Query= MSMg01no547_o03.b1 MSMg01no547_o03.b1 CHROMAT_FILE:
MSMg01no547_o03.b1 PHD_FILE: MSMg01no547_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:38 2005
(664 letters)
>mm_chr9_63431913_63432979
Length = 1067
Score = 1050 bits (543), Expect = 0.0
Identities = 642/693 (92%), Gaps = 36/693 (5%)
Strand = Plus / Plus
Query: 5 gaattctacaactcctcaacagcacaggcctttccaccaagcaggagcctgcagcttccc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaattctacaactactcaacagcacaggcctttccaccaagcaggagcctgcagcttccc 237
Query: 65 agaactccacagggcagactctgagctatcaattttgtcaataatgct------gcctcc 118
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 238 agaactccacagggcagactctgagctatcaattttgtcagtaatgcttcctctgcctcc 297
Query: 119 gcctccgccacc---tcctcctcttcttcctcttcctcctcctcctcttctttttcttct 175
||||||||| || |||||||| ||||| ||||||| ||||||| |||||| | |||
Sbjct: 298 gcctccgcctccccctcctcctcctcttcttcttccttctcctccacttctt---cctct 354
Query: 176 tcttcttcctcctcctcttctt---c--cttcttct----cctcctcttcct------ac 220
|| || |||||||||||||||| | |||||||| |||||||||||| ||
Sbjct: 355 tcctcctcctcctcctcttctttttcttcttcttcttcctcctcctcttcctcttcctac 414
Query: 221 tcctccttctttcctctttcttgattgaaatagggtcattccatgcagtcctggctgtct 280
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tcctccttcttttctctttcttgattgaaatagggtcattccatgcagtcctggctgtct 474
Query: 281 tggaagtcgctgtgtagatcaggctggacctgaattcaaagattcacttgcccccc---- 336
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tggaactcgctgtgtagatcaggctggacctgaattcaaagattcacttgccccccgccc 534
Query: 337 --cccccaaccctcattgctgggattaaaggcatgtgccactaggcagtgcagatatgca 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cccccccaaccctcattgctgggattaaaggcatgtgccactaggcagtgcagatatgca 594
Query: 395 ttttaaagcagatgtcatcaatgtttagggataaaacctgtccagggagtcaggcctctc 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttttaaagcagatgtcatcaatgtttagggataaaacctgtccagggagtcaggcctctc 654
Query: 455 tcaaaagagcttccctagtgccaaggagcacagagatgctctcagcagtcagcacgcata 514
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tcaaaaaagcttccctagtgccaaggagcacagagatgctctcagcagtcagcacgcata 714
Query: 515 cttcctttctctcgtgctcatttactggtgctcaaacctcggaggaaaagtaaacttctg 574
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cttcctgtctctcgtgctcatttactggtgctcaaacctcggaggaaaagtaaacttctg 774
Query: 575 accaaagtttaactttcttatggaataacaataac---tctacattttacaatggtctct 631
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 775 accaaagtttaactttcttatggaataacaataacaactatacattttacaatggtctct 834
Query: 632 ctcgatctcagggactttcattgcttttatgag 664
|||||||||||||||||||||||||||||||||
Sbjct: 835 ctcgatctcagggactttcattgcttttatgag 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1067
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1057
Effective search space: 691278
Effective search space used: 691278
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_o03.g1 MSMg01no547_o03.g1 CHROMAT_FILE:
MSMg01no547_o03.g1 PHD_FILE: MSMg01no547_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:38 2005
(601 letters)
>mm_chr9_63600587_63601588
Length = 1002
Score = 1064 bits (550), Expect = 0.0
Identities = 556/558 (99%), Gaps = 1/558 (0%)
Strand = Plus / Minus
Query: 45 tgtatgtgtgtatgtaatgtgtgcacgtatgtgtattgtgtgcatgatgtggtgcacatt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 tgtatgtgtgtatgtaatgtgtgcacgtatgtgtattgtgtgcatgatgtggtgcacatt 943
Query: 105 tggaaatcagaggacagcttgcaggcgatggttctgtccttccaccgtctgagttctgaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tggaaatcagaggacagcttgcaggcgatggttctgtccttccaccgtctgagttctgaa 883
Query: 165 ggtgacattcaggtcatcaggcttggtggcatcaggcttggtggcaggcacctttactgg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ggtgacattcaggtcatcaggcttggtggcatcaggcttggtggcaggcacctttactgg 823
Query: 225 ctgagtcatttcaccagcccagagccttcctggatgggcataaaactgggttaaaatgag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ctgagtcatttcaccagcccagagccttcctggatgggcataaaactgggttaaaatgag 763
Query: 285 gccccagaagagtttacagacatgctgcggagatgtagggtttttgtgttttgccttgcg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gccccagaagagtttacagacatgctgcggagatgtagggtttttgtgttttgccttgcg 703
Query: 345 tcctcattgctttgatggtgggacttaaccagtcactgctctcaaggaactcagcatccc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tcctcattgctttgatggtgggacttaaccagtcactgctctcaaggaactcagcatccc 643
Query: 405 tgccccaggatagagagctggcagggtggccgagggtcgaacagtgctccgggtgggagc 464
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 642 tgccccaggatagagagctggcagggtggccgagggtcgaacagtgctcccggtgggagc 583
Query: 465 tggcatgtgtgttggggaggttggtgtgtgctggatacctgtt-gggtgatggtctgagg 523
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 582 tggcatgtgtgttggggaggttggtgtgtgctggatacctgttggggtgatggtctgagg 523
Query: 524 agtttggactgtgtgaagctcctgggaacttggtctttcctttattattatttatgtgtg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agtttggactgtgtgaagctcctgggaacttggtctttcctttattattatttatgtgtg 463
Query: 584 ttcattgtgcaaactaga 601
||||||||||||||||||
Sbjct: 462 ttcattgtgcaaactaga 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1002
Length adjustment: 10
Effective length of query: 591
Effective length of database: 992
Effective search space: 586272
Effective search space used: 586272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
