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Target CDS Information

Gene Symbol (Gene ID) Cd83 (ENSMUSG00000015396)
Cross Reference
CCDS CCDS26481.1
EMBL AF001036, AF001037, AF001038, ...show all
Fantom 2310032L05, A830051D21, F630109O16, ...show all
GO GO:0009897, GO:0014070, GO:0016021, ...show all
goslim_goa GO:0005575, GO:0005623, GO:0005886, ...show all
MGI_trans_name Cd83-201
protein_id AAC83185.1, AAC83186.1, AAI07345.1, ...show all
RefSeq_mRNA NM_001289915.1, NM_009856.3
RefSeq_peptide NP_001276844.1, NP_033986
UCSC uc007qgk.3
UniParc UPI00000213CB
Uniprot/SWISSPROT O88324
Definition protein_id:ENSMUSP00000015540
translation:
MSQGLQLLFLGCACSLAPAMAMREVTVACSETADLPCTAPWDPQLSYAVSWAKVSESGTE
SVELPESKQNSSFEAPRRRAYSLTIQNTTICSSGTYRCALQELGGQRNLSGTVVLKVTGC
PKEATESTFRKYRAEAVLLFSLVVFYLTLIIFTCKFARLQSIFPDISKPGTEQAFLPVTS
PSKHLGPVTLPKTETV

Chromosome 13
Length
Position(start - end)
16470
43785214 - 43801685
Orient to Chromosome plus
Link Location : (13:43785214-43801685)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cd83 (ENSMUSG00000015396)
Transcript ID ENSMUST00000015540
Reports
substitution
cSNPs5
Insertion19
Deletion24
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num3
synonymous substitutions 43801667 (p.Pro191Pro), 43801679 (p.Thr195Thr),
non-synonymous substitutions 43785238 (p.Phe9Leu), 43797567 (p.Pro65Leu), 43799617 (p.Ala124Val),
B6 transcript
(ENSMUST00000015540)
MSQGLQLLFLGCACSLAPAMAMREVTVACSETADLPCTAPWDPQLSYAVSWAKVSESGTE
SVELPESKQNSSFEAPRRRAYSLTIQNTTICSSGTYRCALQELGGQRNLSGTVVLKVTGC
PKEATESTFRKYRAEAVLLFSLVVFYLTLIIFTCKFARLQSIFPDISKPGTEQAFLPVTS
PSKHLGPVTLPKTETV*
MSMv4 transcript
MSQGLQLLLLGCACSLAPAMAMREVTVACSETADLPCTAPWDPQLSYAVSWAKVSESGTE
SVELLESKQNSSFEAPRRRAYSLTIQNTTICSSGTYRCALQELGGQRNLSGTVVLKVTGC
PKEVTESTFRKYRAEAVLLFSLVVFYLTLIIFTCKFARLQSIFPDISKPGTEQAFLPVTS
PSKHLGPVTLPKTETV*
homology98.48 (197 / 197)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cd83 (ENSMUSG00000015396)
Transcript ID ENSMUST00000015540
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ATTTGTGGCCCAATGGAATATGGCACAGCCACCAAGCAGTTGCTGAAACT
ATTTTTAGTATTGTGAAACTGCTTGTAAACTGTTAAACTAAGCTAACACAGGATGAAAAA
GATAATGGGAAGGGAACAGTATTAGAATGCTGTATAAGGATGCAGACATAGAATAGTCAG
TACACCAAAATGTTAAGTGGGGTTGCTTCTGGGAATTAGAGGTGATTTGATCTATTTAAA
AGAAAAATCTAATTTGAGATGGCCATACACTTCTGGATGTGGGCGTCCACTGGAGAATGA
TTGACCTGTGGGGGGAGGGTGGTCTCCCTCCTCCATAGCCGCCAACTATCCATAGCTCCC
CAGTTAGGGGTGGGCAATTGTGAGTCCCTTCCCCCAGTATGCTGAAAGGTTGCCTGCCTT
GAGCATGTGACAATCATCACTGCTCCTGTGACTTCAGAGTCAAGTCCAGCAGACACGGTT
CTCCTTCCAGACCTCTAGCACTTAAAATCTTTCTGTCCTGTCTTCCCCCTGGTCCCTGAG
CCTTGGGGAGCAGATGCAAAGCAGATGGACTCAAGATTCTTTTAGACATTGTTTTCTAAA
AGACTTATGAGCATGTGTGTAATTAATGCTTTAGTATAAAAAGATCTCCCTTGCTCAAAC
AACGTAAACAAGGCCGAGCGAAAACCCGAAAGAAGGCAGCAAGCCAAGGACTGCAGGCGT
TTGCCACTTCTCAGGAAGCCTAGGGTGTCTGTCCCTATCACAAAATCTGGAGAGTAGCAG
GTCGCCACAGCCCTGGGTTTCAGAGGAAGCTACCCACCCTATCTGAATCTGCATGACCCA
CTCGATGGGTTTGAGGGTCATCTAGCTGGTGTGGCGCATGCCATCGCGGCTTCCGAAGCC
TCAGGGCGCGGGGCCGTTCCGCGGAGCTGCTTGTCGCCGCTGGCCAGCCGCAGCAGCAAC
GCGGACTTGGGGACGCGCGCGGGGCGGGGACCAGGCTACCCGCCTCCTCC
1 EXON 1 43785107 43785250 - 1 144
GACTGGGGAGTCCCCGGGGCCGGCGTGCGGGGAAGTCCCAAGCGCGGGTACAAGAGCACG
GCGCGCGCCCAGGGGGCCGGCCCGGACAGTGTCGCAGCGCTCCAGCCATGTCGCAAGGCC
TCCAGCTCCTGCTTCTAGGCTGCG
INTRON 1 - 2 43785251 43785345 95
GTACGGCCCCCAAGCCCGATCGCTC..........TGTTTCTCCCCCCTCTCTCTTGTAG
2 EXON 2 43785346 43785467 1 0 122
CCTGCAGCCTGGCACCCGCGATGGCGATGCGGGAGGTGACGGTGGCTTGCTCCGAGACCG
CCGACTTGCCTTGCACAGCGCCCTGGGACCCGCAGCTCTCCTATGCAGTGTCCTGGGCCA
AG
INTRON 2 - 3 43785468 43797532 12065
GTAAGCTCCACTGGGGTTTGCGCGG..........TTGACTCTTTGCTGCCTCCTCACAG
3 EXON 3 43797533 43797728 0 1 196
GTCTCCGAGAGTGGCACTGAGAGTGTGGAGCTCCTGGAGAGCAAGCAAAACAGCTCCTTC
GAGGCCCCCAGGAGAAGGGCCTATTCCCTGACGATCCAAAACACTACCATCTGCAGCTCG
GGCACCTACAGGTGTGCCCTGCAGGAGCTCGGAGGGCAGCGCAACTTGAGCGGCACCGTG
GTTCTGAAGGTGACAG
INTRON 3 - 4 43797729 43799601 1873
GTGAACTCACCTCACTTGCTTCCTT..........TCACGGGTTCCTTTTCTTTTTTAAG
4 EXON 4 43799602 43799708 1 0 107
GATGCCCCAAGGAAGTTACAGAGTCAACTTTCAGGAAGTACAGGGCAGAAGCTGTGTTGC
TCTTCTCTCTGGTTGTTTTCTACCTGACACTCATCATTTTCACCTGC
INTRON 4 - 5 43799709 43801556 1848
GTAAGTGTCTGGTCAAAGCACCTGT..........CATCTTTTCTTTTCCCTTTTTACAG
5 EXON 5 43801557 43803130 0 - 1574
AAATTTGCACGACTACAAAGCATTTTCCCAGATATTTCTAAACCTGGTACGGAACAAGCT
TTTCTTCCAGTCACCTCCCCAAGCAAACATTTGGGGCCAGTGACCCTTCCCAAGACAGAA
ACAGTATGAGTAGGATCTCCACTGGTTTTTACAAAGCCAAGGGCACATCAGATCAGTGTG
CCTGAATGCCACCCGGACAAGAGAAGAATGAGCTCCATCCTCAGATGGCAACCTTTCTTT
GAAGTCCTTCACCTGACAGTGGGCTCCACACTACTCCCTGACACAGGGTCTTGAGCACCA
TCATATGATCATGAAGCATGGAGTATCACCGCTTCTCTGTGGCTGTCAGCTTAATGTTTC
ATGTGGCTATCTGGTCAACCTCGTGAGTGCTTTTCAGTCATCTACAAGCTATGGTGAGAT
GCAGGTGAAGCAGGGTCATGGGAAATTTGAACACTCTGAGCTGGCCCTGTGACAGACTCC
TGAGGACAGCTGTCCTCTCCTACATCTGGGATACATCTCTTTGAATTTGTCCTGTTTCGT
TGCACCAGCCCAGATGTCTCACATCTGGCGGAAATTGACAGGCCAAGCTGTGAGCCAGTG
GGAAATATTTAGCAAATAATTTCCCAGTGCGAAGGTCCTGCTATTAGTAAGGAGTATTAT
GTGTACATAGAAATGAGAGGTCAGTGAACTATTCCCCAGCAGGGCCTTTTCATCTGGAAA
AGACATCCACAAAAGCGGCAATACAGAGGGATGCCACATTTATTTTTTTAATCTTCATGT
ACTTGTCAAAGAAGAATTTTTCATGTTTTTTCAAAGAAGTGTGTTTCTTTCCTTTTTTAA
AATATGAAGGTCTAGTTACATAGCATTGCTAGCTGACAAGCAGCCTGAGAGAAGATGGAG
AATGTTCCTCAAAATAGGGACAGCAAGCTAGAAGCACTGTACAGTGCCCTGCTGGGAAGG
GCAGACAATGGACTGAGCAACCAGAAGTCTGGCCACAAGATTGTCTGTATGATTCTGGAC
GAGTCACTTGTGGTTTTCACTCTCTGGTTAGTAAACCAGATAGTTTAGTCTGGGTTGAAT
ACAATGGATGTGAAGTTGCTTGGGGAAAGCTGAATGTAGTGAAAACATTGGCAACTCTAC
TGGGCTGTTACCTTGTTGATATCCTAGAGTTCTGGAGCTGAGCGAATGCCTGTCATATCT
CAGCTTTCCCATCAATCCAAACACAGGAGGCTACAAAAAGGACATGAGCATGGTCTTCTG
TGTGAACTCCTCCTGAGAGACGTGGAGACTGGCTCAGCGCTTTGCGCTTGAAGGACTAAT
CACAAGTTCTTGAAGATATGGACCTAGGGGAGCTATTGCGCCACGACAGGAGGAAGTTCT
CAGATGTTGCATTGATGTAACATTGTTGCATTTCTTTAATGAGCTGGGCTCCTTCCTCAT
TTGCTTCCCAAAGAGATTTTGTCCCACTAATGGTGTGCCCATCACCCACACTATGAAAGT
AAAAGGGATGCTGAGCAGATACAGCGTGCTTACCTCTCAGCCACGACTTTCATGCTATTA
AAAGAATGCATGTG
3' upstream sequence
AAGAGGTGTGGTCTTCTTTTCTATCTTTAAAATGATCCCGACTTTAGAGTGAGTTTTTGG
GTGCTGAGTGGAGAGTAAGAATGCAGAAATGGTAGTGGTAAATGACTGGCTGCTTCCCCG
AGTCTGTGGCTGGGACAGGACAGGGGGGGGGGGTGGGGAAGGGACACATGGCTGTCAGAC
TTCTGTGACATGGCACTCCTTTCCAGAGCTGCATCCCTACCAGGTGGTAACGGCCAGCTT
GTCCACCTAGGTAATCACGGGGGAGTGGGGACGGGACCGAAAGGGAGGTTCTGCTTCCAA
ATCATATGTATAAAGTTGGGGCTCCTGACCTTGGGATTCATGGGGTTTTATTGGAGGTTT
TCAAATAGACCCCTAACCTCTAAGCTGTTATGAAAGATCTATACAAGTGTCTGTGGTGGC
TATAAAAGACTCATGGGTGAGGTGCTCTTTGTGAAGATGAAATACACTAGTGCCTGTAAA
AGCTGCAGAACTACTTTGAATGGATTCAACCCATTGTCAAATGCTCTACAAATGAATGCA
CCAGGGCAGCTTAGTCTTATTTTGAGGAATGCAGATGTCCGAAGTTGTGCCATGTCAGTC
AGAAGATTTAGAGTAAGAACAGTTATTGGTTTAATAGATACATTCAGAAGATTGAGAGAG
TCCACAGAACGGCTAATTGTCTGGCAATGTTCAGAGGACAGGAGACCAAGAAAGAAGGTA
AAGGGAACAGAAGCAATGCCAGGGTTCACACAACTTCTGGCAAGCTTGTTTCCTTAAAAG
GAATAAGTTGACTCTGTGGGTGTTGCATGTTGCCTTCGGAGAATGCACAGTGAAACTAAC
TCTCCATAGGCATGAGAGCTATACTGTGAGAGAGACCAGGGAGAGGGGTTGCTCTTGTCA
TTTTAGATAGACTTTACTAGATACATTATTGAAACTTAGTAGCAGGTTGACTCCATGTTT
CAAGTTTACTATTTAGTGTTTGCAAATGTGTCTGTGTCTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Cd83 (ENSMUSG00000015396)
Transcript ID ENSMUST00000015540
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 197 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information