CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGATGTCTTGTAATTCCTATGGAACTGTAAAGTGAGCTTTCATCT
GAAGGAAGTACTCATACCCATATTCCAGGATATTCTACTTGCTTGATCAT
CTGTGGTTCAAGATCAAAGATAATGGCAGTTTCTAAACCAGACAGAATTT
TTTAGGATTAGGACATGGGTCTTTAATAACTATCTGTGGAAGAATGCTTT
GAACATATCAACATACTGACTTTTTCCAACTAAGCCAATAATTACTTCTG
GATTTTTTTTTGTTTTTTGTTTTTCTTTTTTGTTTGTTTGTTCGTTTTCT
CTTTTTCTTTTTTCTTTATTGTTTGTTTGTTTGTTTGATTTGTTTTTTTT
TTCAGCTTGAAATTTTTAGGAGTCTTACTATTGCAGGCACCATAGAAGTG
AATTTCCCAGATCTCTGAGACACATAGCTAGAGTATGAGCACTAAAGACT
AAATTTTTTCTTTTTTTTTTAATTTTGTTCTTGGTTTTTAAAAATATTTT
TATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCTC
CATACAATCCCCCCACCACTCCCCTACCCACAAGACTAAATTCTTATGTT
TAGCTTTAAACACTGATGTCTTGAATAATTTTCTTTTTTTTTCCATTTTT
TATTAGGCATTTAGC

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGTAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATGTATCCACAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACTCTTTTCCCAAGATACTCACACAATATGTATTCACTGATAAGCG
GATATTAGCCCCAAACCTAGGCAACCCTATATATAAGATATCATTTTGCA
AACATCTGAAATTTTN

Query= MSMg01no546_i02.b1 MSMg01no546_i02.b1 CHROMAT_FILE:
MSMg01no546_i02.b1 PHD_FILE: MSMg01no546_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:49 2005
         (648 letters)



>mm_chr9_5894935_5895984
          Length = 1050

 Score = 1212 bits (627), Expect = 0.0
 Identities = 642/649 (98%), Gaps = 6/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacgatgtcttgtaattcctatggaactgtaaagtgagctttcatctgaaggaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcacgatgtcttgtaattcctatggaactgtaaagtgagctttcatctgaaggaag 261

                                                                       
Query: 65  tactcatacccatattccaggatattctacttgcttgatcatctgtggttcaagatcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tactcatacccatattccaggatattctacttgcttgatcatctgtggttcaagatcaaa 321

                                                                       
Query: 125 gataatggcagtttctaaaccagacagaattttttaggattaggacatgggtctttaata 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 322 gataatggcagtttctaaaccagacagaattttttaggattaggacatgggtctttaaga 381

                                                                       
Query: 185 actatctgtggaagaatgctttgaacatatcaacatactgactttttccaactaagccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 actatctgtggaagaatgctttgaacatatcaacatactgactttttccaactaagccaa 441

                                                                       
Query: 245 taattacttctggatttttttttgttttttgtttttcttttttgtttgtttgttcgtttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taattacttctggatttttttttgttttttgtttttcttttttgtttgtttgttcgtttt 501

                                                                       
Query: 305 ctctttttcttttttctttattgtttgtttgtttgtttgatttgtttttttttt---cag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 502 ctctttttcttttttctttattgtttgtttgtttgtttgatttgtttttttttttttcag 561

                                                                       
Query: 362 cttgaaatttttaggagtcttactattgcaggcaccatagaagtgaatttcccagatctc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttgaaatttttaggagtcttactattgcaggcaccatagaagtgaatttcccagatctc 621

                                                                       
Query: 422 tgagacacatagctagagtatgagcactaaagactaaattttttctttttttttt--aat 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 622 tgagacacatagctagagtatgagcactaaagactaaattttttcttttttttttttaat 681

                                                                       
Query: 480 tttgttcttggtttttaaaaatatttttattaggtattttcctcatttacatttccaatg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttgttcttggtttttaaaaatatttttattaggtattttcctcatttacatttccaatg 741

                                                                       
Query: 540 ctatcccaaaagtcctccatacaatccccccaccactcccctacccacaagactaaattc 599
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 742 ctatcccaaaagtcctccatacaatcccccc-ccactcccctacccacaagactaaattc 800

                                                            
Query: 600 ttatgtttagctttaaacactgatgtcttgaataattttcttttttttt 648
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttatgtttagctttaaacactgatgtcttgaataattttcttttttttt 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space:   663520
Effective search space used:   663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)