BAC Information

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BAC

Clone NameMSMg01-546F22
Chromosome9 (Build37)
Map Location 114,393,286 - 114,393,940
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1
Downstream geneCcr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546F22.T7 (MSMg01no546_f22.b1)MSMg01-546F22.TJ (MSMg01no546_f22.g1)
ACCAG611211AG611212
length757760
length of high quality
(start - end)
669 (30 - 698)637 (62 - 698)
definitionCHROMAT_FILE: MSMg01no546_f22.b1 PHD_FILE: MSMg01no546_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:38 2005CHROMAT_FILE: MSMg01no546_f22.g1 PHD_FILE: MSMg01no546_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCCTATAGGTACAGGATCCGCGGAATTCTTCATACAT
CGAGTTGCTTTTCCTCGCTGCTGAGTTTCTTTGCAGTTCTGGAGAGCAAA
CCTAAGGACGTGTGCATGCCAGGCCAGGAAGCTGCCGCCTCTGAGCTCAA
TTCCAGCCACGAGCTGTGCCTTGTCGGGTGCTTGGTCACCGAGAGAAGAA
ATCAATGCACAGTCTAAGTACTTGTGGGCTGCTCCTTGGAGGACGGGAGG
AAGAAGGAAAAGGAACACGGGAGGGGGAAGACACAGAGCCATGATCTCCT
CTCTAACGGGTCCTGGACAGCAGATCCCATCTGCATGCAAAGGTCTGAAC
TTTCAGGGCCCCCTCAGCAGAGTCTCCTTGCAGGGAGCCAACAGGGGTGT
TTTGTTTGAACCAATGTCTCTCTATGTAGCCCCGGCTGCTGGAATTTCAC
TACGTAGACCAGGCTGCTCTGAACTCAGAGATCCTCCTGCCTCTGCCTCC
TGAGCGCTGCGATTAAAGGTGGGCTTTACCTTGCTTGACTGTTGGCTGCT
TGTTTTTTTAATTAAAAAAAAATTTAACTTTTTTAATGTATTTATTTATT
GTTTCGTTTGTTTGTTTGTTTTTGTGCGACACATCTGTCGCAGAGCACGT
GTAGAAGTTAGAGGACAGCCGGGCGTGGTGGCGCATGCTTTTGATCCCAG
CACTCGTCAGGAGGCAGAAGCAGGCGGATTTCTGAGTTCGAGGCCAGCCT
GGTCTAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTGATCTTTCCACACTAGGATGCTTAATATTTGACTCCC
TATGAGGCTTCATTGCAAAATATAAGTGCAAAGTACATATTTACTATAAT
ATATATGTATATATACACACATATATATAGGATGTAATTTATATAGTATA
TTTTGTTCATATATATATGGAAATTTATATAGTATATTTTATTTATCTTT
AGTGTAATTTATGCTCTCTCTCATTTCTGAGTTGTGTTCACTATGATGTT
ATACATAGTTATACATCCTATGACAATTCTCAGTAAAAAGGATATGGATA
TGCAAGTACATATTGATTTGTGGTGTCTGTTAAATGATAGAAGAGCCAGC
TACATATGAATAAATCTAGGTAGAATGAGGTTCCAGCTGGTTACTCATAC
ACAAGTGTATACACACACACACACACACACACACACACACACACACAATT
ATACAAGCTAGCCCTCAAGGAAAAACACTGCTATATGACAGAAGAATGAG
TGGCATATGAGTACTTCTAGGTAGGGTGAGGTTTTAATTGGTTACTCATT
TACAACTGTATATCCACAGACACACACTCGAATAAGCTATCCCTCAAAGA
AGCACTTATATTATAAAATTGTCTTGTGGTGTCTATTAAATGAGAGAAGA
GTCATCTACATATGAATGAATCTAGTGGGGTTTCAGTTACTTACAAATGG
AAATAGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_f22.b1 MSMg01no546_f22.b1 CHROMAT_FILE:
MSMg01no546_f22.b1 PHD_FILE: MSMg01no546_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:38 2005
         (669 letters)



>mm_chr9_114393161_114394229
          Length = 1069

 Score = 1189 bits (615), Expect = 0.0
 Identities = 648/663 (97%), Gaps = 8/663 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttcatacatcgagttgcttttcctcgctgctgagtttctttgcagttctggaga 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaattcttcatacatcgagttgcttttcctcgctgctgagtttctttgcagttctggaga 721

                                                                       
Query: 67  gcaaacctaaggacgtgtgcatgccaggccaggaagctgccgcctctgagctcaattcca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gcaaacctaaggacgtgtgcatgccaggccaggaagctgccgcctctgagctcaattcca 661

                                                                       
Query: 127 gccacgagctgtgccttgtcgggtgcttggtcaccgagagaagaaatcaatgcacagtct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gccacgagctgtgccttgtcgggtgcttggtcaccgagagaagaaatcaatgcacagtct 601

                                                                       
Query: 187 aagtacttgtgggctgctccttggaggacgggaggaagaaggaaaaggaacacgggaggg 246
           |||||||| |||||||||||||||||||||||       |||||||||||||||||||||
Sbjct: 600 aagtacttctgggctgctccttggaggacggg-------aggaaaaggaacacgggaggg 548

                                                                       
Query: 247 ggaagacacagagccatgatctcctctctaacgggtcctggacagcagatcccatctgca 306
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ggaagacacagagccacgatctcctctctaacgggtcctggacagcagatcccatctgca 488

                                                                       
Query: 307 tgcaaaggtctgaactttcagggccccctcagcagagtctccttgcagggagccaacagg 366
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 487 tgcaaaggtctgacctttcagggccccctcagcagagcctccttgcagggagccaacagg 428

                                                                       
Query: 367 ggtgttttgtttgaaccaatgtctctctatgtagccccggctgctggaatttcactacgt 426
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 427 ggtgttttgtttgagccaatgtctctctatgtagccctggctgctggaatttcactacgt 368

                                                                       
Query: 427 agaccaggctgctctgaactcagagatcctcctgcctctgcctcctgagcgctgcgatta 486
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 367 agaccaggctgctctgaactcagagatcctcctgcttctgcctcctgagcgctgcgatta 308

                                                                       
Query: 487 aaggtgggctttaccttgcttgactgttggctgcttgtttttttaattaaaaaaaaattt 546
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 307 aaggtgggctttaccttgcttgactgttggctgcttg-ttttttaattaaaaaaaaattt 249

                                                                       
Query: 547 aacttttttaatgtatttatttattgtttcgtttgtttgtttgtttttgtgcgacacatc 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aacttttttaatgtatttatttattgtttcgtttgtttgtttgtttttgtgcgacacatc 189

                                                                       
Query: 607 tgtcgcagagcacgtgtagaagttagaggacagccgggcgtggtggcgcatgcttttgat 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgtcgcagagcacgtgtagaagttagaggacagccgggcgtggtggcgcatgcttttgat 129

              
Query: 667 ccc 669
           |||
Sbjct: 128 ccc 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)