Query= MSMg01no548_d19.b1 MSMg01no548_d19.b1 CHROMAT_FILE:
MSMg01no548_d19.b1 PHD_FILE: MSMg01no548_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:06 2005
(520 letters)
>mm_chr9_53758255_53759173
Length = 919
Score = 959 bits (496), Expect = 0.0
Identities = 511/516 (99%), Gaps = 1/516 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacacagtctctctgcctccattgccaaagcactaggattaagacatgcatccc 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggaattcacacagtcac-ctgcctccattgccaaagcactaggattaagacatgcatccc 660
Query: 64 cactttttcttcactacttactgtaaaatctgacttgactactgcaaaacatctgctatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cactttttcttcactacttactgtaaaatctgacttgactactgcaaaacatctgctatt 600
Query: 124 taaaacccctcagctgcctgtggttgcttagtgggaattcccccattctaggattctgcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 taaaacccctcagctgcctgtggttgcttagtgggaattcccccattctaggattctgcc 540
Query: 184 atcctttatctttccatcccagagccaggtggtaaccttcctacttcctctcctttagcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atcctttatctttccatcccagagccaggtggtaaccttcctacttcctctcctttagcc 480
Query: 244 tgtgccctctgttagacagtgcaaaagagagagtcggtcaacacttaacacgtcccagga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgtgccctctgttagacagtgcaaaagagagagtcggtcaacacttaacacgtcccagga 420
Query: 304 ataatgtctctagaagaaggaaaagctgttagccaagtaggtgctttgccttgagcacaa 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 419 ataatgtctctagaagaaggaaaagctattagccaagtaggtgctttgccttgagcacaa 360
Query: 364 cagtacttgcacctgcagatgaaggcatgacaccacatgctgggtagaccacatctgtgc 423
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 359 cagtacttgcacctgcagataaaggcatggcaccacatgctgggtagaccacatctgtgc 300
Query: 424 actgcctcttcttatctaatatagaactataacaccaatgcaccttgatggcatgggatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 actgcctcttcttatctaatatagaactataacaccaatgcaccttgatggcatgggatt 240
Query: 484 cttcgctcaagttattctgctctggtggagatagca 519
||||||||||||||||||||||||||||||||||||
Sbjct: 239 cttcgctcaagttattctgctctggtggagatagca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space: 463590
Effective search space used: 463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_d19.g1 MSMg01no548_d19.g1 CHROMAT_FILE:
MSMg01no548_d19.g1 PHD_FILE: MSMg01no548_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:06 2005
(573 letters)
>mm_chr9_53589936_53590908
Length = 973
Score = 1100 bits (569), Expect = 0.0
Identities = 572/573 (99%)
Strand = Plus / Plus
Query: 1 agacataagttctatgaaaatatgacttggggtgcttacaacttgtagaaaattcaagtt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agacataagttctatgaaaatatgacttggggtgcttacaacttatagaaaattcaagtt 260
Query: 61 tcctaaacagcttttaaaccaatagtttatttgtttttcctgtaccccatgagcatgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctaaacagcttttaaaccaatagtttatttgtttttcctgtaccccatgagcatgccc 320
Query: 121 tggtatctacggagttcagaaaacagtgctgggttccttagaactgatgttatagatgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtatctacggagttcagaaaacagtgctgggttccttagaactgatgttatagatgat 380
Query: 181 tgtgagacatcacacaggtgctggatattgaacctggctcctctagaagaaacagctagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgagacatcacacaggtgctggatattgaacctggctcctctagaagaaacagctagt 440
Query: 241 tttcttaaccttacccatgttcccttttgcttttcccctctttgacattttcagtagatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttaaccttacccatgttcccttttgcttttcccctctttgacattttcagtagatg 500
Query: 301 ctattgatctagtttttttaacccctgagtgttggaggatgggacttgtgagcccagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctattgatctagtttttttaacccctgagtgttggaggatgggacttgtgagcccagaga 560
Query: 361 gagggagaggtctcaggtggggaccaggtggagtcaccatctggatgtgaatgaaggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagggagaggtctcaggtggggaccaggtggagtcaccatctggatgtgaatgaaggagg 620
Query: 421 aagtcccaggtgagacaaagatggtcagtaacaggcaacatggctaggaagtaggccagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtcccaggtgagacaaagatggtcagtaacaggcaacatggctaggaagtaggccagg 680
Query: 481 ccagcagggctaggttaggatagctcagaatcagtattgctatagtgcctgaagcttcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagcagggctaggttaggatagctcagaatcagtattgctatagtgcctgaagcttcta 740
Query: 541 ataaatataaaagtctccatgtcattattcaaa 573
|||||||||||||||||||||||||||||||||
Sbjct: 741 ataaatataaaagtctccatgtcattattcaaa 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
