAAATTAAAACAACCCTCACATTCCACCTTACACCAATAACAATGG
ATAAGATCAAACGTGTAGGTGACACCACATACTGGCTAGGATATGGAGAA
ACAGCCACAATCCTCCATTGCTGGTGGGAGTACAAACTGGTATAACCATT
CTTGTAATAAATGTGGTGGCTCCTCAAAAAATTGGAAATAGTTCTACCAG
AAGACCCAGCTATTCCATTCTTGGGCATAAACCCAAAAGATGCCTCACCA
TAGACAAATGTTCCACAATGTTCACGGCATCCTTATTTGTTATAACCAGA
AGCTAAAAACAACCCATATGTTTTTTCAAATGAAGACTGGATACAGGAAA
TGGGGCTTACTTACACAATGAAATACTATTCAGCCATTAAGAACGAGAAC
ATCATGAATTTTGCAGGCAAATGGATGGAACTATAAAGTATATCATCCTG
AGTGAGGTACTCCAGACCCAAAGGGACATACATGGTACGTACTAACAAGT
GAATGATTAGCCAAAAAGTACAAAATACCTAGGATACAAACCATGGAATT
TAAGAAGTTTAATAATCAGAAGCCCCAATTGAGGATGTTTCAGTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_g01.b1 MSMg01no544_g01.b1 CHROMAT_FILE:
MSMg01no544_g01.b1 PHD_FILE: MSMg01no544_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:01 2005
         (512 letters)



>mm_chr9_38668034_38668946
          Length = 913

 Score =  787 bits (407), Expect = 0.0
 Identities = 446/459 (97%), Gaps = 2/459 (0%)
 Strand = Plus / Minus

                                                                       
Query: 55  tgctatgacgattaatactcccaattacatattatatgaatcagtttgttaagaattcat 114
           |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 913 tgctatgatggttaatactcccaattacatattatatgaatcagtttattaagaattcat 854

                                                                       
Query: 115 tatattttcaatgaaaatatttgatctacttaattttcatagcctatgtgtctctattaa 174
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 853 tatattttcaatgaaaatatttgatctacttaattttcatagtctatgtgtctctattaa 794

                                                                       
Query: 175 ggaagtatatcttaccagccatttcagatctccatttctgtagcctgatggaacattatg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ggaagtatatcttaccagccatttcagatctccatttctgtagcctgatggaacattatg 734

                                                                       
Query: 235 ttttaatataaaaaataatatctgcattatctcttagataatatttagggatttactatt 294
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 733 ttttaatat-aaaaataatatctgcattaactcttagataatatttagggatttactatt 675

                                                                       
Query: 295 tttatttgatttgtatatt-tattcaatacacttcatgtgttatttatattctgaattgt 353
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 674 tttatttgatttgtatattgtattcaatacacttcatgtgttatttatactctgaattgt 615

                                                                       
Query: 354 gttgaaaatttctagacagtatttactatgttgctttcctatattaatttaactagctag 413
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 614 gttgaaaatttctagacagtatttactatgttgctttcctatattaattaaaatagctag 555

                                                                       
Query: 414 tatcagtcaattactgatactagtcagtttctccctattcctttcatagacaatgcttct 473
           ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 554 tatcagtcaatcactgatactagtcagttcctccctattcctttcacagacaatgcttct 495

                                                  
Query: 474 agatcttcctctaaagcccctgcaatgtcctacattagt 512
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agatcttcctctaaagcccctgcaatgtcctacattagt 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space:   453306
Effective search space used:   453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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