Query= MSMg01no545_d06.b1 MSMg01no545_d06.b1 CHROMAT_FILE:
MSMg01no545_d06.b1 PHD_FILE: MSMg01no545_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:07 2005
(630 letters)
>mm_chr9_50743829_50744859
Length = 1031
Score = 1189 bits (615), Expect = 0.0
Identities = 624/627 (99%), Gaps = 1/627 (0%)
Strand = Plus / Plus
Query: 5 gaattctctgatataccagagaagggatgccataagcattactttcattgtaagacctag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgatataccagagaagggatgccataagcattactttcattgtaagacctag 264
Query: 65 acatagtttcaataattcaaaccctgatctgctcaaagaaacaattctgatctacccaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatagtttcaataattcaaaccctgatctgctcaaagaaacaattctgatctacccaag 324
Query: 125 agcagatagacttgtttttgtaactatcatgtaactgtacagccatgcaaatgactgtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 agcagatagacttgtttttgtaactatcatgtaactgtacagccatgcaaacgactgtaa 384
Query: 185 taattttacaggatgaatgtgctatctttgttcagtgttacaatctttattaaaacagtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taattttacaggatgaatgtgctatctttgttcagtgttacaatctttattaaaacagtt 444
Query: 245 taactgaaaattaattctacactatgtacatgacttcaataaaactaaatgctacaacct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taactgaaaattaattctacactatgtacatgacttcaataaaactaaatgctacaacct 504
Query: 305 gaagagatgaaagccttctaaaatctttttgggaggggaccaacataaattttgaaaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagagatgaaagccttctaaaatctttttgggaggggaccaacataaattttgaaaaaa 564
Query: 365 aaa-ttaatgtaattttcttcagtaaagacacattagtggctgtcttaagattactattt 423
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaattaatgtaattttcttcagtaaagacacattagtggctgtcttaagattactattt 624
Query: 424 ctatgatgagacactataaccaaaaggaacttggagaagaagtttacttggtttacatag 483
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 ctatgatgagacactataaccaaaaggaacttggagaagaagtttatttggtttacatag 684
Query: 484 cctgaatcatagtacactgagggactaagggaggaactcaaacagggcagaaaccagtag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctgaatcatagtacactgagggactaagggaggaactcaaacagggcagaaaccagtag 744
Query: 544 gcagaagctgatgcagaagccatggaggagtgctgcttactggcttgctcatcatggctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcagaagctgatgcagaagccatggaggagtgctgcttactggcttgctcatcatggctc 804
Query: 604 actcagcctgcttcccaggatcaccag 630
|||||||||||||||||||||||||||
Sbjct: 805 actcagcctgcttcccaggatcaccag 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_d06.g1 MSMg01no545_d06.g1 CHROMAT_FILE:
MSMg01no545_d06.g1 PHD_FILE: MSMg01no545_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:07 2005
(644 letters)
>mm_chr9_50925589_50926629
Length = 1041
Score = 922 bits (477), Expect = 0.0
Identities = 498/507 (98%), Gaps = 5/507 (0%)
Strand = Plus / Minus
Query: 139 ccagatgggactgagaactgggctcagcatctaagtaggcatctatcatgctagttcatt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ccagatgggactgagaactgggctcagcatctaagtaggcatctatcatgctagttcatt 982
Query: 199 ttgattttaaaaaaatctactaaactgagtgaggatgcatacacatttaatcatagaact 258
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 981 ttgattttaaaaaaatctactaaactgagtgaggatgcatacacgtttaatcatagaact 922
Query: 259 caagcaggtgagagacaggaggatcataaattgcaggcttgcctgggctaattagggagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 caagcaggtgagagacaggaggatcataaattgcaggcttgcctgggctaattagggagt 862
Query: 319 ctcaaacttaaaaaacaaaaacg-aaaaaaaaaaaaaccactaaataatacaattgaacc 377
||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct: 861 ctcaaacttaaaaaacaaaaacgaaaaaaaaaaaaaaacac----taatacaattgaacc 806
Query: 378 tgaagttaatgtagaaggaaacacaggtgctttcaagtgctctgtgaataaacaggacaa 437
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 805 tgaagttaatgtagaaggaaacccaggtgctttcaagtgctctgtgaataaacagggcaa 746
Query: 438 caaaagatcacatcacactcaagaactcagccacgtggtgaaaatagtcaaggggtaggg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaaagatcacatcacactcaagaactcagccacgtggtgaaaatagtcaaggggtaggg 686
Query: 498 agacagaaaagattctgcccaaatactgacatcacgaagaggacttatctttaccatctc 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agacagaaaagattctgcccaaatactgacatcacgaagaggacttatctttaccatctc 626
Query: 558 cccatttctgctccttctagaatgttctagaatagagagaaggcatactgcacacaatac 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cccatttctgctccttctagaatgttctagaatagagagaaggcatactgcacacaatac 566
Query: 618 tgcatacgatgctgcacacaacctggt 644
|||||||||||||||||||||||||||
Sbjct: 565 tgcatacgatgctgcacacaacctggt 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1041
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1031
Effective search space: 653654
Effective search space used: 653654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
