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Target CDS Information

Gene Symbol (Gene ID) Prkch (ENSMUSG00000021108)
Cross Reference
CCDS CCDS25976.1
ChEMBL CHEMBL4992
EMBL AK164044, BC031121, D90242
Fantom C430032B21
GO GO:0004699, GO:0005515, GO:0005524, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Prkch-001
OTTP OTTMUSP00000037480
OTTT OTTMUST00000072699
protein_id AAH31121.1, BAA14288.1, BAE37603.1
Reactome R-MMU-109582, R-MMU-114508, R-MMU-162582, ...show all
RefSeq_mRNA NM_008856.3
RefSeq_peptide NP_032882
UCSC uc007nwn.1
UniParc UPI0000021AFE
Uniprot/SWISSPROT P23298
Vega_transcript OTTMUST00000072699, Prkch-001
Vega_translation 213198, OTTMUSP00000037480
Definition protein_id:ENSMUSP00000021527
translation:
MSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTK
QKTNKPTYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTAGTSDTFEG
WVDLEPEGKVFVVITLTGSFTEATLQRDRIFKHFTRKRQRAMRRRVHQVNGHKFMATYLR
QPTYCSHCREFIWGVFGKQGYQCQVCTCVVHKRCHHLIVTACTCQNNINKVDAKIAEQRF
GINIPHKFNVHNYKVPTFCDHCGSLLWGIMRQGLQCKICKMNVHIRCQANVAPNCGVNAV
ELAKTLAGMGLQPGNISPTSKLISRSTLRRQGKEGSKEGNGIGVNSSSRFGIDNFEFIRV
LGKGSFGKVMLARIKETGELYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLF
CCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHEKGIIYRDL
KLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAM
GVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSL
TQGGEHEILRHPFFKEIDWAQLNHRQLEPPFRPRIKSREDVSNFDPDFIKEEPVLTPIDE
GHLPMINQDEFRNFSYVSPELQL

Chromosome 12
Length
Position(start - end)
191894
73585163 - 73777058
Orient to Chromosome plus
Link Location : (12:73585163-73777058)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Prkch (ENSMUSG00000021108)
Transcript ID ENSMUST00000021527
Reports
substitution
cSNPs3
Insertion117
Deletion134
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 73585498 (p.Ala112Ala), 73585522 (p.Gly120Gly), 73700194 (p.Asn282Asn),
non-synonymous substitutions
B6 transcript
(ENSMUST00000021527)
MSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTK
QKTNKPTYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTAGTSDTFEG
WVDLEPEGKVFVVITLTGSFTEATLQRDRIFKHFTRKRQRAMRRRVHQVNGHKFMATYLR
QPTYCSHCREFIWGVFGKQGYQCQVCTCVVHKRCHHLIVTACTCQNNINKVDAKIAEQRF
GINIPHKFNVHNYKVPTFCDHCGSLLWGIMRQGLQCKICKMNVHIRCQANVAPNCGVNAV
ELAKTLAGMGLQPGNISPTSKLISRSTLRRQGKEGSKEGNGIGVNSSSRFGIDNFEFIRV
LGKGSFGKVMLARIKETGELYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLF
CCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHEKGIIYRDL
KLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAM
GVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSL
TQGGEHEILRHPFFKEIDWAQLNHRQLEPPFRPRIKSREDVSNFDPDFIKEEPVLTPIDE
GHLPMINQDEFRNFSYVSPELQL*
MSMv4 transcript
MSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTK
QKTNKPTYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTAGTSDTFEG
WVDLEPEGKVFVVITLTGSFTEATLQRDRIFKHFTRKRQRAMRRRVHQVNGHKFMATYLR
QPTYCSHCREFIWGVFGKQGYQCQVCTCVVHKRCHHLIVTACTCQNNINKVDAKIAEQRF
GINIPHKFNVHNYKVPTFCDHCGSLLWGIMRQGLQCKICKMNVHIRCQANVAPNCGVNAV
ELAKTLAGMGLQPGNISPTSKLISRSTLRRQGKEGSKEGNGIGVNSSSRFGIDNFEFIRV
LGKGSFGKVMLARIKETGELYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLF
CCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHEKGIIYRDL
KLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAM
GVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSL
TQGGEHEILRHPFFKEIDWAQLNHRQLEPPFRPRIKSREDVSNFDPDFIKEEPVLTPIDE
GHLPMINQDEFRNFSYVSPELQL*
homology100.00 (684 / 684)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Prkch (ENSMUSG00000021108)
Transcript ID ENSMUST00000021527
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TAGGAGACAAAACCTGTAGAAGTCACGAGATGGGTAAACTTAGGGTCTGC
CCACTCTGACAATAACAACCTAGAGTGTTTGTTCCTAGAAGAGGCAGCTGTAAGCCACTG
TGTGTCAGGGTGGCGCGTGTGAACACTTTGCTGCCCTTATAATGCAGGACTAGGTGGACC
AGCAAACCGCCTCTTGCGGAGGAAGGGACTTATTACATCTTGGCCTTGTCAGTCTCCAGC
AGAACCAATCTTTCCTGCTCTTTGTGCAGTGACACACCTCTCCCAGGAAGGAGTACAGGA
TTTCCATCATTACCATTGCCCTATTTAAAAAATACGCAAACAAAACAACTAATTACTCTC
TGCCAAAAAGGCACATAAACAGGATGAGTCTAAGCTGAACCTGGGATGACCCATTCCGGT
AAAGATTAGGAAAGGGACCTCCCCTTCCCCACAGAACACCCGCCTCTGGCTAGGGCTCTG
TCACCCTCGGGCAGGGTCTCCAGGCCACTACTTAGGGTGGGAGGTAGGAACTCCCTGCTG
CTGATTTTCCGCATCCACCCGTCCTGCCAATTCTCTCCCCGGCTGTCTCCCGCGCCTCAG
GTGTTTGCTGGCGGTGGGCCTGGAATCCTTTCTTTTTGTCCAGCCCCTTAGGGCAGCCTC
CAGCCCGAAACGCACCGCCAACCCGGCCACCAGGAGCAGGGATCCGCGAGCACTCAGGGC
GGGAACCGCCCCTGGGGTGGGTGGAGAGTGCGGGCCCCCTTCACCGCTTAACCCGGGCAC
CCACCCCTCAAGGCGGTGCTGCCCGCGGTGCGCCACGCCCCCGGGGTCCGGAAGGCGTGG
CAGCCCGCACCGGGCTTCTGAGAACTTGGAGCCTGTCGGCGCGCGGCTCTGGCCGGGATG
CGGCTGCGGTTGCTGCTGCTGCTGCTGCTTCCTGGTTCTCAGCTCACCGAGTGGGGGAGA
GCGTGAGCCCGCGGAGGCGGGGGCAGGAGGAACGGGCGGAGGCGGGGGCA
1 EXON 1 73584797 73585525 - 0 729
GAGACGCCAAAGCTGGAGCTAGCCGGACGGGTCGCTCCTGCTCTCCGGGGAGACTATCTG
GCCGGCCCTGGAGAAGGGGAGAGCCCCGCGCGCTCCAGGAGGACGATCGGGAGCCCAGCA
GCCCGCCGAGGGCTCGGAGCCCGGCTCCCCTCCTTTCCACCTCAGGAGAAAGGGCGGGAG
GGAAGGAGGGGAGGGGAAGAGCCCTCCGAGGAGGCAGAATGGCCGGTCGCAGGGGGCTCG
GGCGCTGCTTCTCCCCGGAGCTGCCTCCACGCCCGTGGCAGCGGAGAGGACTGCCCTGAG
CCCGGGCTCCGGGTTCCCCAGTGCCAGCCAGCGCGGCCCCCTCGGGGCTCCGGCAGCAGT
GCCGGCATGTCGTCCGGCACGATGAAGTTCAATGGCTATCTGAGGGTCCGCATCGGAGAG
GCTGTAGGGCTGCAGCCCACCCGCTGGTCCCTGCGGCACTCGCTCTTCAAAAAGGGCCAC
CAGCTGCTGGACCCCTACCTGACGGTGAGCGTAGACCAGGTACGCGTGGGCCAGACCAGC
ACAAAGCAGAAGACCAACAAACCCACCTACAACGAGGAGTTCTGCGCCAATGTCACCGAC
GGCGGCCACCTGGAGCTAGCCGTCTTCCACGAGACGCCCCTGGGTTATGACCACTTTGTG
GCCAACTGCACGCTGCAGTTCCAGGAGCTGTTGCGCACGGCGGGTACCTCGGACACCTTC
GAGGGTTGG
INTRON 1 - 2 73585526 73649291 63766
GTAAGTAGCGATCGCCTCGCTCCTC..........ATAATGTGCTTCTCTCTCTTTCTAG
2 EXON 2 73649292 73649355 0 1 64
GTGGATCTGGAGCCTGAGGGGAAAGTGTTTGTGGTAATAACCCTAACAGGGAGTTTCACT
GAAG
INTRON 2 - 3 73649356 73691547 42192
GTAAGAGCAAGTTGTGAGTGGTTTC..........TGTCTTCCTTTCTTGTAACACACAG
3 EXON 3 73691548 73691698 1 2 151
CCACTCTCCAGAGAGACCGCATCTTCAAGCATTTTACCAGGAAGCGCCAAAGGGCTATGC
GAAGACGAGTCCATCAAGTGAACGGACATAAGTTCATGGCCACGTACCTGAGGCAGCCCA
CCTACTGCTCTCATTGCCGAGAGTTCATCTG
INTRON 3 - 4 73691699 73692931 1233
GTGAGACGGCCTGCTTACCCCCACC..........TTTTTCTCCCTTTTGTCTTGAACAG
4 EXON 4 73692932 73692966 2 1 35
GGGAGTATTTGGGAAACAGGGTTATCAATGCCAAG
INTRON 4 - 5 73692967 73696186 3220
GTAAGAAAAACATGTTTACAACCGT..........GTAATTGCTGGATTTAATTTCCCAG
5 EXON 5 73696187 73696275 1 0 89
TGTGCACCTGCGTCGTCCATAAACGCTGCCATCATCTAATTGTTACAGCCTGCACTTGCC
AAAACAATATTAACAAAGTGGATGCCAAG
INTRON 5 - 6 73696276 73697916 1641
GTAAGTGAGTGCTAGTTTGCTGACT..........TTGACCTATCCTCCTCTTCCCCCAG
6 EXON 6 73697917 73698046 0 1 130
ATTGCAGAACAGCGGTTTGGCATCAACATCCCACACAAGTTCAACGTTCACAATTACAAG
GTGCCCACGTTCTGTGACCACTGTGGCTCCCTGCTCTGGGGGATAATGCGACAAGGACTT
CAGTGTAAAA
INTRON 6 - 7 73698047 73700180 2134
GTAAGGAGCGCTGGCTTCCTCCTTC..........CTGGATTCTCTTCTCTTCCCTCCAG
7 EXON 7 73700181 73700308 1 0 128
TATGTAAGATGAACGTACATATTCGGTGTCAGGCGAACGTGGCCCCAAACTGCGGGGTGA
ATGCCGTGGAGCTTGCCAAGACCCTGGCAGGGATGGGTCTCCAACCCGGAAATATTTCTC
CAACCTCG
INTRON 7 - 8 73700309 73702437 2129
GTGAGCCCTTTGCCTCTGGCTGTGT..........ATTTCTACTTTCCTCCTCCTTGCAG
8 EXON 8 73702438 73702581 0 0 144
AAACTCATTTCCAGGTCGACACTAAGACGGCAGGGAAAGGAGGGCTCCAAAGAAGGAAAT
GGGATCGGTGTTAACTCTTCCAGCAGATTCGGCATCGACAACTTTGAGTTCATCCGGGTG
TTGGGGAAGGGGAGCTTCGGGAAG
INTRON 8 - 9 73702582 73702738 157
GTGAGTCTGGGCTTGGGCCGGCTGG..........CATGCTCCCTCCTGCTTTGCTCTAG
9 EXON 9 73702739 73702912 0 0 174
GTGATGCTTGCCAGGATAAAGGAGACAGGAGAACTGTACGCCGTGAAGGTGCTGAAGAAG
GACGTGATTCTGCAGGATGATGATGTAGAGTGCACCATGACTGAGAAGAGGATCCTGTCC
TTGGCCCGCAACCACCCCTTCCTCACCCAGCTCTTCTGCTGCTTTCAGACTCCA
INTRON 9 - 10 73702913 73721735 18823
GTGAGTATGGCTGGGTACTCCCCAC..........ATCCATTCCCACACGTTTTGTTTAG
10 EXON 10 73721736 73721890 0 2 155
GACCGTCTGTTCTTTGTCATGGAGTTTGTGAACGGAGGCGACCTGATGTTCCACATCCAA
AAGTCCCGTCGTTTCGATGAAGCCCGTGCTCGTTTCTACGCCGCGGAGATCATTTCTGCA
CTCATGTTCCTACATGAGAAAGGTATCATCTATAG
INTRON 10 - 11 73721891 73758885 36995
GTGAGTTTGCATCCCGGGCGCCTCT..........ACATGCTGTACCTGGTTTCTTTCAG
11 EXON 11 73758886 73759024 2 0 139
AGACTTGAAACTGGACAATGTGCTATTGGACCACGAAGGTCACTGTAAACTGGCCGACTT
TGGAATGTGCAAGGAGGGGATTTGTAATGGGGTCACCACAGCCACCTTCTGCGGTACACC
CGACTACATTGCCCCGGAG
INTRON 11 - 12 73759025 73759552 528
GTGAGTGTACCTGCTAGGTGTGGCT..........CTCTCACACCGCCCTCTCTATATAG
12 EXON 12 73759553 73759741 0 0 189
ATCCTTCAGGAGATGCTGTATGGACCTGCAGTAGACTGGTGGGCCATGGGTGTGTTGCTT
TATGAGATGCTGTGCGGACATGCGCCCTTTGAGGCTGAAAATGAAGATGACCTTTTTGAG
GCCATACTGAATGATGAAGTCGTCTACCCCACCTGGCTCCACGAAGATGCCACAGGGATC
CTCAAGTCT
INTRON 12 - 13 73759742 73775389 15648
GTGAGTCTGACCTGCCCAACCCGCT..........CTCTCTCTCTCTTGCACCGTCATAG
13 EXON 13 73775390 73775533 0 0 144
TTCATGACCAAGAACCCCACCATGCGCTTGGGCAGCCTGACTCAGGGAGGAGAGCATGAG
ATCCTGAGACACCCTTTCTTTAAGGAAATCGACTGGGCCCAGTTGAACCATCGCCAGTTA
GAGCCGCCTTTCCGACCTAGAATC
INTRON 13 - 14 73775534 73776911 1378
GTGAGTGCCGCTGTAAAAGATTCTC..........CACAGTTTCCATTTTTCTTTAACAG
14 EXON 14 73776912 73778185 0 - 1274
AAATCCCGAGAAGATGTCAGCAATTTTGACCCAGACTTTATAAAAGAAGAGCCCGTCTTA
ACTCCGATTGATGAGGGACATCTTCCTATGATTAACCAGGATGAGTTTAGAAACTTTTCC
TATGTGTCACCGGAATTGCAACTGTAGCCTTATGGGGAGTCAGAACCAAAGGGGAAGGTG
GATTTCTCCAGGAATTTCTTCTGTGGGAATTCCCTAGCATCCGCCTTAGAACACCAGCTT
CACCTTCATGGAGCAAAATGTTCACAACTCTGCGAAGGGCGGAGCCTCAAGAGAGCTGCT
CTCTCAAGTCCCCAGGAGCCATGGTACATTTCAGTAATTGATACTGAGATAAGATGTTAC
AAAGATGTGCACTGCTCAACCCATGAGTCTCCAGGGCTCTTTCAGGCTTGGAGGAAAGGA
CAGAAGCCAAAGGAAGAGATGCTGGGAAGGATACAGGAGATCCTAGGGATTATAAGCCAA
ACAGGCTTCCTTTTTTTTTTTAACTTCAAGAGACAAATCTACTTTCTGTGGAGCACTCTA
CACTCTTCTTTAAGCCAATATTTCAGTCTGCAAAAGATTAAATGCTGATGAAGAAGTCTC
TCTAGGGAAAAGAACGGCATTCTAAGTAGAAGGATGCGCTTTGAAGAAACTGCAGATGGG
CGTCCTTCAAGCTCCCAACCTAAACCCAGTGTTGAGAGCGGAGGTTGGACACCACGACAA
CCGTCAGTGTCTTGAGTCTCTTCCTCTTCCTTTCAGTAACTAGATATTTATTGAGTGTCA
AATAAAAAGGTGCCATAATCTTCAGTAGCGTACACAGTAGAGTCATGACGCTTTTACACA
TCCTGGGGTCCACCCAATGGTGTTCACGTTTTGGGAAAGTCCTCTCCACATTGCATAGGT
CTGTCTTCTTTGTCTCCTGTTCATAGAAGGGCCACCACCACAGTTGTGCAGTCAGCAGGC
AGGCTTCCGTTGCATGCCACCCGCGGACTGGTGGAAGCGAATCACCCGCACATACTTCAT
CTCGGGCTGACTCATTGGTGAAGAACTCTGCACTGTTCCCATCCATGAACACGTATGTGG
CGGATCCTCCAGTCAGTCTATTTAAGTTATGTTTTCAGAGACAAAGAAGGTTGTTTGATA
TACACATTAATAATTAACAATGGGCCTTGCAAACAAGGCTGACGACAAAGGTGTACCTTT
TCGTGTGTAACCATATATACAGTTGAAAAATTTTATCTGGCTGAAAATAAAGGCATTTTT
GTAGCAAAAGGAAA
3' upstream sequence
TTTTGTGAGAAGAGTGATTTGTCCTCTCCCTGACTCGGAGGATAGGTTTCTAATCAAAGT
AAAAAGCTTTTCACAGTTATTAGAACTCAGGACTGTAGGCAAACTCCTGAGAGAAGGTAC
TGGCAGAACATTTTGTATCCCTGAGGAGGGTGTGGTCAGTCTCATTCATTCATGTCTGCT
CTGAATCAGTGCAGTGACTTCTGGGTATTGCTGTAGCAGGCTGATCCTGGGAATCTTAGT
AGCTCTTCAAAACATCCACTTATCCTTCACATACAGTACATGCCCATGGCCCTCTCTATC
TTCTACCTGTGCCATCAAGAAAGTAGAATTCCTAAGGTCCACAGAGCAAGAAGAAAAGAT
GGAGGAGGTCCTCGTTTGCTTCTTAACCACCTCCTCAGAGGAACATTTGCAACCTCTCTT
GCCATTTGATTGGCCAGATTGGGGCATCCCTAAAGATACCAGTGGCCTAGAGGAATTAGG
AGATAGCTGAGCAGTACCACAGTCTCCATCATCAGTTCTTTTGGGCATTCCAGGGTGAAA
ACGATATTTCTGCATTAATAGGAAAGCTATCGGCCTTCCTGAAGATTTGTCTGGCACAGG
TCAGTAGCTTGTGATGCCATGTCTGGGTAGCAGGCAGGAGTAAATACAGTACATCTTACA
TCCTGCAAGAACTTGAGGTTATTGGTTTGCAAAAGTCTTGATCTTGTTAAGGGGTGGACC
TAGATATACAGCCTGAAGCTTTACATTCTAACCCTGCAGTCTGCTGGGAAAGATTGGAAC
TCTTTCTGACTTGGGGATTCTTGATCATTATGCTTGTTTTAAAATCAGTCGTACAAATTT
CAAGCATATTTACTTATTCAATGCTCCTATGAATTGTGTACTCCCATTTTCATTATACAG
ATGGAGAAACTGGGGCGCAGAGTGTTTTTTTTTTTTTTTAAATAGCTTGTCCACACAAGT
CACACAACAAAAGCATTAGGGCCAAGATAGGACCCAAGTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Prkch (ENSMUSG00000021108)
Transcript ID ENSMUST00000021527
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 684 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information