BAC Information

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BAC

Clone NameMSMg01-544K09
Chromosome9 (Build37)
Map Location 31,670,360 - 31,670,721
singlet/doubletsinglet
Overlap geneBarx2
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
Downstream geneLOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544K09.T7 (MSMg01no544_k09.b1)MSMg01-544K09.TJ (MSMg01no544_k09.g1)
ACCAG609898AG609899
length759793
length of high quality
(start - end)
334 (50 - 383)364 (79 - 442)
definitionCHROMAT_FILE: MSMg01no544_k09.b1 PHD_FILE: MSMg01no544_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:23 2005CHROMAT_FILE: MSMg01no544_k09.g1 PHD_FILE: MSMg01no544_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGTCCTGTTCTCCTTAGATGATGAACAGTGATGTGGGAGTG
TAAGCCAAACAAACCCTTTCCTCCCCAGATTCATTTAACCACAGTATTTC
ATCACAGCAATAGCAACTGAGACACATTGTAATTTATGCCCAAATTGCCT
AATTGGAGCCAGGTAAGTAACTGTACTCTCAGCTGCTCTTGAGACTAAAC
CAGGAGTATCCCTTGAGCCTGGGATTTAAGGCCAGCCTGGTGTACAGAGT
GAGTTCCAGAACAGCCAAGACTACTCAGAGAAACCCTGTCTTGAAAATCA
AAAGAAAAAGTGTTTAAACATTTATATTCTAGAATTTAGGTTTAGATGAT
CTTTACCAAACTCCTTTGTGCCATTAATGGTACAAACCCTTGACACCATG
AATATATTAACGCACTTAGATTTCCTAGGGCCGTTAGCTTCACCCTTACT
AATGGTCCTGGCATGTCTGGATGATGACGAAGGGAAACATACAGATCATC
TCTAGAAACTCAAAACTTCCAAAGTTTGTATAATCTGTTCTAGATGCATT
AATACAGGTTTGTTAAGCCCTCTACTTGGGCTAGAAAGTATTTTTATATT
GTCTCCTCAATATAAAGTAAATCTTTTACCTCCAGGTGTAATCGTGAATG
GTGAAAGTATCCCTGGAATGACCGTGAAAATTGGGGAAAAGGTTTACATA
ATATAAGGA
GGAGACGATATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTAGCAGCACCAAAAATAC
AATGCAGTTTTAAAACGGAAAAAAGAAAAAAGAAAGAAAAGATGATCCTT
GTCAAGCTTAAATCTTTCATATAGAGCATGTCTTTTCATATGTGGAATCT
AGATTTATATTTGTGTACATACACCTGTGTGCATGTGCCTGTGAGCGTGC
TCACATGTGTGCTCCTGTACGGAGGAGATGGAAGGAGAGAGAGGAAAAAA
GTGACACAAGAGATCTTAAGGGATTGGGAGATGGAGAGTGGGACATATTG
ACCCAAGGGATGGTGCAAATGAAATGGGGGAGGGGAGGCAAGGGGGTTGA
GGAAGGGAAGGCAAGAGGAATGGGGGAGGAGAGGCAAAGGAGAGAGGAGG
CAAAGGGGATGGGGGGAGGAATCTAATGTTATGCGGTGATTCTTAATTTA
TAATTCTTTAATTTATAATTTTTCTTTTCTTTATCTTTTTTTTAGCTTTA
TCTTTTTTTTATCCCTTTTTTAATTTTTTTCTCTATTTTTTTTTTCATTT
ATATCATCATCATTTTCAATTTATCGTTCATATATCAATTAGTTAATCAT
TTGTTTCTTATGATCTATGTACTATTTTTTTGTTTTTTTTCCCACTTTTT
ACTATTCATGTTAGCCGCCGCAATACTCTCACACTTATATTTCGTACTAT
TCTTTATCTACCTTTTTACCAAATTTATTAATACCTATATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_k09.g1 MSMg01no544_k09.g1 CHROMAT_FILE:
MSMg01no544_k09.g1 PHD_FILE: MSMg01no544_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:23 2005
         (364 letters)



>mm_chr9_31670160_31670923
          Length = 764

 Score =  638 bits (330), Expect = 0.0
 Identities = 354/362 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtagcagcaccaaaaatacaatgcagttttaaaacggaaaaaagaaaaaagaaagaa 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ttagtagcagcaccaaaaatacaatgcagttttaaaatggaaaaaagaaaaaagaaagaa 260

                                                                       
Query: 61  aagatgatccttgtcaagcttaaatctttcatatagagcatgtcttttcatatgtggaat 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aagatgatccttgtcaagcttaaatctttcatgtagagcatgtcttttcatatgtggaat 320

                                                                       
Query: 121 ctagatttatatttgtgtacatacacctgtgtgcatgtgcctgtgagcgtgctcacatgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ctagatttatatttgtgtacatacacctgtgtgcatgtgcctgtgagcgtgctcacgtgt 380

                                                                       
Query: 181 gtgctcctgtacggaggagatggaaggagagagaggaaaaaagtgacacaagagatctta 240
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gtgctcctgtacgaaggagatggaaggagagagaggaaaaaagtaacacaagagatctta 440

                                                                       
Query: 241 agggattgggagatggagagtgggacatattgacccaagggatggtgcaaatgaaatggg 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggattgggagatggggagtgggacatattgacccaagggatggtgcaaatgaaatggg 500

                                                                       
Query: 301 ggaggggaggcaagggggttgaggaagggaaggcaagaggaatgggggaggagaggcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 501 ggaggggaggcaagggggttgaggaagggaaggcaagaggaatgggggaggggcggcaaa 560

             
Query: 361 gg 362
           ||
Sbjct: 561 gg 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)