Query= MSMg01no545_e05.b1 MSMg01no545_e05.b1 CHROMAT_FILE:
MSMg01no545_e05.b1 PHD_FILE: MSMg01no545_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:11 2005
(672 letters)
>mm_chr9_100892116_100893186
Length = 1071
Score = 982 bits (508), Expect = 0.0
Identities = 535/544 (98%), Gaps = 3/544 (0%)
Strand = Plus / Minus
Query: 1 aaatgcatgggaacaccacacaagagacaggtatgtcactctatgatcttagaaggtaga 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 542 aaatgcatgggaacaccacacaagagacaggtatgtcactctatgattttagaaggtaga 483
Query: 61 taaatgcttttgaattgtgtttcaaatctacttcggctttaaaaaaaaaaaaaactaatt 120
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 482 taaatgcttttgaattgtgtttcaaatctacttcggc-ttaaaaaaaaacaaaactaatt 424
Query: 121 ccattcttcatagaagaaagtataagagccaaaggacagaaaactggtagaaaacatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccattcttcatagaagaaagtataagagccaaaggacagaaaactggtagaaaacatttc 364
Query: 181 ccatatctgaaagtattgatatcagtgatgcaaattcctacaaaccaagagaagaaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ccatatctgaaagtattgatatcagtgatgcaaattcctacaaaccaagagaagaaagac 304
Query: 241 gaaacttgatagaaaaatcatataaaaataaacccttgaaaagacaaaaacagccctaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gaaacttgatagaaaaatcatataaaaataaacccttgaaaagacaaaaacagccctaaa 244
Query: 301 gcacatgagaaaatagtcaagttctctcatcatggtggaactgtgggtagatggctctct 360
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcacatgagaaaatattcaagttttctcatcatggtggaactgtgggtagatggctctct 184
Query: 361 ttgccattcaagtgcaagacctgagctcgaagccccagaacctgcgtaaggctggacaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttgccattcaagtgcaagacctgagctcgaagccccagaacctgcgtaaggctggacaaa 124
Query: 421 gtagcaggtgtctgtaattccagctagtgctcctgattggagctcaagcctggagaatcc 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 123 gtagcaggtgtctgtaattccagctagtgctcctgattggagctcgagcctggagaatcc 64
Query: 481 ctggaca-ctcatggaccggtgacttggtatatacagtggccaactgcaaaagatgctgc 539
||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ctgga-agctcatggaccggcgacttggtatatacagtggccaactgcaaaagatgctgc 5
Query: 540 agaa 543
||||
Sbjct: 4 agaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_e05.g1 MSMg01no545_e05.g1 CHROMAT_FILE:
MSMg01no545_e05.g1 PHD_FILE: MSMg01no545_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:11 2005
(630 letters)
>mm_chr9_100733099_100734128
Length = 1030
Score = 1170 bits (605), Expect = 0.0
Identities = 625/635 (98%), Gaps = 7/635 (1%)
Strand = Plus / Plus
Query: 1 actatgtagatcatgccccacacttaaagggacctgcctgcccctgtgcctattgagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 actatgtagatcatgccccacacttaaagggacctgcctgcccctgtgcctattgagtct 257
Query: 61 gagattgatgacttgtgctagtgtgccacacccatatgtgttg-----tgttttgttttg 115
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 258 gagattgatgacttgtgctagtgtgccacaccc--atgtgttgtgttttgttttgttttg 315
Query: 116 ttttgttttaagttagggctaataatctgataagaaaaaaagataaaattaatttttttg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttttgttttaagttagggctaataatctgataagaaaaaaagataaaattaatttttttg 375
Query: 176 agaaattatcttagagtaggaatatcatcgcaggacaactacattaatgcatgcttgaga 235
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 376 agaaattatcttagagtaggaaaatcatcgcaggacaactacattaatgcatgcttgaga 435
Query: 236 taaatggatatagttctaaaatgtatgagttttctgcctcttttttattttaactaatat 295
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 taaatggatataattctaaaatgtatgagttttctgcctcttttttattttaactaatat 495
Query: 296 ggatgattcttcactgttcagcctaaaacataaagtaactaatgatgaaagacctgtaat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggatgattcttcactgttcagcctaaaacataaagtaactaatgatgaaagacctgtaat 555
Query: 356 atgaatgaagtgatgagatgtgtttcgtagaaatacaagctaaactacagattttcttac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atgaatgaagtgatgagatgtgtttcgtagaaatacaagctaaactacagattttcttac 615
Query: 416 aattcagtaaatgtctcaaagggttttagttttgtaaattattttacatttttacttttt 475
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 616 aattcagtaaatgtctcaaagggttttagctttgtaaattattttacatttttacttttt 675
Query: 476 attattttatgtgttgggcatattttacctgatcctgtgtttgtataccaggcaagtgca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 attattttatgtgttgggcatattttacctgatcctgtgtttgtataccaggcaagtgca 735
Query: 536 gtgcccactaaggcctgaaagaagcattccgatcccctgaaatttgtaaaattataagtg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gtgcccactaaggcctgaaagaagcattccgatcccctgaaatttgtaaaattataagtg 795
Query: 596 gttgtgaaacctgcttgtagatgttggaagtcaaa 630
|||||||||||||||||||||||||||||||||||
Sbjct: 796 gttgtgaaacctgcttgtagatgttggaagtcaaa 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
