Query= MSMg01no547_e19.b1 MSMg01no547_e19.b1 CHROMAT_FILE:
MSMg01no547_e19.b1 PHD_FILE: MSMg01no547_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:53 2005
(631 letters)
>mm_chr9_7945776_7946806
Length = 1031
Score = 1183 bits (612), Expect = 0.0
Identities = 627/636 (98%), Gaps = 9/636 (1%)
Strand = Plus / Plus
Query: 5 ggaattc-ccatgtagaccaggctggccctgaactaattaaataaacctaggatttatga 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggaattcaccatgtagaccaggctggccctgaactaattaaataaacctaggatttatga 255
Query: 64 aaaattaggaattccaagagaaaagagataatgttgaagaaagtgttaaagaattgtaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaaattaggaattccaagagaaaagagataatgttgaagaaagtgttaaagaattgtaaa 315
Query: 124 ttatgatttctgatgtccgttaacttggaagacagttttgagttgggggaagtcaaattc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttatgatttctgatgtccgttaacttggaagacagttttgagttgggggaagtcaaattc 375
Query: 184 tttgctactaaattttcaagaaagaaatgtctttggcaattatttttacatggttctgaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tttgctactaaattttcaagaaagaaatgtctttggcaattatttttacatggttctgaa 435
Query: 244 cagtgatttgattttgcgtaaattgtttgcttaaaaatatagagcagcacagccgggcgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagtgatttgattttgcgtaaattgtttgcttaaaaatatagagcagcacagccgggcgt 495
Query: 304 ggtgcctcacgcctttaatcccagcactcaggaggcagaggcaggtggatttctgagttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggtgcctcacgcctttaatcccagcactcaggaggcagaggcaggtggatttctgagttt 555
Query: 364 gaggccagaggtctacagagtaagttccaggacagccagggctacacagagaaaccctgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaggccagaggtctacagagtaagttccaggacagccagggctacacagagaaaccctgt 615
Query: 424 ctcgaaaaacc-a-------atatatatatatatatatatatatatatatatggcagctg 475
||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctcgaaaaacctatatatatatatatatatatatatatatatatatatatatggcagctg 675
Query: 476 aaccttttttctatcaagtgttaatgtacatgtagctagtcaaatcctccaatgctacca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaccttttttctatcaagtgttaatgtacatgtagctagtcaaatcctccaatgctacca 735
Query: 536 ctcattcacagagtcactcctgaggcaccctgagctgtgccaggaacaaggacaattgtc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcattcacagagtcactcctgaggcaccctgagctgtgccaggaacaaggacaattgtc 795
Query: 596 tcacccagccacacaacactgacactgtcatttcta 631
||||||||||||||||||||||||||||||||||||
Sbjct: 796 tcacccagccacacaacactgacactgtcatttcta 831
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 436 atatatatatatatatatatatatatatatat 467
||||||||||||||||||||||||||||||||
Sbjct: 659 atatatatatatatatatatatatatatatat 628
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 436 atatatatatatatatatatatatatatatat 467
||||||||||||||||||||||||||||||||
Sbjct: 661 atatatatatatatatatatatatatatatat 630
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 436 atatatatatatatatatatatatatatatat 467
||||||||||||||||||||||||||||||||
Sbjct: 663 atatatatatatatatatatatatatatatat 632
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 436 atatatatatatatatatatatatatatatat 467
||||||||||||||||||||||||||||||||
Sbjct: 665 atatatatatatatatatatatatatatatat 634
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 436 atatatatatatatatatatatatatatatat 467
||||||||||||||||||||||||||||||||
Sbjct: 667 atatatatatatatatatatatatatatatat 636
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 436 atatatatatatatatatatatatatatata 466
|||||||||||||||||||||||||||||||
Sbjct: 657 atatatatatatatatatatatatatatata 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_e19.g1 MSMg01no547_e19.g1 CHROMAT_FILE:
MSMg01no547_e19.g1 PHD_FILE: MSMg01no547_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:54 2005
(688 letters)
>mm_chr9_8108174_8109261
Length = 1088
Score = 1315 bits (680), Expect = 0.0
Identities = 686/688 (99%)
Strand = Plus / Minus
Query: 1 agaaataagggggaaatatcagagataaaagtaaactctctgagggcagaacttggcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 agaaataagggggaaatatcagagataaaagtaaactctctgagggcagaacttggcctg 716
Query: 61 aagctatacaaatgagtaagatagtcatcaaaaacaagcagttcttacagtataattaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aagctatacaaatgagtaagatagtcatcaaaaacaagcagttcttacagtataattaat 656
Query: 121 ttgttgtatatgtatgtacagtgaggtatatacatacatacagtgaggtacatcggtagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttgttgtatatgtatgtacagtgaggtatatacatacatacagtgaggtacatcggtagg 596
Query: 181 aaaggaagccaagtgttaaaccaggaaaggctttgataagtaatatgttctagaaataag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aaaggaagccaagtgttaaaccaggaaaggctttgataagtaatatgttctagaaataag 536
Query: 241 tagtgaaagaattggagcaaggttccaatatgtttagaagttttgccaaattaatagggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tagtgaaagaattggagcaaggttccaatatgtttagaagttttgccaaattaatagggg 476
Query: 301 cagactaatagtggaaaatcagataatctagttaatcaaaattacttcttcagagctgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cagactaatagtggaaaatcagataatctagttaatcaaaattacttcttcagagctgcc 416
Query: 361 aaggaaggaaatagaagatggagaagactcaaggatggttccagagacagggtttcatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaggaaggaaatagaagatggagaagactcaaggatggttccagagacagggtttcatca 356
Query: 421 gtgaatagagtgagatgataaaaccatttattaaaacttagggatgaagataaggtggta 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 355 gtgaatagagtgagatgataaaaccatttattaaaacttagggatgaagataaggtagta 296
Query: 481 gatctcaagtaaagcattttgccacaaaaagaagagtgtagctgtgaaggaagaatcaac 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gatctcaagtaaagcattttgtcacaaaaagaagagtgtagctgtgaaggaagaatcaac 236
Query: 541 aggtttaggtagagagtagttgaaaggaagataggtgtcttacttagggtttcactgctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aggtttaggtagagagtagttgaaaggaagataggtgtcttacttagggtttcactgctg 176
Query: 601 tgcacagacaccatgaccaaggcaactcttttaaggacaacatgtacacgggtttggctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tgcacagacaccatgaccaaggcaactcttttaaggacaacatgtacacgggtttggctt 116
Query: 661 acaagttcagaggttcagttcattatca 688
||||||||||||||||||||||||||||
Sbjct: 115 acaagttcagaggttcagttcattatca 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
