BAC Information

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BAC

Clone NameMSMg01-544M12
Chromosome9 (Build37)
Map Location 119,749,019 - 119,958,845
singlet/doubletdoublet
Overlap geneLOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1
Upstream geneItga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a
Downstream geneCcr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544M12.T7 (MSMg01no544_m12.b1)MSMg01-544M12.TJ (MSMg01no544_m12.g1)
ACCAG609999AG610000
length779750
length of high quality
(start - end)		428 (70 - 497)498 (77 - 574)
definitionCHROMAT_FILE: MSMg01no544_m12.b1 PHD_FILE: MSMg01no544_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:33 2005CHROMAT_FILE: MSMg01no544_m12.g1 PHD_FILE: MSMg01no544_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,958,513 - 119,958,845)(119,749,019 - 119,749,516)
sequence
NCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAATAGCTTCCTGTTCCTGTGTTGGTTGTGATAACCATTTCAG
AAGTCTCTCCCAGCCTGTTGCTCACGGCGGCATGTCTGATATCTCCTTGG
CAGTCTGTATGTTTGTGTCGAGGATGACAGACAGACTGAGTCATATCCCC
CACAGGCATATCCAACCCTTTGTTATTGCAACACGATGCTGTCATATTCA
AAGGTCACAAATGAGAACCTCAAAATTGAGTTACCAAAGTGGGAGCCTGG
AGAGATGGCTCAGTGGTTAATAGCACTGGCTGCTCTTCCAGAGGTCTGGG
GTTGGATTCCCAGCAAGCATAGTAGCTTACAATGGTCTATAATATAACTC
TAGTTCCAGATGACCCAACACCCTCTTCTAATTTCTGAGGGCAGCAGACA
TGTGCATTGTGAACATTCAGGCAAACACCCATACATACAAAATAAGTAAA
AAAGAAAAAGAAAGGAACGAATGGAGAGAGAGAAAGAGGGGTAGAGAGAG
AGGTAGAGGGATAGGGTATAGTTTTTTCCTTCTCCCTTATTTTTTGTTTC
TTTTCTTATTTTTTTTCTTAAGTTCTTTTTTTGTTCTCACGTCTTTCGTT
TTTGAATCTTTTACGCACTTATTTCTTTTGAGTAGGAGTTGAAAAGATTA
TTTGTGTATTTCATTATATTTAGTTCTACCTACGTTTCCTTTTCCTCCTT
TTGTCTCTCTCTTTACTTCCATACTTTCN

ACCCATTGGAGTGAGTAGCCTGGAGGCCGCCTGGCTCAAAACAGGGGGGT
GAACTATAGAATGTCCCGCGGAATTCTGTACCGATAAATCCATCCTTCAA
GAACAATAGTGAAGCAGAGACAGTTTCAAACAGGCACTAAGAAAAGTTGA
GTCACCAAAAGATTCCCACTGAAGAGAATAATCAAACAAATGCGTCAAGC
AGAACTGTCGTACATGGTAAGTCTGGGAGGTGGAGGGATGGTGATGGAAA
ACATGCTAATACACAGAAGAAGCTGAAAACACACTGTGGACAGTTCCCAA
AGCCACAATCATATCTGATCTGAGGCGGGAGAAAGTAGCTACAAGTTCAA
TGCAGGATGATAAAAACATTTTAGCTGCGAAAGATTAATGGCATTGAAGC
ATTCGGAACCCTTTGTGTAGTCTAATTAGGCAGGAGGATTAACAAGCTGA
CAGACTTTAGCATGCTAAAATAAGTTGCTAAAGAAATCGACGTAGATTGT
ATAGCTTTTCCCAAGCATGTTGAAAGGGAAATCATAATAATAAGAAAATA
TTTCAGGCATGGGCATTGTTGGGCATTATGCAAAGTGAGATGAGCCACGA
CTCCATTACAAAATGCCAAATGCCGGGGTCTGTGAGACAACTCAGGGGCT
AGGAGAAATTGCTGTGCTGTCTAAGCACCCACTTAACCAGACAGGCAGGC
ACTGTAACTCCCAAAAAGAAGAATGGACAGAAATGGGAATGCCCCTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_m12.b1 MSMg01no544_m12.b1 CHROMAT_FILE:
MSMg01no544_m12.b1 PHD_FILE: MSMg01no544_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:33 2005
         (428 letters)



>mm_chr9_119958513_119959340
          Length = 828

 Score =  636 bits (329), Expect = 0.0
 Identities = 332/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcctgtgttggttgtgataaccatttcagaagtctctcccagcctgttgctcacggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gttcctgtgttggttgtgataaccatttcagaagtctctcccagcctgttgctcacggcg 274

                                                                       
Query: 61  gcatgtctgatatctccttggcagtctgtatgtttgtgtcgaggatgacagacagactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gcatgtctgatatctccttggcagtctgtatgtttgtgtcgaggatgacagacagactga 214

                                                                       
Query: 121 gtcatatcccccacaggcatatccaaccctttgttattgcaacacgatgctgtcatattc 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 213 gtcatatcccccacaggcatatccaaccctttgttattgcaacaccatgctgtcatattc 154

                                                                       
Query: 181 aaaggtcacaaatgagaacctcaaaattgagttaccaaagtgggagcctggagagatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aaaggtcacaaatgagaacctcaaaattgagttaccaaagtgggagcctggagagatggc 94

                                                                       
Query: 241 tcagtggttaatagcactggctgctcttccagaggtctggggttggattcccagcaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tcagtggttaatagcactggctgctcttccagaggtctggggttggattcccagcaagca 34

                                            
Query: 301 tagtagcttacaatggtctataatataactcta 333
           |||||||||||||||||||||||||||||||||
Sbjct: 33  tagtagcttacaatggtctataatataactcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no544_m12.g1 MSMg01no544_m12.g1 CHROMAT_FILE:
MSMg01no544_m12.g1 PHD_FILE: MSMg01no544_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:34 2005
         (498 letters)



>mm_chr9_119748819_119749716
          Length = 898

 Score =  917 bits (474), Expect = 0.0
 Identities = 492/498 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaccgataaatccatccttcaagaacaatagtgaagcagagacagtttcaaacaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaccgataaatccatccttcaagaacaatagtgaagcagagacagtttcaaacaggca 260

                                                                       
Query: 61  ctaagaaaagttgagtcaccaaaagattcccactgaagagaataatcaaacaaatgcgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ctaagaaaagttgagtcaccaaaagattcccactgaagagaataatcaaacgaatgcgtc 320

                                                                       
Query: 121 aagcagaactgtcgtacatggtaagtctgggaggtggagggatggtgatggaaaacatgc 180
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 321 aagcagaactgtcgtacatggtaagtctgggaggcagagggatggtgatggaaaacatgc 380

                                                                       
Query: 181 taatacacagaagaagctgaaaacacactgtggacagttcccaaagccacaatcatatct 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 taatacacagaagaagctgaaaacacactgtggacagtccccaaagccacaatcatatct 440

                                                                       
Query: 241 gatctgaggcgggagaaagtagctacaagttcaatgcaggatgataaaaacattttagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctgaggcgggagaaagtagctacaagttcaatgcaggatgataaaaacattttagct 500

                                                                       
Query: 301 gcgaaagattaatggcattgaagcattcggaaccctttgtgtagtctaattaggcaggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcgaaagattaatggcattgaagcattcggaaccctttgtgtagtctaattaggcaggag 560

                                                                       
Query: 361 gattaacaagctgacagactttagcatgctaaaataagttgctaaagaaatcgacgtaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattaacaagctgacagactttagcatgctaaaataagttgctaaagaaatcgacgtaga 620

                                                                       
Query: 421 ttgtatagcttttcccaagcatgttgaaagggaaatcataataataagaaaatatttcag 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 621 ttgtatagcttttcccaagcatgttgagagggaaatcataataataagaaaatatatcag 680

                             
Query: 481 gcatgggcattgttgggc 498
           ||||||||||||||||||
Sbjct: 681 gcatgggcattgttgggc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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