Query= MSMg01no548_a23.b1 MSMg01no548_a23.b1 CHROMAT_FILE:
MSMg01no548_a23.b1 PHD_FILE: MSMg01no548_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:53 2005
(547 letters)
>mm_chr9_44288563_44289508
Length = 946
Score = 961 bits (497), Expect = 0.0
Identities = 533/547 (97%), Gaps = 6/547 (1%)
Strand = Plus / Plus
Query: 5 gaattcctgtgagttcgagtccagcctgctctacatagagaattccagactacccagggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtgagttcgagtccagcctgctctacatagagaattccagactacccagggc 264
Query: 65 tatatagtgagagaacctgtcatagtgaagcccaagccgcttgtcatttgtgatagaggc 124
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 265 tatatagtgagagaacctgtcatagtgaaggccaagcctcttgtcatttgtgatagaggc 324
Query: 125 tgatccacatggtaacttcgatccaatgtgtttgctgctcctctgcctgtggtcagtagt 184
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 tgatccacatggtaacttcgagccaatctgtttgctgctcctctgcctgtggtcagtagt 384
Query: 185 ataccctagagaccctaaagacagaaaaaaaatcaaacccaaattcaccacggccctaca 244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 ataccctagagaccctaaagacagaaaaaaa-tcaaacccaaattcaccacggccctaca 443
Query: 245 ctctaaagtatggggatcaca----tccgattctccggacttcagtttcttttcctttaa 300
|||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 ctctaaagtacgaggaccacagagatccgattctccggacttcagtttcttttcctttaa 503
Query: 301 atgaagatagacctgcttcatagaattggggtgatcaaacctttaaactagcacggtgtt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 atgaagatagacctgcttcatagaattggggtgatcaaacctttaaactagcacagtgtt 563
Query: 361 aggacacacttggggatcgtgtgctgagtgggttaaaatgaggaggagctggaggaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggacacacttggggatcgtgtgctgagtgggttaaaatgaggaggagctggaggaagaa 623
Query: 421 tggctcacagcaaggagcacttggtgttcttgaagaggacccaggctgttctcaaaccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggctcacagcaaggagcacttggtgttcttgaagaggacccaggctgttctcaaaccca 683
Query: 481 catggcggctcacacctgtggacaccaggcacacgcgggtgcataatacacatattggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 684 catggcggctcacacctgtggacaccaggcacacgcgggtgcataatacacatat-ggag 742
Query: 541 acactca 547
|||||||
Sbjct: 743 acactca 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space: 502632
Effective search space used: 502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_a23.g1 MSMg01no548_a23.g1 CHROMAT_FILE:
MSMg01no548_a23.g1 PHD_FILE: MSMg01no548_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:53 2005
(349 letters)
>mm_chr9_44432345_44433093
Length = 749
Score = 675 bits (349), Expect = 0.0
Identities = 349/349 (100%)
Strand = Plus / Minus
Query: 1 attggcagtagctactaattctagaaccaggggatccactgcccccccccatacacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 attggcagtagctactaattctagaaccaggggatccactgcccccccccatacacaaac 490
Query: 61 ataggcacctcctgcacacacatgtgcatagccacaccccacctccacataatcacgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ataggcacctcctgcacacacatgtgcatagccacaccccacctccacataatcacgaat 430
Query: 121 aagtctgaaaaataaacgagacatttgtagctataatcagacagccctgctgcctgcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aagtctgaaaaataaacgagacatttgtagctataatcagacagccctgctgcctgcctc 370
Query: 181 atttcctacctgtatcatcaagcctcattatgtcatctcgtaaattggttcctccggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atttcctacctgtatcatcaagcctcattatgtcatctcgtaaattggttcctccggtgg 310
Query: 241 ttgccatcactttggcccctcccatgtgtttgctgacctggatgcaaatctgactgacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttgccatcactttggcccctcccatgtgtttgctgacctggatgcaaatctgactgacct 250
Query: 301 gtagagcaagttctctagtgggaacaatcaccattgctagaaaatagca 349
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtagagcaagttctctagtgggaacaatcaccattgctagaaaatagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
