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Target CDS Information

Gene Symbol (Gene ID) Fgfr4 (ENSMUSG00000005320)
Cross Reference
CCDS CCDS26540.1
GO GO:0005654, GO:0005737, GO:0005783, ...show all
MGI_trans_name Fgfr4-001
OTTP OTTMUSP00000048664
OTTT OTTMUST00000089130
RefSeq_mRNA NM_008011.2
RefSeq_peptide NP_032037
RefSeq_peptide_predicted XP_006517162.1
UCSC uc007qqb.1
UniParc UPI0000020E99
Vega_transcript Fgfr4-001, OTTMUST00000089130
Vega_translation 214567, OTTMUSP00000048664
Definition protein_id:ENSMUSP00000005452
translation:
MWLLLALLSIFQGTPALSLEASEEMEQEPCLAPILEQQEQVLTVALGQPVRLCCGRTERG
RHWYKEGSRLASAGRVRGWRGRLEIASFLPEDAGRYLCLARGSMTVVHNLTLLMDDSLTS
ISNDEDPKTLSSSSSGHVYPQQAPYWTHPQRMEKKLHAVPAGNTVKFRCPAAGNPMPTIH
WLKDGQAFHGENRIGGIRLRHQHWSLVMESVVPSDRGTYTCLVENSLGSIRYSYLLDVLE
RSPHRPILQAGLPANTTAVVGSDVELLCKVYSDAQPHIQWLKHVVINGSSFGADGFPYVQ
VLKTTDINSSEVEVLYLRNVSAEDAGEYTCLAGNSIGLSYQSAWLTVLPEEDLTWTTATP
EARYTDIILYVSGSLVLLVLLLLAGVYHRQVIRGHYSRQPVTIQKLSRFPLARQFSLESR
SSGKSSLSLVRGVRLSSSGPPLLTGLVNLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVR
AEAFGMDPSRPDQTSTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQE
GPLYVIVECAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPALVSCAYQVARGMQYL
ESRKCIHRDLAARNVLVTEDDVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFD
RVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMERPPNCPSELYGLMR
ECWHAAPSQRPTFKQLVEALDKVLLAVSEEYLDLRLTFGPFSPSNGDASSTCSSSDSVFS
HDPLPLEPSPFPFSDSQTT

Chromosome 13
Length
Position(start - end)
12684
55155490 - 55168175
Orient to Chromosome plus
Link Location : (13:55155490-55168175)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fgfr4 (ENSMUSG00000005320)
Transcript ID ENSMUST00000005452
Reports
substitution
cSNPs14
Insertion15
Deletion26
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num9
non-synonymous num5
synonymous substitutions 55156319 (p.Thr57Thr), 55156475 (p.Asn109Asn), 55160383 (p.Leu348Leu), 55161144 (p.Thr359Thr), 55161429 (p.Ser426Ser), 55161456 (p.Leu435Leu), 55161516 (p.Pro455Pro), 55166232 (p.Leu586Leu), 55167123 (p.Ala657Ala),
non-synonymous substitutions 55155508 (p.Leu7Val), 55156432 (p.Arg95Leu), 55156464 (p.Val106Ile), 55160303 (p.Ala322Ser), 55168168 (p.Thr798Met),
B6 transcript
(ENSMUST00000005452)
MWLLLALLSIFQGTPALSLEASEEMEQEPCLAPILEQQEQVLTVALGQPVRLCCGRTERG
RHWYKEGSRLASAGRVRGWRGRLEIASFLPEDAGRYLCLARGSMTVVHNLTLLMDDSLTS
ISNDEDPKTLSSSSSGHVYPQQAPYWTHPQRMEKKLHAVPAGNTVKFRCPAAGNPMPTIH
WLKDGQAFHGENRIGGIRLRHQHWSLVMESVVPSDRGTYTCLVENSLGSIRYSYLLDVLE
RSPHRPILQAGLPANTTAVVGSDVELLCKVYSDAQPHIQWLKHVVINGSSFGADGFPYVQ
VLKTTDINSSEVEVLYLRNVSAEDAGEYTCLAGNSIGLSYQSAWLTVLPEEDLTWTTATP
EARYTDIILYVSGSLVLLVLLLLAGVYHRQVIRGHYSRQPVTIQKLSRFPLARQFSLESR
SSGKSSLSLVRGVRLSSSGPPLLTGLVNLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVR
AEAFGMDPSRPDQTSTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQE
GPLYVIVECAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPALVSCAYQVARGMQYL
ESRKCIHRDLAARNVLVTEDDVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFD
RVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMERPPNCPSELYGLMR
ECWHAAPSQRPTFKQLVEALDKVLLAVSEEYLDLRLTFGPFSPSNGDASSTCSSSDSVFS
HDPLPLEPSPFPFSDSQTT*
MSMv4 transcript
MWLLLAVLSIFQGTPALSLEASEEMEQEPCLAPILEQQEQVLTVALGQPVRLCCGRTERG
RHWYKEGSRLASAGRVRGWRGRLEIASFLPEDAGLYLCLARGSMTIVHNLTLLMDDSLTS
ISNDEDPKTLSSSSSGHVYPQQAPYWTHPQRMEKKLHAVPAGNTVKFRCPAAGNPMPTIH
WLKDGQAFHGENRIGGIRLRHQHWSLVMESVVPSDRGTYTCLVENSLGSIRYSYLLDVLE
RSPHRPILQAGLPANTTAVVGSDVELLCKVYSDAQPHIQWLKHVVINGSSFGADGFPYVQ
VLKTTDINSSEVEVLYLRNVSSEDAGEYTCLAGNSIGLSYQSAWLTVLPEEDLTWTTATP
EARYTDIILYVSGSLVLLVLLLLAGVYHRQVIRGHYSRQPVTIQKLSRFPLARQFSLESR
SSGKSSLSLVRGVRLSSSGPPLLTGLVNLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVR
AEAFGMDPSRPDQTSTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQE
GPLYVIVECAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPALVSCAYQVARGMQYL
ESRKCIHRDLAARNVLVTEDDVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFD
RVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMERPPNCPSELYGLMR
ECWHAAPSQRPTFKQLVEALDKVLLAVSEEYLDLRLTFGPFSPSNGDASSTCSSSDSVFS
HDPLPLEPSPFPFSDSQMT*
homology99.38 (800 / 800)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fgfr4 (ENSMUSG00000005320)
Transcript ID ENSMUST00000005452
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCTTTTCTCCATCCTAACAAAGGGGACTTGGCAAATCCCCAGGGATGTCC
TGGGGCCTTGAACGGAGACCAAAGTGCCAGACCAATAGAGAGCAGGTTAGACTAGGAACA
GGGGATGGGTGAGCAAAGGCCCAGGGATAGGATGGGGAGCAACACAGGAGGAGGAGGTCT
GTACATGTGGACCAGACCACCATGTCATCACAACACTATCTATGTAAAAACCAGAGGAAG
TATTCTTTTAAAGCATTATTTATTTTATGTATGTGAGTCCACTGTAGCTGCTCTCAGACA
CAGCAGAAGAAGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG
GAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGGGCGGGGCAGTGGTGGCACACGCCTT
TAATCCCAGCACTTGGGAAGCAGAGGCAGGCAAACTTCTGAGTTTAAGGCCAGCCTGGTC
TACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAAACAA
AAACAAAAACAAAAACCCCAAACAAACAAAAAGAAACAACAAAAAAACTTTTTAGAGTGA
AAATTTAAACTTTTAAAAATAAAAGCACAACTTTTTACAAATTAAAGTTTAAAGTTTTTT
CCTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCCCTCCCCCCCCCCTCTTTTCCGAGAC
TGTGTTTCTCTGTATAGCTCTGGCTGTTCTAGAACTCACTCTGTAGACCAGGCTGGCCTC
GAACTCAGAAACCCACCTGCCTCTGCCTCCCCAGTGCGCTGCCGCCACCCCGACCGACCG
AGATGTATTTTAAATATCCTCTGAAGATCGCTCAGGCCAAGGAGAGGTCAGGTCTCTCTG
ATGTTCTGTGATTTCACGGAAAACCAGAGAGCCTGGTGAGTGCCAAATTGAGGAAGAGCA
GAGGATAGAGCAAGGTAGCAAGTTAGACCTTGCAGGTTGGACGTGGGGCC
1 EXON 1 55152640 55152927 - - 288
CCGGAACGACTGAGACTGGGCGATCCAGTCCCAACCGGGAGCTCCCGCACTAGGGTACCG
GGCTGACATTTGCCGGGTCTCGGACCACGCCTCTCAGATCAGAAGTGGTCCAGGAGGGGC
GGAGTCCGAGGTGGGCGGGGCAGGAGGGGGCAGCCCCCCGCCACGCTGCAGTTGCAGGGA
CATTCCTGGCTCTTCGGCCCGGGGCGGAGGAGCTCCGGGCGGGTGAGTGTGCCAGCCCTG
CCGGGATCGTGACCCGCGCGCGCGGGAGCCGGGCGGCGGAGGAGCCAG
INTRON 1 - 2 55152928 55155437 2510
GTGAGCCGGGCCCCTGCGCCGGGAG..........CCCCCCCAATCTCCCTCTGTTTTAG
2 EXON 2 55155438 55155571 - 1 134
GAAGGTGGTCAGTGGGAAGTCTGGCCCTGATCCTGAGATCAGCTGGAAGGAAATGTGGCT
GCTCTTGGCCGTGTTGAGCATCTTTCAGGGGACACCAGCTTTGTCCCTTGAGGCCTCTGA
GGAAATGGAGCAGG
INTRON 2 - 3 55155572 55156230 659
GTATGGCCTCTAAGGTGGGAGAGGG..........AATGACTCCTGCCATCTGCCCTCAG
3 EXON 3 55156231 55156494 1 1 264
AGCCCTGCCTAGCCCCAATCCTGGAGCAGCAAGAGCAGGTGTTGACGGTGGCCCTGGGGC
AGCCTGTGAGGCTGTGCTGTGGGCGCACTGAGCGTGGTCGTCACTGGTACAAAGAGGGCA
GCCGCCTAGCATCTGCTGGGCGAGTACGGGGTTGGAGAGGCCGCCTGGAGATCGCCAGCT
TCCTTCCTGAGGATGCTGGCCTATACCTCTGCCTGGCCCGTGGCTCCATGACCATCGTAC
ACAACCTTACGTTGCTTATGGATG
INTRON 3 - 4 55156495 55156585 91
GTAAGAGGGTCTGGGCAGGGCTTTA..........GATGCCTTCCTTTGTCCCTGAATAG
4 EXON 4 55156586 55156666 1 1 81
ACTCCTTAACCTCCATCAGTAATGATGAAGACCCCAAGACACTCAGCAGCTCCTCGAGTG
GTCATGTCTACCCACAGCAAG
INTRON 4 - 5 55156667 55156773 107
GTCGGTGCCTCCTCCCAAGGACTCT..........TAATTGCTCTTTCTTTCCTCTCTAG
5 EXON 5 55156774 55156940 1 0 167
CACCCTACTGGACACACCCCCAACGCATGGAGAAGAAACTGCATGCAGTGCCTGCCGGGA
ATACTGTCAAATTCCGCTGTCCAGCTGCAGGGAACCCCATGCCTACCATCCACTGGCTCA
AGGATGGACAGGCCTTCCACGGGGAGAATCGTATTGGAGGCATTCGG
INTRON 5 - 6 55156941 55159093 2153
GTGAGTCTGGACTTCCCAAGTCCAT..........TTCCTCTACTCCTGCCTGCTTCCAG
6 EXON 6 55159094 55159217 0 1 124
CTGCGCCACCAACACTGGAGCCTGGTGATGGAAAGTGTGGTACCCTCGGACCGTGGCACA
TACACATGCCTTGTGGAGAACTCTCTGGGTAGCATTCGCTACAGCTATCTCCTGGATGTG
CTGG
INTRON 6 - 7 55159218 55159922 705
GTGAGTGGATGGGCTGGGCAGGTAG..........GTTGACGGCCTGGCCCGGCCCCCAG
7 EXON 7 55159923 55160113 1 0 191
AGCGGTCCCCGCACCGGCCCATCCTGCAGGCGGGGCTCCCAGCCAACACCACAGCTGTGG
TTGGCAGCGATGTGGAGCTACTCTGCAAGGTGTACAGCGACGCCCAGCCCCACATACAGT
GGCTGAAACACGTCGTCATCAACGGCAGCAGCTTCGGCGCCGACGGTTTCCCCTACGTAC
AAGTCCTGAAG
INTRON 7 - 8 55160114 55160248 135
GTGAGCTTCCTGCTAGCGCCCAGGC..........TGACCTAGTGTGTCCGCTGCTTCAG
8 EXON 8 55160249 55160387 0 1 139
ACAACAGACATCAATAGCTCGGAGGTAGAGGTCTTGTATCTGAGGAACGTGTCCTCTGAG
GATGCAGGAGAGTATACCTGTCTGGCGGGCAACTCCATCGGCCTTTCCTACCAGTCAGCG
TGGCTCACGGTGCTACCAG
INTRON 8 - 9 55160388 55161115 728
GTGAGGGCCCTGCTGAGGGAGAGGG..........CTGTCTATGTTCATCTAACGAGCAG
9 EXON 9 55161116 55161309 1 0 194
AGGAAGACCTCACGTGGACAACAGCAACTCCTGAGGCCAGATACACAGATATCATCCTGT
ATGTATCAGGCTCACTGGTTCTGCTTGTGCTCCTGCTGCTGGCCGGGGTGTATCATCGGC
AAGTCATCCGTGGCCACTACTCTCGCCAGCCTGTCACTATACAAAAGCTGTCCCGTTTCC
CTTTGGCCCGACAG
INTRON 9 - 10 55161310 55161393 84
GTACTGTGCCTGTTCCCCAGCCCCC..........GCAGAACGAATCTCTCACTTTGCAG
10 EXON 10 55161394 55161539 0 2 146
TTCTCTTTGGAGTCGAGGTCCTCTGGCAAGTCAAGCTTGTCCCTGGTGCGAGGTGTCCGT
CTTTCCTCCAGCGGCCCGCCCTTGCTCACGGGCCTTGTGAATCTAGACCTGCCTCTCGAT
CCACTTTGGGAATTCCCCCGGGACAG
INTRON 10 - 11 55161540 55161621 82
GTACACTGAGGAGGCTAAGACTGAG..........AGGCACGGGTCTTCTTGGCCTCTAG
11 EXON 11 55161622 55161743 2 1 122
GTTGGTGCTCGGAAAGCCCCTGGGTGAGGGCTGCTTTGGGCAAGTGGTTCGTGCAGAGGC
CTTTGGTATGGATCCCTCCCGGCCCGACCAAACCAGCACCGTGGCTGTGAAGATGCTGAA
AG
INTRON 11 - 12 55161744 55165889 4146
GTACACATGGCAACCTGGGCAAGGT..........CCTCAGCCCAGCTGTTGCTTTGCAG
12 EXON 12 55165890 55166000 1 1 111
ACAATGCCTCCGACAAGGATTTGGCAGACCTGGTCTCCGAGATGGAGGTGATGAAGCTAA
TCGGAAGACACAAGAACATCATCAACCTGCTGGGTGTCTGCACTCAGGAAG
INTRON 12 - 13 55166001 55166095 95
GTGTGGCAGGAGCAGGGAATCAGAT..........CCTGGTCCACGGCTTCCCTCTGTAG
13 EXON 13 55166096 55166286 1 0 191
GGCCCCTGTACGTGATTGTGGAATGTGCCGCCAAGGGAAACCTTCGGGAATTCCTCCGTG
CCCGGCGCCCCCCAGGCCCTGATCTCAGCCCTGATGGACCTCGGAGCAGCGAAGGACCAC
TCTCCTTCCCGGCCCTGGTCTCCTGTGCCTACCAGGTGGCCCGAGGCATGCAGTATCTGG
AGTCTCGGAAG
INTRON 13 - 14 55166287 55166857 571
GTGTGGACAAAGGACAGTTGTGCTG..........TCCTAAACTCCCTACCTGTCCTCAG
14 EXON 14 55166858 55166980 0 0 123
TGCATCCACCGGGACCTGGCTGCCCGAAATGTGCTGGTGACCGAGGATGATGTGATGAAG
ATCGCTGACTTTGGGCTGGCACGTGGTGTCCACCACATTGACTACTATAAGAAAACCAGC
AAC
INTRON 14 - 15 55166981 55167087 107
GTGAGGGGCACCTCGGAGATACACG..........CACTGTCCCCGCCTCCTTCCTCCAG
15 EXON 15 55167088 55167158 0 2 71
GGCCGCCTGCCAGTCAAATGGATGGCTCCAGAGGCGTTGTTCGACCGCGTGTACACACAC
CAGAGTGACGT
INTRON 15 - 16 55167159 55167399 241
GTGAGTCTGGGAAATGGGTTCTAAG..........TGCTGAGCCACAGTTCTGCCTCCAG
16 EXON 16 55167400 55167537 2 2 138
GTGGTCTTTCGGGATCCTGCTGTGGGAAATCTTCACCCTCGGGGGCTCCCCATACCCTGG
CATTCCGGTGGAGGAGCTCTTCTCACTGCTGCGAGAGGGGCACAGGATGGAGCGGCCCCC
AAACTGCCCCTCAGAGCT
INTRON 16 - 17 55167538 55167805 268
GTAAGCTCACCCTCCTTGCCCCAGT..........ACAAACCTCTTTGACCTGTTCCCAG
17 EXON 17 55167806 55167911 2 0 106
GTATGGGCTAATGAGGGAGTGCTGGCACGCAGCCCCATCTCAGAGGCCTACTTTTAAGCA
GCTGGTGGAAGCTCTGGACAAGGTCCTGCTGGCTGTCTCTGAAGAG
INTRON 17 - 18 55167912 55168025 114
GTACTGCCCATTCCCGCCTTGTGCC..........AGCTGACCAGCTCTGTTCCTTGCAG
18 EXON 18 55168026 55168759 0 - 734
TACCTTGACCTCCGCCTGACCTTTGGACCCTTTTCTCCCTCCAATGGGGATGCCAGCAGC
ACCTGCTCCTCCAGTGACTCGGTTTTCAGCCACGACCCTTTGCCCCTCGAGCCAAGCCCC
TTCCCTTTCTCTGACTCGCAGATGACATGAGCCGGGGAGCAGCAATGTTGTATGGACTAC
GCGGCCCATGGCCGTGGGTCTCCTCGCTGAGCTGCAACCTGATGCATCGACATTTAATGT
TGGCAGTGTCAGGCCTCTGACTTGAGACTACTGCTGTCCCAGATCCTCTCTCTGGCCCTG
TTTTGGGGAGGGCCATTCTTGGTCCTAAGGTTCATAGTTAAGGCCTTCTGTTCCAGCCTT
ATGCTCCCATCTCAGAGTTCAACTCTCATCTCAAGATCATGGCCTTGCCCTTGGACTCAT
CCTCAGAGAAGTTAAGCATTAAGGCCTTGGCACACAGCCTCCGTCTCAGGGGCTCTCCGG
GCCTAGCTGCAAAACTTATGCTCTAAACATTTCTAGTTCCCCCAAACAACCTAGAGGCCT
TGGGACTTCACATCCCCCAGCACACAAGCCTCACCACCCCCTGCCATCCCCCCTCCATTG
CTTGTTCCAGCATCTTGGTGAAAGGGGCATCAGCTCTGGTGTCCCTGAGAGACGAGAAGC
CTATGGGAACGACAGAAGAACATGGCATTTTTATAAATTATTTTTTTGAAATAAATCTCT
GTGTGCCTGGTGGC
3' upstream sequence
TTCCCTGTGTGGCAGGGTGTAGGGTGGGAAGATTTTCCACATTGGGAGTTTGGTCTGGGT
GGCACAGACGACTGAGGAGGTGGGTGCCAGGTCTTCAGCTGGCTTCTGCCTCCAGCTGTG
CTATAGCAGACTCAGAAGCAGATACACACACCCTTGCCTTTGTCCGTCTGTCCATCCGTC
CTACAGAACTATCCTTGTATATGCCACGGTTGGTGAGTGAGTGCTCGAGGGCAGATGAGC
CCACACTACACCATCTGTAAGGCAGGCCCTGTATCCTCTGCACACGCATCCATGTTTGGC
CCAAGACTTGTCCCCAAGGGAGCTGGCGTCCCCTCCCCCATCTGCTCAGCATTAACCAAA
CTGACCGTTAACACAGCACGAAGGAAACGTGAAATCAAGCCTCCAGCCGCTGCCTGCTCC
CACGGTCTGGATCTGCCCGCTCAGGCTCAGGGCTTGTGGGGGCCGTGCCCGCCCTGCCTG
GCCCTGGCCTGTCTCCCAGGCAGCAGCTGGTTACCGCCTGGCTGAGCTGCAGCTGTCCCC
ACTTGCATGATCCTCCCTGGAGGCTGTCACAACCCTGTTCTCAGCCCCCACCCCAGAGAG
ATCAGCTTCCCAGAGCTCTGAGCCTGGAAATGTACTGGACTACATTCTGACAGTTTCAGC
TGCTCCCTAACCCTGAACATTAGGGTGGGCAGGGAGAGGCCGAAAGTGGTTCCAGACTTT
CTGCTCCCTGGTTCCTACAAGCTCTCTGGGAGTGAGGACTGCAAATGTATTTAGGCTTCC
AGAGACTCATGTACAAATTTAAGGGTAGCTCTAAAGAGATGGCTCATTGCTTAAGAGCAC
CTGTAACTTTCCCCAGGCACCTGGTTTTGATTCCCAGCACCTACTACTACTACCACGTGT
GACCCCAGTTCCTAGGCAATCAACATCCTCTTCTGATTTCCATGGGTACCGGACACACAG
ACATATACATGCAGGCAAAAAATTCACATATGTAAAAAGA..........

Sequence Detail Report

Gene Symbol (Gene ID) Fgfr4 (ENSMUSG00000005320)
Transcript ID ENSMUST00000005452
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 800 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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