BAC Information

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BAC

Clone NameMSMg01-545H04
Chromosome9 (Build37)
Map Location 119,067,813 - 119,068,497
singlet/doubletsinglet
Overlap genenone
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b
Downstream geneEG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545H04.T7 (MSMg01no545_h04.b1)MSMg01-545H04.TJ (MSMg01no545_h04.g1)
ACCAG610507AG610508
length748750
length of high quality
(start - end)
629 (33 - 661)685 (63 - 747)
definitionCHROMAT_FILE: MSMg01no545_h04.b1 PHD_FILE: MSMg01no545_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:25 2005CHROMAT_FILE: MSMg01no545_h04.g1 PHD_FILE: MSMg01no545_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCAGAGC
AGAAGGAGAAAGAAATAGGAAAGTAAAATATAATAGAATAATTATGCACA
CCAGAGCCAACAGAAAAGCAGTCGCACACAAATTAAATCTATACAGCCAT
TGTCCAGGGCTAAGGTTAAGAGAATTGGGAGCAACTGTTTTGTTTGTTTG
TTTGTTTGCTTGTTTGTTTTTTCAAAGAGCTGCTGTGGGCTACTGAGAGG
TCTCCATCCTGGCCTACTGCGGGTAGACCCTTATTTCAGATGGTGGGTCC
CCTGGAGGAATGTGTCTCCTGCTTCTCAGGGTCCCAGACACTATTCTTTT
TTACAAGGAGTTGTCATGGACTTCTGAGATGTCTCCATCCTGGCCTGCTG
TGGGCAGTCCCTGTCATGGTATGCTGTCCCCATCATCTGACCAGCATTCT
GAGGTTCTATGCTCATTCTAGGCTATCAGCATGGCTGAATAGAGAAGGGA
TTTCTTTTTTCTTTTTTTCAAGTTGCTTTTTTTTTTCTTCACAGATTTTT
TTTTAAATCACATCTCTGAGTGTCTTAGTTAGGGTTTTACTGCTGTGAAC
AGACGCCATGACCAAGGCAACTCTTTTTTTTGTTTTTGTTTTTGTTTTTT
GTTTTTTTGAGACAGTGTTTTTCTGTATAGCCCTGGCTGTCCTGGAACTC
ACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTGCATTGAGCAAGGCCAGAGAAGTTCATACAACAT
CAGAAGGACAGGCTCACCTTCTCTACAACCAGGATGGTGGATCTCAAAGA
ACATTTCTAAGTTCCACATCACTGGCCCAAGTCCCCAAATGGAAGTGTGG
AGGCCTCTACCAAGGCACAGGCGCAAAGAATTGCAGACTAGAGGACCACA
GAGCTTCTCTAGCCAGAAGGCAAGGAGGACTAACAGAGGGGTGACAGACG
TTACAACTGCAAGCTCCAAGGCCTACCTCAATTGTAGGAGGACCCTGAGC
TCCACACCCCACATCCTCCCAGCTGCTGCCAGGGGACTCATTTTCCCTCA
CATGGAGAGGTTGTTTTGTGGCTGGCCATTTTAGGATGAAGACTCAACTA
TTTTGCTCATCCCAAAGACTGAATCCTTTGCTTGTTTTTTGTTTTGTTTT
GTTTTGTTTTTGAGACAGTGTCTCGAGCATCTTGGGCCAGCCTTGACCTG
CATATGCACTTGAGAATGATCTTGAGCTCCGCCCCACCCCCACCCCCACC
CCCTTGAACCTTCTGAGTGCTGGGTTGCAAGGTTTGTAACTCCACACTTT
GTTTATTCAAGGCTGGGGGTTGGGGTGAGAACCCATGCAAGCATCCAAAC
AACTAAGCTACATTTCTAGACCCAACTTTTCATCTTTCAATTTTATTTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_h04.g1 MSMg01no545_h04.g1 CHROMAT_FILE:
MSMg01no545_h04.g1 PHD_FILE: MSMg01no545_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:25 2005
         (685 letters)



>mm_chr9_119067613_119068697
          Length = 1085

 Score = 1294 bits (669), Expect = 0.0
 Identities = 681/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgcattgagcaaggccagagaagttcatacaacatcagaaggacaggctcaccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgcattgagcaaggccagagaagttcatacaacatcagaaggacaggctcaccttct 260

                                                                       
Query: 61  ctacaaccaggatggtggatctcaaagaacatttctaagttccacatcactggcccaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacaaccaggatggtggatctcaaagaacatttctaagttccacatcactggcccaagt 320

                                                                       
Query: 121 ccccaaatggaagtgtggaggcctctaccaaggcacaggcgcaaagaattgcagactaga 180
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccaaatggaagtgtggaggtctgtaccaaggcacaggcgcaaagaattgcagactaga 380

                                                                       
Query: 181 ggaccacagagcttctctagccagaaggcaaggaggactaacagaggggtgacagacgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaccacagagcttctctagccagaaggcaaggaggactaacagaggggtgacagacgtt 440

                                                                       
Query: 241 acaactgcaagctccaaggcctacctcaattgtaggaggaccctgagctccacaccccac 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 acaactgcaagctccaaggcctacctcaattgtaggaagaccctgagctccacaccccac 500

                                                                       
Query: 301 atcctcccagctgctgccaggggactcattttccctcacatggagaggttgttttgtggc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 atcctcccagctgctgccaggggactcgttttccctcacatggagaggttgttttgtggc 560

                                                                       
Query: 361 tggccattttaggatgaagactcaactattttgctcatcccaaagactgaatcctttgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggccattttaggatgaagactcaactattttgctcatcccaaagactgaatcctttgct 620

                                                                       
Query: 421 tgttttttgttttgttttgttttgtttttgagacagtgtctcgagcatcttgggccagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttttttgttttgttttgttttgtttttgagacagtgtctcgagcatcttgggccagcc 680

                                                                       
Query: 481 ttgacctgcatatgcacttgagaatgatcttgagctccgccccacccccacccccacccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgacctgcatatgcacttgagaatgatcttgagctccgccccacccccacccccacccc 740

                                                                       
Query: 541 cttgaaccttctgagtgctgggttgcaaggtttgtaactccacactttgtttattcaagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttgaaccttctgagtgctgggttgcaaggtttgtaactccacactttgtttattcaagg 800

                                                                       
Query: 601 ctgggggttggggtgagaacccatgcaagcatccaaacaactaagctacatttctagacc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgggggttggggtgagaacccatgcaagcatccaaacaactaagctacatttctagacc 860

                                    
Query: 661 caacttttcatctttcaattttatt 685
           |||||||||||||||||||||||||
Sbjct: 861 caacttttcatctttcaattttatt 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)