BAC Information

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BAC

Clone NameMSMg01-545H23
Chromosome9 (Build37)
Map Location 9,032,021 - 9,032,605
singlet/doubletsinglet
Overlap gene9030420J04Rik
Upstream gene9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545H23.T7 (MSMg01no545_h23.b1)MSMg01-545H23.TJ (MSMg01no545_h23.g1)
ACCAG610545AG610546
length743734
length of high quality
(start - end)
450 (59 - 508)584 (62 - 645)
definitionCHROMAT_FILE: MSMg01no545_h23.b1 PHD_FILE: MSMg01no545_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:28 2005CHROMAT_FILE: MSMg01no545_h23.g1 PHD_FILE: MSMg01no545_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCTTCTT
CTAGACTAGGCTGGTGGGCCATGAAGCCCCAGGGACTGTCTGTTTCTGTC
TCCCCAGTGTTGTGATTGAACAATCGAACCACCACATCCAGGTGTTTGTT
TGCTTGTTTGTTTCTCTCTCTTTTTTTCTTTTCTCCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTTTCTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATT
CACTCTGTAGATCAGGTTGGCCTTGAGAACTCAGAAATCCGCCTGCCTCT
GCCTCCCAAGTGTGCCACCACTGCCCGGCTGTTTGTTTTTAATGTGGGTC
TAGGGCTGAAACTTTAGTCTTCATGCTTACATGGTAAGCACTTTAATGAG
CAAGTCATCTCTTCAACCCAACTTTCGTCAACTAAAATCCATCAACCAGT
AATCCAAACACATGTAGACCTCTACATGTATGAAGTGGTATTTGATAATG
TTCTTTGCTGTGTATACAGTCAGAAAAAAAGCAAAAAACGAAAAATCTAA
CTCTGTCTATAGACTTTTTCTTCATCATTTTCTTAATCTCTGATCTATGG
CTGTGAAAAGACACTGTGACTAAAGCAACTCTTATAAACGAAAAATTCTA
ATTGGAGGCTTGCTGATGATATCAAAGAGTTAATCAATGGTGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCCAGGACAGCCAGGATACACAGAGAAACCCTGTCTTGAAAACA
TAAAAAACCAAAACAAAATAAAACAAAAAAGTTGGAATAGCATAATCTGT
CAACAAATAATTTGCATTTCTTCTGTAAATATAAAAATGGCTCACTAGAA
TGACAAGAAAAGAAAAATGTATAGAAGGGCCCAGATAATTTGATATGATT
GAATTGATTTTTGTTTCTCTGGGACAAGTTCTAAGCACCACAAGCTTTGT
ATACTTCAAGCTTGTGTTCCTCTCCCTTCAGCCCTTAGAGTGCTGTGATT
ACAGATGCTTGTTGCTGTGCCCAGCCTTGCTCCAGAGTTTAGGTCAATAT
TAAAATATGATACAACTGTCAATACCTGCTGGATGGTTTTAGTTCGTTCT
GGGTGCTGTGTTCATAAGAACACTTTATTATCTCATTTAACCCTCAGCTA
ACCCTCCGAAAACTCTGGAGGTGTGGATTTAATTTTCTATTTTAGAGATG
GAAATGACAAAAGTACAGAGTTTAGGTAATTATAACTAGAATATGCGAAT
ATGCAGAAATATAACAGTGCTGTGCACCTAGTAGCCCTCTAGCCTCTTGG
CCAGCTCTGGAGTATGTTGTATTCCCTCTAGAATTTTCTTAGTCCATGAT
AGTAAAACTATCAGTGATGTTTAAAATGCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_h23.g1 MSMg01no545_h23.g1 CHROMAT_FILE:
MSMg01no545_h23.g1 PHD_FILE: MSMg01no545_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:29 2005
         (584 letters)



>mm_chr9_9031821_9032805
          Length = 985

 Score = 1050 bits (543), Expect = 0.0
 Identities = 576/587 (98%), Gaps = 5/587 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagccagg-atacacagagaaaccctgtcttg-aaaacataaaaaaccaaaacaaaat 58
           |||||||||| |||||||||||||||||| |||| |||||| |||||| |||||||||| 
Sbjct: 201 gacagccaggaatacacagagaaaccctgccttgaaaaaca-aaaaaa-caaaacaaaac 258

                                                                       
Query: 59  aaaacaaaaaagttggaatagcataatctgtcaacaaataatttgcatttcttctgtaaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaaacaaaaaagttggaatagcataatctgtcaacaaataatttgcatttcttctgtaaa 318

                                                                       
Query: 119 tataaaaatggctcactagaatgacaagaaaag-aaaaatgtatagaagggcccagataa 177
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 319 tataaaaatggctcactagaatgacaagaaaagaaaaaatgtatagaagggcccagataa 378

                                                                       
Query: 178 tttgatatgattgaattgatttttgtttctctgggacaagttctaagcaccacaagcttt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttgatatgattgaattgatttttgtttctctgggacaagttctaagcaccacaagcttt 438

                                                                       
Query: 238 gtatacttcaagcttgtgttcctctcccttcagcccttagagtgctgtgattacagatgc 297
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 439 gtatacttcaagcttgtgttcctctcctttcagcccttagagtgctgtgattacagatgc 498

                                                                       
Query: 298 ttgttgctgtgcccagccttgctccagagtttaggtcaatattaaaatatgatacaactg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgttgctgtgcccagccttgctccagagtttaggtcaatattaaaatatgatacaactg 558

                                                                       
Query: 358 tcaatacctgctggatggttttagttcgttctgggtgctgtgttcataagaacactttat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcaatacctgctggatggttttagttcgttctgggtgctgtgttcataagaacactttat 618

                                                                       
Query: 418 tatctcatttaaccctcagctaaccctccgaaaactctggaggtgtggatttaattttct 477
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 619 tatctcatttaaccctcagctaaccctccgcaaactctggaggtatggatttaattttct 678

                                                                       
Query: 478 attttagagatggaaatgacaaaagtacagagtttaggtaattataactagaatatgcga 537
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 679 attttagagatggaaatgacaaaagtacagagtttaagtaattataactagaatatgcga 738

                                                          
Query: 538 atatgcagaaatataacagtgctgtgcacctagtagccctctagcct 584
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atatgcagaaatataacagtgctgtgcacctagtagccctctagcct 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 985
Length adjustment: 10
Effective length of query: 574
Effective length of database: 975
Effective search space:   559650
Effective search space used:   559650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)