Query= MSMg01no546_h09.b1 MSMg01no546_h09.b1 CHROMAT_FILE:
MSMg01no546_h09.b1 PHD_FILE: MSMg01no546_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:46 2005
(338 letters)
>mm_chr9_76388169_76388906
Length = 738
Score = 607 bits (314), Expect = e-178
Identities = 329/334 (98%)
Strand = Plus / Minus
Query: 5 gaattcttccgttgaatttgactcaaaattagtcttttcctgaaaggatattttgcttca 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 368 gaattcttccgttgaatttgactcaaaattagtcttttcctggaaggatattttgcttca 309
Query: 65 tcagatttaatgacatcactgttcagtggcatgcacttgagtatcttttccttggatgag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcagatttaatgacatcactgttcagtggcatgcacttgagtatcttttccttggatgag 249
Query: 125 ataatattctatggtagttcacgcttatgtttgagaatatgtgtgaaggaaaaagaggag 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 248 ataatattctatggtagttcacgctcatgtttgagaatatgtgtgaaggaaaaagaggag 189
Query: 185 gggagggggaagagacaggaagaagctgagaaggaaagagagggatatatagagagtgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 188 gggagggggaagagacaggaagaagctgagaaggaaagagagggatatagagagagtgaa 129
Query: 245 ggagattaaagaaggaagggaggacaagaagggagggtaggtaggggaagaggaagagga 304
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 128 ggagattaaagaaggaagggaggacaagaagggaggggaggtaggggaagaggaagcgga 69
Query: 305 gactgttaaaatagtgctgactatgctgggcatg 338
||||||||||||||||||||||||||||||||||
Sbjct: 68 gactgttaaaatagtgctgactatgctgggcatg 35
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_h09.g1 MSMg01no546_h09.g1 CHROMAT_FILE:
MSMg01no546_h09.g1 PHD_FILE: MSMg01no546_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:46 2005
(597 letters)
>mm_chr9_76225364_76226362
Length = 999
Score = 822 bits (425), Expect = 0.0
Identities = 582/705 (82%), Gaps = 108/705 (15%)
Strand = Plus / Plus
Query: 1 tcatgctgttcatattcctggacaagatcttaatcagaaaggacttttgctatcatcagg 60
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 95 tcatgctgttcatattcctggaaaagatcttaatcagaaagaacttttgctatcatcagg 154
Query: 61 tattaaaactcccttgttatttttattatgtaatgtaggaataaatatatataattagtc 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tattaaaattcccttgttatttttattatgtaatgtaggaataaatatatataattagtc 214
Query: 121 cacaggtatcatcacttaggtagatgtctagctattcccaaattgttatctcataacatt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cacaggtatcatcatttaggtagatgtctagctattcccaaattgttatctcataacatt 274
Query: 181 ttggtattggtttgtcttatttctctgatgggtatgaagaagtgatagtagattatctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttggtattggtttgtcttatttctctgatgggtatgaagaagtgatagtagattatctaa 334
Query: 241 attctatcatgagaagtaaagccagtggcaagtagattcatcaaaagtaaatacat---- 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 attctatcatgagaagtaaagccagtggcaagtagattcatcaaaagtaaatacatataa 394
Query: 296 ------------------------------------------------------------ 296
Sbjct: 395 gaaagtaaaattctgttatctaagacaccacatttttagtaatttgttacaaaagcctta 454
Query: 297 ------------------------------------------taaaattatcattgctag 314
||||||||||||||||||
Sbjct: 455 ataaaatagtgcagcataaagaggaaaaaaaagtaaatacattaaaattatcattgctag 514
Query: 315 cactttgtctaaactccaccccacctccttcccccacacctgactgcacctccaccaaac 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 515 cactttgtctaaactccaccccacctccttcccccacacctgactgcacctccaccagac 574
Query: 375 atattccttctcttcttatctttttgtaaaccacaacaatcattacaaatacacttatgg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 575 atattccttctcttcttatctttttgtaaaccacaacaatcattacaaatacatttatgg 634
Query: 435 tcttgctatgttctttattatttgggtttcctgtttatctgtgactaagccagtgttggt 494
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 635 tcttgctatgttctttattatttgggtttcatatttatctgtgactaagccagtgttggt 694
Query: 495 agactgcagagatccttctacatctgttgtatgcatggctagaattcctccagcctaaga 554
|||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 695 agactgtagagatccttctacatctgttgtatgtatggttagaattcctccagcctaaga 754
Query: 555 actgtgtaatactgggatgaggacaagcaacc--caggtctcagg 597
| |||||| |||||||||||||||| ||||| |||||||||||
Sbjct: 755 gccgtgtaaaactgggatgaggacaaacaacctccaggtctcagg 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 999
Length adjustment: 10
Effective length of query: 587
Effective length of database: 989
Effective search space: 580543
Effective search space used: 580543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
