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Target CDS Information

Gene Symbol (Gene ID) Igfbp3 (ENSMUSG00000020427)
Cross Reference
CCDS CCDS24428.1
EMBL AL607124, BC058261, X81581
GO GO:0001558, GO:0001649, GO:0001933, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MEROPS I31.952
MGI_trans_name Igfbp3-001
OTTP OTTMUSP00000005343
OTTT OTTMUST00000011487
protein_id AAH58261.1, CAA57271.1
Reactome R-MMU-381426, R-MMU-392499
RefSeq_mRNA NM_008343.2
RefSeq_peptide NP_032369
UCSC uc007hzi.2
UniParc UPI0000192B41
Uniprot/SWISSPROT P47878
Vega_transcript Igfbp3-001, OTTMUST00000011487
Vega_translation 209097, OTTMUSP00000005343
Definition protein_id:ENSMUSP00000020702
translation:
MHPARPALWAAALTALTLLRGPPVARAGAGAVGAGPVVRCEPCDARALSQCAPPPTAPAC
TELVREPGCGCCLTCALREGDACGVYTERCGTGLRCQPRPAEQYPLRALLNGRGFCANAS
AAGSLSTYLPSQPAPGNISESEEEHNAGSVESQVVPSTHRVTDSKFHPLHAKMDVIKKGH
ARDSQRYKVDYESQSTDTQNFSSESKRETEYGPCRREMEDTLNHLKFLNVLSPRGVHIPN
CDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPGYDTKGKDDVHCLSVQSQ

Chromosome 11
Length
Position(start - end)
5406
7208383 - 7213790
Orient to Chromosome minus
Link Location : (11:7208383-7213790)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Igfbp3 (ENSMUSG00000020427)
Transcript ID ENSMUST00000020702
Reports
substitution
cSNPs0
Insertion12
Deletion14
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000020702)
MHPARPALWAAALTALTLLRGPPVARAGAGAVGAGPVVRCEPCDARALSQCAPPPTAPAC
TELVREPGCGCCLTCALREGDACGVYTERCGTGLRCQPRPAEQYPLRALLNGRGFCANAS
AAGSLSTYLPSQPAPGNISESEEEHNAGSVESQVVPSTHRVTDSKFHPLHAKMDVIKKGH
ARDSQRYKVDYESQSTDTQNFSSESKRETEYGPCRREMEDTLNHLKFLNVLSPRGVHIPN
CDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPGYDTKGKDDVHCLSVQSQ*
MSMv4 transcript
MHPARPALWAAALTALTLLRGPPVARAGAGAVGAGPVVRCEPCDARALSQCAPPPTAPAC
TELVREPGCGCCLTCALREGDACGVYTERCGTGLRCQPRPAEQYPLRALLNGRGFCANAS
AAGSLSTYLPSQPAPGNISESEEEHNAGSVESQVVPSTHRVTDSKFHPLHAKMDVIKKGH
ARDSQRYKVDYESQSTDTQNFSSESKRETEYGPCRREMEDTLNHLKFLNVLSPRGVHIPN
CDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPGYDTKGKDDVHCLSVQSQ*
homology100.00 (293 / 293)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Igfbp3 (ENSMUSG00000020427)
Transcript ID ENSMUST00000020702
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGAGACTGGTACAAAAGAACTCAATAGCAGCGCTATTGCGCTTGGATTTC
AAGTCAGAATGAACGGATTAGCGAGAACTCCAGTCTGCACTGGAGCACATCAGAAGTTGG
TATAGGGGTCCAACGATGACTAAAACTCGTTGTGAACAGTATTCATTTTAAGGGCTGCTT
GGCTACTAATCATGCATGCTTCAGTGTCTCAGTAGTTATTTTAACACAGATGCATCCGCT
AAAAAGATTCTCCCAAACAAGAACTAGAGGAACTTCTCATCTTTAAAAAGAAAAAAACTG
TCCTCACTCCTATCTGGGAAAGTGCAACGACGTATTTGAGTATTTTGAGTCCCGACCTCC
TTGAAAAGCAAATCCTTTGCGCCCATAGCTGTCAACGTGAGGTTGTGCGGTGCTGAGACT
CTGGGAGCTCAAGTGGCCCGTGGTGCAGATTTAAACCTCGAGCTCTAAGGTTCTCCAGAC
CTCAAAGTGATCTGCGCTTTCTCGCTGGGAAATGCCTAATACAGCATACCCTACACGAGG
AATTCCATTGCGGGAACTTCACAAAGTACACAGGCGCTGAATGGGTCCGGGCCAGCTTCC
CAAACATAAACCATCCCTGGAAAGGCCAGCTTAGCCAGGCATCCAGGGGGAGGGGCTATA
GGGTCCGGGACGCCAAATTGGCTGGGAGTCATTGAAGGAAGAGAAGACCAGAGTTCCTGG
AGTGGCTGGGACTCTAGAGACGCAAGGTGGCCTGGAGCGCCCGTGGTTCCCCGTGAAGAG
GTGGCCCTGATACAGGGCTTGCGCACAGGGAGCAGGTGCCCGGTGAAGACGCGCGCAGCG
CGCCCCCGTCCTCGTTCCCGCTTCGTCGGGAGGCGCGGGCCCCGGAGCGGAGCCTGCGCC
GGCCCACCCCCCACCCTCGCCGTTCCGGGGCGTGTCCTCCGCCACCCCGGCTTCTATATA
TCGGCCTGCGCGCCCGGGCTGCCCAGATGCGAGCTTAGAGCGGCGACTGG
1 EXON 1 7213385 7213897 - 1 513
GCGCTGAGGACCTGCTTGCTCGCTGCTCCCATCCCGCCGCCTCATCCCGCCGCCTCATCC
CGCGTGCTCCACTCCGCTCCCCTCCACCGAGCCGTCCACCCGGCGCCATGCATCCCGCGC
GCCCCGCGCTCTGGGCGGCTGCGCTCACTGCCCTCACTCTGCTCCGCGGACCGCCGGTGG
CGCGAGCTGGCGCGGGCGCGGTGGGCGCGGGCCCCGTGGTGCGCTGCGAACCGTGCGACG
CGCGTGCGCTGTCCCAGTGCGCGCCTCCGCCCACCGCGCCCGCGTGCACGGAGCTGGTGC
GAGAGCCCGGCTGCGGCTGCTGCCTGACTTGCGCGCTGCGCGAAGGCGACGCGTGCGGCG
TCTACACGGAGCGCTGTGGCACCGGCCTCCGCTGCCAGCCGCGGCCCGCGGAGCAGTACC
CGCTGAGGGCGCTGCTGAATGGCCGCGGGTTCTGCGCCAACGCCAGCGCTGCAGGCAGCC
TAAGCACCTACCTCCCCTCCCAACCTGCTCCAG
INTRON 1 - 2 7210246 7213384 3139
GTAAGCTGTCCCTGCCACGTGCGCC..........TTCCTTAACCCATATTCTCTCCCAG
2 EXON 2 7210019 7210245 1 0 227
GAAACATCAGTGAGTCCGAGGAGGAGCACAATGCTGGGAGTGTGGAAAGCCAGGTTGTCC
CCAGCACACACCGAGTGACCGATTCCAAGTTCCATCCACTCCATGCCAAGATGGATGTCA
TCAAAAAAGGCCACGCCAGGGACAGCCAGCGCTACAAAGTTGACTATGAGTCTCAAAGCA
CAGACACCCAGAACTTCTCCTCCGAGTCTAAGCGGGAGACAGAATAC
INTRON 2 - 3 7209579 7210018 440
GTGAGAACTTTTTCTTTAGTTGGGG..........GTCAAAACAACAATTGTGTCCCCAG
3 EXON 3 7209459 7209578 0 0 120
GGTCCCTGCCGCAGAGAAATGGAGGACACACTGAATCATCTGAAGTTCCTCAATGTGCTG
AGTCCCAGAGGCGTCCACATCCCAAACTGTGACAAGAAGGGGTTCTATAAGAAGAAGCAG
INTRON 3 - 4 7208509 7209458 950
GTGAGTGGGGTCCGCCGGGATGTTG..........CCGGTCTTGTCTCTCTCTCCCTCAG
4 EXON 4 7208369 7208508 0 - 140
TGCCGCCCTTCCAAAGGCAGAAAGCGGGGCTTCTGCTGGTGTGTGGACAAGTATGGGCAG
CCCTTGCCAGGCTACGACACCAAGGGGAAAGACGACGTACATTGCCTCAGCGTGCAGAGC
CAGTAGATGCTCCGTGCCAC
INTRON 4 - 5 7207507 7208368 862
GTAAGCCAGAGGTTCCGGCCCCGGA..........TTTCTTTCTTTCATCTTCCTTTTAG
5 EXON 5 7206086 7207506 - - 1421
ATAATATGGAGCTCAAATATGCCTTATTTTGCACAAAAGACTGCCAACAACATGATCAGC
AGCTGGCTACAGCCTTGATTTATATATATATATATATATTTTATGTGTGTGTGTGTGTGA
GTGTGGTGAACTGAGTGAAAACAAACACACACACAAACCAAAGTTTAGACAGATTTCTGA
AATGCCTCTGGTCATTTAAATAGTGAACTTGATCATCTTCCTACTTCCCAGTAGTCAACA
AAAAGCAGTTTGAATTTTCCTGTTGCTTCTTATGAGAGACACTCGTGTACTCCAGGCCCC
GGATGCCATCTGCCCCCTAACTCACCCACCCAGTACGGGCTTCAATGCTGCTGGCCCTCT
GCCTTCTTGATTTCAGACGTTCCGTGGCTGATATAGACAAATCCTCTTTCCATCCCCTGT
AAATAAGTGCAGGCCCTATGGAGAATGGGGAAACCCATAACCGAGTGACCCGGACATCTG
GAAGCATATGCCTGAGGCTCATGGTCCTTATTGTGCCATCTCTGAATAAGGGCCTGGCCC
TGTATCCGCAAGTGGCCTGATCTACTTGGGAACTGTGGGAGAGGATATGTGTTGTCTCTC
TTACTAAAAATGACTGAGAATGTTCTAGGGCACTCTGGGAGCCCATAAGGACAAGGATAA
GGACCTTTCTTTGTCAGGCATCTTCTTGATGACTTGGCCCAGCAGAAAGCCCCAAGTGGG
AGGAGCAACATTGGACTCCACGTTCAGAGATGTCGCAAATAATGGTGCGCTTAGTTCTTC
AGATGACTTAAAAAAACAATGTTTTCTGGTCCAGCCTCTCAAAATAAAGTTTGTTGTGAG
GTGGGGCTGCGGGGAGGCAGTTTTTCAAAAACACAGATTTCTTTTCATCTTCCTATCTAA
ACAGGAAAGAGGAGTGGCTTGTCTGAGAGCCTGGTAAGAGCATGGAGAAAATCACCTGTA
TGTTGATCTTGGGGTCCTTCTCAAACTCTCTTTATAATTCACGCATATATGCAGACAAAG
TACGTTCTTAATTGTTAACATTGTATACAACGTAGCCCAGATATAATAGAATCTGTACTA
GATAATCCTAGATGAAGTGTTAGAGATGTTAGGTGATATAACTGCAGACACGCCCAAGGA
AAGGAGCCTGTGTCTGGAGGCTGGGCTGCTCTCCCCCAGGCCGAGGCGGAGGAGGTCTGG
CAACGCAGGGTGAGAGGAGACTGTACTGCATCCCACGGGGTGGACATGCGCTGTACAGAG
CTTTCCTTGAGAGCACAAAGGAATCTCAAGACATTCTGCCTGCCTATCAGCTTTTCTTTA
TTTTTTTAATTAAGTTTTTTGGGGAAAAATGTATTTTTGAAAAGTTTGTCTTGCAATGTA
TTTATAAATAGTAAATAAAGTTTTTATCATTTAAAAAAAAA
3' upstream sequence
GCCCTTTTGTCTGTTTCTGGGTCTTGAGTCACTAAAGAGATTATTCAGAGAGGACAAAAT
ACTCTAGACATAGAAAACTGTCATGAACATGAATAGATACCATAGCTGACTCCATGTCTA
ACCAGAAGCTCAATGGTACAGTTGTTGTGGCCTTGGTTGGCATCCATGCGACACCGGGCC
ACATGCAGAGGAATATCCAGGTCCACTAGGTTATGTTGGCAGCTATTGTCTAGACAGGTA
AAGCAGGTCACTAGGTTGTTTCCATGACAACCTTTGTTGTTTCCTTGCCTTTCCAGTCGG
TGCCCCTGCTTCCCCATGCAGATGATGTGAATGAGATCACTGGCTTTTCTGCCACCACTG
TGCTTGGAGAAGGGGCATGGGCTGAGTCCTGAAAAAGGGGAGAACCCCAAAGGATGCTGC
GATTGCTTCAGTCACTTTGGTTTTAAAATAACAGTTCCATGCCAAAATAATTCAAGTGTG
TCCTAGGACCATGACATCAAACCAATTCCTATTTAGAGCCATGTCATCCAACAGACATCT
GAAGTGATGGTGACGTCACAGCGTTTAGTTGTGTGGGTGTTTGGAGATCTGGGGGTGTAC
AGTGTGACCACAGGGAGGAGCCTATGAAAGTCAGATCAACTGAGATTTAGCTCAGCTGCA
TGTCTGTTGGCCAGGTATGTGCCAGTCCCACACTACATAATCGGAAAAGACATACTCCCC
TGCTGGCTTTATCAATGCACGGGTCCCCTAAGCTAAAGCATGCGGTTTTCACAGTCAGGC
CAGTCAGTGCCTCTGATTACGACATTACAATGCTATATTGAGGATGGAAACCGATAGTGT
GTTCATAGAAGGACCATAGAAAGCTGCTGCCAGAGAAAGACCCTTGCAAACCTGAGAACT
GCTCTTTTTTTTTTTTTTCTTTTTGCTATCCAATACTCTGTTTCAGAGACAAATCCACCT
GACCAGTCCCTGCAGACATGGGGAACTTCATTGTTCCTGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Igfbp3 (ENSMUSG00000020427)
Transcript ID ENSMUST00000020702
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 293 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information