Query= MSMg01no547_m19.b1 MSMg01no547_m19.b1 CHROMAT_FILE:
MSMg01no547_m19.b1 PHD_FILE: MSMg01no547_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:31 2005
(627 letters)
>mm_chr9_65317731_65318757
Length = 1027
Score = 596 bits (308), Expect = e-174
Identities = 327/338 (96%), Gaps = 8/338 (2%)
Strand = Plus / Minus
Query: 290 caagatccaggataatcagggctacagaacttgtctgaaaaggaaaaaaaaaaaaaaaaa 349
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1027 caagatccaggataatcagggctacagaacttgtctgaaaagg--------aaaaaaaaa 976
Query: 350 aaaaagctgggtttggaggcacacgcctttcatcctagctctcaggaggcagaggcaggt 409
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 975 aaaaagctgggtttggaggcacatgcctttcatcctagctctcaggaggcagaggcaggt 916
Query: 410 agatctgagtttgaggccagcctggtctacagagtgagttccaggactgccagggctaca 469
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 915 agatctgagtttgaggccagcctggtctacagagtgagttctaggactgccagggctaca 856
Query: 470 cagagaaaccctgtcttgaaaaaccaaaggagggaacagatggaaaaattaacaacaaac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cagagaaaccctgtcttgaaaaaccaaaggagggaacagatggaaaaattaacaacaaac 796
Query: 530 cgaagcagaaaatcagacagagctaaggcctctgagacctgccagtccgagacaggaagc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cgaagcagaaaatcagacagagctaaggcctctgagacctgccagtccgagacaggaagc 736
Query: 590 cccgtcagtatttgctttctagagggtagactcctgag 627
|||||||||||||||||||||||||||||| |||||||
Sbjct: 735 cccgtcagtatttgctttctagagggtagattcctgag 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_m19.g1 MSMg01no547_m19.g1 CHROMAT_FILE:
MSMg01no547_m19.g1 PHD_FILE: MSMg01no547_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:32 2005
(631 letters)
>mm_chr9_65306498_65307528
Length = 1031
Score = 1193 bits (617), Expect = 0.0
Identities = 627/631 (99%), Gaps = 2/631 (0%)
Strand = Plus / Plus
Query: 1 caggccagggaggtttacagaataagattctgtcttaagacacactccccactttcaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagggaggtttacagaataagattctgtcttaagacacactccccactttcaccc 260
Query: 61 cacatgcctaaagtttgggacaaatccacaagccatttggtcccttgtttatgttacttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatgcctaaagtttgggacaaatccacaagccatttggtcccttgtttatgttacttg 320
Query: 121 gtattcacagcatattctgtgaacattccagctttcggaggagagcctcacacaggcatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gtattcacagcatattctgtgaacattccagctttcggaggagagcctcatacaggcatt 380
Query: 181 gatgctgtacttagatgctgtgggaacttccagtggatgccacacaggacagctgcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgctgtacttagatgctgtgggaacttccagtggatgccacacaggacagctgcaaat 440
Query: 241 tcttagcactctgcccaccaagtctacccaagctgtggcctgccttgctcagaaacctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttagcactctgcccaccaagtctacccaagctgtggcctgccttgctcagaaacctgc 500
Query: 301 tgccaacagctgtgtgctgagacagctggacacgcagatgtcaaacattctgtcaaggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgccaacagctgtgtgctgagacagctggacacgcagatgtcaaacattctgtcaaggac 560
Query: 361 aaacagtgtgcttgccatgtgttgaggaacaactgaagattcaaataaccctatgggact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacagtgtgcttgccatgtgttgaggaacaactgaagattcaaataaccctatgggact 620
Query: 421 tttctaagagacacaaaacattgttagattgctcacattgtaataaaatatgcacacaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctaagagacacaaaacattgttagattgctcacattgtaataaaatatgcacacaca 680
Query: 481 cacacacacacacacacacacacatatatatcaaagcctatctatcatgtatttggtgat 540
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacacacacacacacacacata--tatatatcaaagcctatctatcatgtatttggtgat 738
Query: 541 gagctctgaattttgagagctggttaaaggtcttttcagattctgtatctaccacttttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gagctctgaattttgagagctggttaaaggtcttttcagattctgtatctaccacttttt 798
Query: 601 gctataattttgaacaattcagttagctttg 631
|||||||||||||||||||||||||||||||
Sbjct: 799 gctataattttgaacaattcagttagctttg 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
