Query= MSMg01no546_a05.b1 MSMg01no546_a05.b1 CHROMAT_FILE:
MSMg01no546_a05.b1 PHD_FILE: MSMg01no546_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:09 2005
(706 letters)
>mm_chr9_43916491_43917595
Length = 1105
Score = 1042 bits (539), Expect = 0.0
Identities = 551/557 (98%), Gaps = 5/557 (0%)
Strand = Plus / Minus
Query: 152 gttatctaagaaagtgggtatctttatcactccctggcatgcagccagggcagccatgat 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 gttatctaagaaagtgggtatctttatcactccctggcatgcagccagggcagccatgat 1046
Query: 212 tgaaaggtcctgggtctttgtcagaccagacattggctgcttccacttggtttggcttct 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tgaaaggtcctgggtctttgtcagaccagacattggctgcttccacttggtttggcttct 986
Query: 272 ctgaattagaaaaatgtgtccctttttctgagtggccatagcccctaaaccagaagttaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 ctgaattagaaaaatgtgtccctttttctgagtggccatagcccctaaaccagaagttaa 926
Query: 332 gccctggccaggcaggggttcacatgtatgtggcagctctggggagccagttattctagt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 gccctggccaggcaggggttcacatgtatgtggcagctctggggagccagttattctagt 866
Query: 392 ctgcttgcttgtacctctgtatcatggccccccc--cccccccaggaagcagcctgccct 449
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 865 ctgcttgcttgtacctctgtatcatgg---ccccatcccccccaggaagcagcctgccct 809
Query: 450 gcatcctcagaagaaagggagagaccagtgggaggattttaggtttattaagtgacctct 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gcatcctcagaagaaagggagagaccagtgggaggattttaggtttattaagtgacctct 749
Query: 510 gagaaaaaggcctgccctgggagcagcagagatggagtcagggacctagagggggcacag 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 748 gagaaaaaggcctgccctgggagcagcagagatggagtcagggacctagaggggacacag 689
Query: 570 gactaggaatggagcatcccaccttggagtcctgggccaggacccacagctgccagccta 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gactaggaatggagcatcccaccttggagtcctgggccaggacccacagctgccagccta 629
Query: 630 ctgcattctaaagtcctgggcagaaacccagccactgctccacgctgtcttgacctcaga 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctgcattctaaagtcctgggcagaaacccagccactgctccacgctgtcttgacctcaga 569
Query: 690 cagcctgtctccattca 706
|||||||||||||||||
Sbjct: 568 cagcctgtctccattca 552
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1105
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1095
Effective search space: 762120
Effective search space used: 762120
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_a05.g1 MSMg01no546_a05.g1 CHROMAT_FILE:
MSMg01no546_a05.g1 PHD_FILE: MSMg01no546_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:10 2005
(669 letters)
>mm_chr9_43775748_43776808
Length = 1061
Score = 1139 bits (589), Expect = 0.0
Identities = 649/677 (95%), Gaps = 18/677 (2%)
Strand = Plus / Plus
Query: 1 cctcaccattaaaatccaggaggtgagaagaagtcagaggagaggttctcagactcagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcaccattaaaatccaggaggtgagaagaagtcagaggagaggttctcagactcagaa 260
Query: 61 agtctcactaaactcttggcgtggaaatggccaaagcagaagagagaagaggacaaaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctcactaaactcttggcgtggaaatggccaaagcagaagagagaagaggacaaaggc 320
Query: 121 cttggacccatcaggagacacactcaccattagaaagcaagccgtgtctacctgcctggc 180
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||
Sbjct: 321 cttggacccatcaggagaca----caccattagaaagtaagccatgtctacctgcctggc 376
Query: 181 gtgatggtttccatacctaggacatagttggaacttaatatgcatatctgataaagaaat 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgatggtttccacacctaggacatagttggaacttaatatgcatatctgataaagaaat 436
Query: 241 gattaaccaaattagcaaacaacgaacactcaggtcttcaaaacatactaaggattttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gattaaccaaattagcaaacaacgaacactcaggtcttcaaaacatactaaggattttct 496
Query: 301 agcatttgaccttaggggaaaaagtaaccgtgattcattcgtccacacatccacat-aac 359
|||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |||
Sbjct: 497 agcatttgaccttagggggaaa-gtaaccgtgattcattcgtccacacattcacattaac 555
Query: 360 tcgctcactcgctccataatgctggtccaccccttcgcagcaatccctaccatggatgaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcgctcactcgctccataatgctggtccaccccttcgcagcaatccctaccatggatgaa 615
Query: 420 ttggtgaacgtgatctccaagttcccggcgtgttcattgtgctggctggaggcgagctgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttggtgaacgtgatctccaagttcccggcgtgttcattgtgctggctggaggcgagctgc 675
Query: 480 tg-tcattgtggtaaacatggggaactgctcggcgctgtgtgaggagtctgtgcatattg 538
|| ||| |||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 676 tgctca-----gtaaacatggggaactactcggcactgtgtgaggagtctgtgcatattg 730
Query: 539 cgaaaggaaatcacagaaacagcacagaga------ataaagccaagcctcagacaggcg 592
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 731 cgaaaggaaatcacagaaacagcacagagacagagaataaagccgggcctcagacaggcg 790
Query: 593 gtagcatttcagcggagacctgaagggggtcagagagtgcgccaggcaacatctggagga 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 791 gtagcatttcagcggagacctgaagggggtcagagagtgcgccaggcaacatctggagaa 850
Query: 653 gaaaagggcttcatggc 669
|||||||||||||||||
Sbjct: 851 gaaaagggcttcatggc 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1061
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1051
Effective search space: 692609
Effective search space used: 692609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
