Query= MSMg01no546_e23.b1 MSMg01no546_e23.b1 CHROMAT_FILE:
MSMg01no546_e23.b1 PHD_FILE: MSMg01no546_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:34 2005
(711 letters)
>mm_chr9_76062020_76063131
Length = 1112
Score = 1237 bits (640), Expect = 0.0
Identities = 646/648 (99%), Gaps = 1/648 (0%)
Strand = Plus / Minus
Query: 65 tgggttcttgaaccttccatggaaaccgttgttggattagctggatcatagcctgtaaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 tgggttcttgaaccttccatggaaaccgttgttggattagctggatcatagcctgtaaat 1053
Query: 125 aagttaatatattcccattcacagatagacaaacagacagacagagacagagacacagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 aagttaatatattcccattcacagatagacaaacagacagacagagacagagacacagag 993
Query: 185 ctacacagagagacaaagagagacacacagagacagaaagattctataaattttaatact 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 992 ctacacagagagacaaagagagacacacagagacagaaagattctataagttttaatact 933
Query: 245 ctagaaaaccctgactaatatggccagtaaattgagaaatgctgtcttctcaattactta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 ctagaaaaccctgactaatatggccagtaaattgagaaatgctgtcttctcaattactta 873
Query: 305 gatgcgaaggaaagataattaaacttagagattgatatatttactgtatttgaggatcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gatgcgaaggaaagataattaaacttagagattgatatatttactgtatttgaggatcac 813
Query: 365 aatgggcaccagaaggggaaaatgtgaacaattgaataacacagggtccgagtgggaggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aatgggcaccagaaggggaaaatgtgaacaattgaataacacagggtccgagtgggaggg 753
Query: 425 aaggtaatgaaaccagcaggaacatgatggaaattatagtaggctttatactgaagactc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaggtaatgaaaccagcaggaacatgatggaaattatagtaggctttatactgaagactc 693
Query: 485 atcacataacagaatgagccagcgtgggttgatgaggagatctgttggtgcttaaaaggg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 atcacataacagaatgagccagcgtgggttgatgaggagatctgttggtgcttaaaaggg 633
Query: 545 atgccaggttttatcttccaattattgcctcactgagatgtatctcatttcacacactgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atgccaggttttatcttccaattattgcctcactgagatgtatctcatttcacacactgt 573
Query: 605 gtttgcaacgttgtgctggtacctctccatcaggaggtggagtctaggcttattccccct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtttgcaacgttgtgctggtacctctccatcaggaggtggagtctaggcttattccccct 513
Query: 665 tggaactcagcacaattttgcaattgcctctcgc-aaacattgcagtg 711
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 512 tggaactcagcacaattttgcaattgcctctcgcaaaacattgcagtg 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1112
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1102
Effective search space: 772502
Effective search space used: 772502
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_e23.g1 MSMg01no546_e23.g1 CHROMAT_FILE:
MSMg01no546_e23.g1 PHD_FILE: MSMg01no546_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:34 2005
(677 letters)
>mm_chr9_76015652_76016728
Length = 1077
Score = 1255 bits (649), Expect = 0.0
Identities = 670/677 (98%)
Strand = Plus / Plus
Query: 1 tttttttcatatgaggaaatgtctttgacattaggagttgggtaatctgaaagaaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttttcatatgaggaaatgtctttgacattaggagttgggtaatctgaaagaaaataa 260
Query: 61 ttaaaaattgatattgaaatatttaaaattacactttggctttatcaaattgttataatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaaattgatattgaaatatttaaaattacactttggctttatcaaattgttataatt 320
Query: 121 tgtttcatattacattaaaccacagcaatccagttctatgccaccgtttttataagtcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttcatattacattaaaccacagcaatccagttctatgccaccgtttttataagtcca 380
Query: 181 atgatttgtatgaaagtacgaatgctaaaactttaaaaccttgtccctgccgtgtttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgatttgtatgaaagtacgaatgctaaaactttaaaaccttgtccctgccgtgtttgat 440
Query: 241 caactaaattatggaaacctttttcctacaaaccacgattagagaaaaagatctcgcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caactaaattatggaaacctttttcctacaaaccacgattagagaaaaagatctcgcttt 500
Query: 301 atgggataacttactgagccttgcatatgggcaagagacagaaggcagtcatctgaagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgggataacttactgagccttgcatatgggcaagagacagaaggcagtcatctgaagtt 560
Query: 361 ttgggtttggacattgaagaagattctttctttgcacaagtgattacttcaacgtgtttc 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ttgggtttggacattgaagaagattccttctttgcacaagtgattacttcaacgtgtttc 620
Query: 421 aaagataccacgtttttcagagagccattgataaatgactttctacagaggaaaacgtct 480
||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct: 621 aaagataccacatttttcagagagccattgataaatggcttcctacagaggaaaaagtct 680
Query: 481 ctaaacacgctggcgcccccttctgctcagacctggaaactggctgttttccttccactg 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaaacacgctggtgcccccttctgctcagacctggaaactggctgttttccttccactg 740
Query: 541 ttctaggtctagctcctccacactctgaccattctcctcctcacttcacaatcggaagac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 ttctaggtctagctcctccacactctgaccattctcctcctcacttcacaatctgaagac 800
Query: 601 cttcatcttttgctcttgagcctttaccatacggaaggactactgctggcttctctgggc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttcatcttttgctcttgagcctttaccatacggaaggactactgctggcttctctgggc 860
Query: 661 attgagtctccctgagc 677
|||||||||||||||||
Sbjct: 861 attgagtctccctgagc 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
