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Target CDS Information

Gene Symbol (Gene ID) Riok1 (ENSMUSG00000021428)
Cross Reference
CCDS CCDS26461.1
EMBL AC140331, AK014182, AK017312, ...show all
Fantom 3110046C13, 5430416A05, I830082O20
GO GO:0004674, GO:0005524, GO:0005575, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0006464, ...show all
MGI_trans_name Riok1-201
protein_id AAH02158.1, BAB29195.1, BAB30687.2, ...show all
RefSeq_mRNA NM_024242.3
RefSeq_peptide NP_077204
UCSC uc007qdi.2
UniParc UPI0000027025
Uniprot/SWISSPROT Q922Q2
Definition protein_id:ENSMUSP00000021866
translation:
MDCSLDRMASVVPGQFDDADSSDSENKELQPIHAEDGGVLLKSLQNAAAEVKGDAETDEE
DDYDDDDDWYLDDATGKLTKGCTWNGGSNYQANRQTSNYNSAKMSTPIDKSLRKFENKIN
LNKLNVTDSVTNKVTVKLRQKEAESYRIKDKADRATVEQVLDPRTRMILFKLLHKDHISE
IHGCISTGKEANVYYASTPSGESRAIKIYKTSILMFKDRDKYVTGEFRFRRGYCKGNPRK
MVRTWAEKEMRNLCRLKTANIPCPEPIRLRSHVLLMGFIGKDDMPAPLLKNVQLSESKAR
ELYLQVIQYMRKMYQDARLVHADLSEFNMLYHGGDVYIIDVSQSVEHDHPHALEFLRKDC
TNVNDFFSKHAVAVMTVRELFDFVTDPSITADNMDAYLEKAMEIASQRTKEEKTSQDHVD
EEVFKQAYIPRTLNEVKNYERDVDIMMRLKEEDMALNTQQDNILYQTVMGLKKDLSGVQK
VPALLESEVKEETCFGSDDAGGSECSDTVSEEQEDQAGCRNHIADPDIDKKERKKMVKEA
QREKRKNKIPKHVKKRKEKTAKAKKGK

Chromosome 13
Length
Position(start - end)
23403
38037461 - 38060865
Orient to Chromosome plus
Link Location : (13:38037461-38060865)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Riok1 (ENSMUSG00000021428)
Transcript ID ENSMUST00000021866
Reports
substitution
cSNPs5
Insertion29
Deletion26
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num2
synonymous substitutions 38043101 (p.Ile108Ile), 38050908 (p.Arg318Arg), 38057169 (p.Leu433Leu),
non-synonymous substitutions 38040086 (p.Leu29Val), 38057231 (p.Met454Thr),
B6 transcript
(ENSMUST00000021866)
MDCSLDRMASVVPGQFDDADSSDSENKELQPIHAEDGGVLLKSLQNAAAEVKGDAETDEE
DDYDDDDDWYLDDATGKLTKGCTWNGGSNYQANRQTSNYNSAKMSTPIDKSLRKFENKIN
LNKLNVTDSVTNKVTVKLRQKEAESYRIKDKADRATVEQVLDPRTRMILFKLLHKDHISE
IHGCISTGKEANVYYASTPSGESRAIKIYKTSILMFKDRDKYVTGEFRFRRGYCKGNPRK
MVRTWAEKEMRNLCRLKTANIPCPEPIRLRSHVLLMGFIGKDDMPAPLLKNVQLSESKAR
ELYLQVIQYMRKMYQDARLVHADLSEFNMLYHGGDVYIIDVSQSVEHDHPHALEFLRKDC
TNVNDFFSKHAVAVMTVRELFDFVTDPSITADNMDAYLEKAMEIASQRTKEEKTSQDHVD
EEVFKQAYIPRTLNEVKNYERDVDIMMRLKEEDMALNTQQDNILYQTVMGLKKDLSGVQK
VPALLESEVKEETCFGSDDAGGSECSDTVSEEQEDQAGCRNHIADPDIDKKERKKMVKEA
QREKRKNKIPKHVKKRKEKTAKAKKGK*
MSMv4 transcript
MDCSLDRMASVVPGQFDDADSSDSENKEVQPIHAEDGGVLLKSLQNAAAEVKGDAETDEE
DDYDDDDDWYLDDATGKLTKGCTWNGGSNYQANRQTSNYNSAKMSTPIDKSLRKFENKIN
LNKLNVTDSVTNKVTVKLRQKEAESYRIKDKADRATVEQVLDPRTRMILFKLLHKDHISE
IHGCISTGKEANVYYASTPSGESRAIKIYKTSILMFKDRDKYVTGEFRFRRGYCKGNPRK
MVRTWAEKEMRNLCRLKTANIPCPEPIRLRSHVLLMGFIGKDDMPAPLLKNVQLSESKAR
ELYLQVIQYMRKMYQDARLVHADLSEFNMLYHGGDVYIIDVSQSVEHDHPHALEFLRKDC
TNVNDFFSKHAVAVMTVRELFDFVTDPSITADNMDAYLEKAMEIASQRTKEEKTSQDHVD
EEVFKQAYIPRTLNEVKNYERDVDIMMRLKEEDTALNTQQDNILYQTVMGLKKDLSGVQK
VPALLESEVKEETCFGSDDAGGSECSDTVSEEQEDQAGCRNHIADPDIDKKERKKMVKEA
QREKRKNKIPKHVKKRKEKTAKAKKGK*
homology99.65 (568 / 568)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Riok1 (ENSMUSG00000021428)
Transcript ID ENSMUST00000021866
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAGGAAGCTAGGCAGGGCTGCTGGAGGACTCAACCTTGGGCTCACCTTTC
CCGTCCTGCAAATAAACACTACCTGTTCGATGACAGGGATGTGTTAGTGCCTTAAATCAC
TTTCCAAACGCAAAATGTTTCTTTTCCATGGGCCTGTGACTTGCAACTACACTTTAAAAA
ATGTATGTGCCTGTTTAGTATACCCGTGCCATGTGTGTGTAGGATCCTCTGGAACCGGAA
TTATAGTAGTTGTGACTGGCCCAACCAGGTGCTGAACCAAGCCACCACCACCCAGGCTTG
GTTAGCCATTCTACCTAAATCCATTGTTTGTTTGTTTGTTTTTTTTTTTCTTTTCTTTTT
CTTCTTCTTCGAGGAAACAGGGTCTCTCTGTGTAGCCCTTCCTGTCAACAGGTTGGCCTC
AAACTCAAGAGATCCGCCTGCCTCTGCCTCCCAAGGGATGGGATTAAAGGCGTGTGCCAC
CACCGCTCGGCTTGAGTTAAAACCGTTTGAAGATAATGAGGGCTTGTGAGATGGCTGAAC
AGGAAAAAGCGCGGACGACCAGAGTTCGGTTCCCGGAGCCCAAGGTGGAAGGAGTAAGCC
CTCAAGTTATTCTCTGAACTTCACTCACGGAGCACGCATACACACGCGCGCGCTAGATAA
TACTTAACATTTTAACATTTAATAAAGGCAGAAAGAGGTGTCACAAGAGTTCCTGCCAAA
CGCAAAAAAAAACCTTGAACTTCCCAACTTAAAAAAAAAAAAACAACAAAAACCAACCAC
TTGTATCATTGCATCTCAAAACAACGCACCAACGTTTCTAGAGAGCAAAAGTGTGCTCAC
TTCCATGATCCATCGAGCTTCTGTGACTCAGGCTAAGGATTCCGGGTTTCCTCCCGGCAC
ACCGGCTCCGCGGGAGGGAGAACACCTTCCAACCGTCCCCACCGAGGGCACCAACTGGTG
CGTCGCAGGGCGCTCGAACGCCCCAGTGTGACGTCCTCCGGACCGCACCG
1 EXON 1 38036989 38037531 - 2 543
GGGTCCAGAGGAAGAAGGTCAGAGGACGCAAGTCTTCAGGAGCAGCCGGAGGAAAAAAAA
AACAGGCTGACTTCCTATGACCGTAAACGCCATGGTGGAGCAAGAACGAAAGGCTGGGGA
GCAACAAGAGCTACACATCCCACGTTACAAACAACGCACCACGCCCACTTCACATCGCGG
ATTGGTCTTTCCCGGCCACCGTCATGCGCATGCTCCCTGAGGGCACTAGGGTTTGGAGAG
GCCCTGCTGGTGGCATACTTCCGGCGTTGCACTTCCGGCCTGTTGGTGGCCGCGTTTGCC
GAAACCCTGTATCCTGACACCCCGGTGGCGCCTGGTCGTTGCCTTCTTGGGCCTGGCGGT
TGCCGAGGGATTTGAGGGGCGGGAATCGCGGAGACGCGTTTGGATCCTGTAGGTGGGAAG
CAGGCTCTTCCGATCGCGGCCTCAGGGGCGCCGAAGGCTCACACCCCTAGCCATGGACTG
CAGTCTGGACAGGATGGCTTCGGTGGTCCCCGGGCAATTTGACGACGCGGATTCCTCAGA
CAG
INTRON 1 - 2 38037532 38040072 2541
GTAGGCGGCCGGTGGTGACACAGGG..........CATGCCAGAACATTCTTGTTCCTAG
2 EXON 2 38040073 38040274 2 0 202
TGAAAACAAAGAAGTGCAGCCAATCCATGCAGAAGATGGCGGCGTTCTACTTAAAAGCCT
CCAGAATGCTGCAGCAGAGGTGAAGGGCGACGCTGAGACCGATGAGGAAGACGACTATGA
TGATGATGATGATTGGTACTTGGACGATGCAACTGGAAAACTCACCAAGGGTTGTACCTG
GAATGGCGGCAGTAACTATCAG
INTRON 2 - 3 38040275 38043050 2776
GTGTGTAAGGAATTCTGTAAATCTG..........CATATTTTAAACTAATTTCTTGTAG
3 EXON 3 38043051 38043141 0 1 91
GCAAACCGACAGACTTCTAACTACAATTCAGCCAAAATGTCTACTCCAATCGACAAGTCC
TTGCGAAAATTTGAAAATAAAATCAATCTAA
INTRON 3 - 4 38043142 38043908 767
GTAAGTTTTTAAAAATTACATTGCC..........ACATTGTGAGTTTTCGTCTTTTTAG
4 EXON 4 38043909 38043978 1 2 70
ATAAGCTGAATGTTACTGATTCTGTGACAAATAAAGTCACCGTAAAATTGAGACAAAAGG
AAGCAGAATC
INTRON 4 - 5 38043979 38045272 1294
GTAAGTAATGTTTCAGTATAAAGCA..........TGCTATACTTTTTTGTTTCACTCAG
5 EXON 5 38045273 38045315 2 0 43
GTATCGAATTAAAGATAAGGCCGACAGAGCAACCGTAGAACAG
INTRON 5 - 6 38045316 38047244 1929
GTATGCTGGAAGTGCTCACAGTCTT..........TTTTTTTTTTTTTTTTAATTTTTAG
6 EXON 6 38047245 38047337 0 0 93
GTTTTGGATCCCAGAACAAGGATGATTTTATTCAAGTTGTTGCATAAAGACCACATATCA
GAGATACATGGCTGTATTAGCACTGGAAAAGAA
INTRON 6 - 7 38047338 38048879 1542
GTGAGCTGCTTTGGTTGGGATGAGA..........TTTCTTTGTTTATTGCTTAAAATAG
7 EXON 7 38048880 38048992 0 2 113
GCTAATGTATACTATGCTAGCACACCCAGTGGAGAGAGCAGAGCAATCAAAATATACAAA
ACTTCTATTTTGATGTTCAAAGATCGTGATAAGTATGTGACTGGGGAATTCAG
INTRON 7 - 8 38048993 38049075 83
GTGAGCGCAGATTCTTGAGTTCCTT..........ATTAACAAGTGTTTGCTTGCTCCAG
8 EXON 8 38049076 38049156 2 2 81
GTTCCGGCGTGGCTATTGTAAAGGAAACCCTAGGAAAATGGTGAGGACGTGGGCAGAGAA
GGAGATGAGGAATTTGTGCAG
INTRON 8 - 9 38049157 38050223 1067
GTAACTGGTGGTGTGTGAGAGAGGG..........AATTGTCTTTTTTTCTACATCACAG
9 EXON 9 38050224 38050310 2 2 87
GCTAAAAACAGCAAACATACCATGTCCAGAACCAATCAGGCTAAGAAGTCATGTTCTTCT
CATGGGCTTCATTGGCAAGGATGACAT
INTRON 9 - 10 38050311 38050807 497
GTAAGTATGTGGAACGTCAGAGAAT..........TATGTCCACTCCCTTTTCATTTCAG
10 EXON 10 38050808 38050945 2 2 138
GCCAGCCCCACTTTTGAAAAATGTCCAGCTGTCAGAGTCCAAGGCACGGGAGTTGTACCT
GCAGGTCATTCAGTACATGAGGAAAATGTATCAGGACGCTCGACTTGTCCACGCGGATCT
CAGTGAATTCAACATGCT
INTRON 10 - 11 38050946 38052268 1323
GTGAGTGTGCTTTGTTTCCTGGAGC..........AACTCCTGTGCTTATTGCTCTCAAG
11 EXON 11 38052269 38052372 2 1 104
GTACCATGGTGGAGATGTTTACATCATTGATGTTTCTCAGTCTGTGGAGCATGACCACCC
ACATGCATTGGAGTTCTTGAGAAAAGACTGTACCAATGTCAATG
INTRON 11 - 12 38052373 38052877 505
GTGAGTAGAAAGTGGGATTTCCTGA..........TGTCATTTCTGCTTCCTTCTGACAG
12 EXON 12 38052878 38052984 1 0 107
ATTTCTTTTCCAAGCATGCTGTTGCAGTGATGACCGTGCGGGAGCTCTTCGACTTCGTCA
CAGATCCCTCCATCACTGCTGACAACATGGATGCTTACCTGGAAAAG
INTRON 12 - 13 38052985 38056161 3177
GTAAGGCGGGCTGAGGAGAGGACAC..........ATAATTGTTTTGCTTTCTTTCAAAG
13 EXON 13 38056162 38056227 0 0 66
GCTATGGAAATAGCATCCCAGAGGACCAAGGAAGAAAAGACTAGCCAAGATCATGTGGAT
GAAGAG
INTRON 13 - 14 38056228 38057136 909
GTGGGGGTTATTGTGTATTCACAGC..........GTTTGATTTTGCTTTCCTCTTTTAG
14 EXON 14 38057137 38057256 0 0 120
GTGTTCAAACAAGCATATATTCCCAGAACCTTGAACGAAGTAAAGAATTATGAGAGAGAT
GTGGACATCATGATGAGGTTAAAGGAAGAAGACACGGCTTTGAACACTCAGCAAGACAAC
INTRON 14 - 15 38057257 38058687 1431
GTGAGTGGCCTGCTCTGTCTGGAGC..........TATTCGTTTTCCTTTTGTTTTCAAG
15 EXON 15 38058688 38058741 0 0 54
ATTCTATACCAGACTGTCATGGGATTGAAAAAAGATTTGTCAGGAGTCCAGAAG
INTRON 15 - 16 38058742 38059939 1198
GTATGAAAAAAATATGTTGTTATTG..........AGCATTGTTCTATAATAATCTCAAG
16 EXON 16 38059940 38060092 0 0 153
GTCCCCGCGCTCCTAGAAAGTGAAGTTAAGGAAGAGACTTGTTTTGGTTCAGACGATGCT
GGGGGCTCTGAGTGCTCCGACACAGTCTCTGAAGAGCAGGAAGATCAAGCCGGATGCAGA
AACCATATTGCTGACCCTGACATTGATAAAAAG
INTRON 16 - 17 38060093 38060754 662
GTTAGCCAAGATCTTACTCCTGAAT..........GGGGTGGGTTGTTTATATTTTACAG
17 EXON 17 38060755 38061433 0 - 679
GAAAGAAAAAAGATGGTCAAGGAAGCCCAGAGAGAGAAGAGAAAAAATAAAATCCCTAAA
CATGTGAAAAAAAGAAAGGAAAAAACAGCCAAGGCCAAAAAAGGCAAATAGAATGGAGCC
ATTCCTCGGCTACATTTTAACCCTGAAACAGAAGTAGCTGGAGGAGGCTTCCTCACTGTC
TCACTGTCAGAGGAGGCTGGGGTGTGGTCATGTGATTGCTTCAAAAGCCTATTCTTTCGG
GATCCAGTCCTGGCTCTGCTTTTAACGGACTTATTAAGGTATTATTTTAATGAAGAACTT
TGTATATTTTATTTTTATATTTTTATCTTGCAAACATTTTCCCACAAGTATCAGAACATG
AGTGTTTATGATGAACATCCACGGACGAACTTGGGAACATTTGTTTTCTTTGTCTATGCC
AAAGACATATCTGAAACAGCCTGGAGCTCCGCTCCGAGAGACATCGTCTGGCCGTTATGT
GCCATTCCCAGGAGCCCTGTTCCTGTGTGTTCTGGATACACAGGAAGCTGTCCTATGATC
CTGCTTCATCTTAACTATACCTTTCCAGTGAGCCCTCCCAGCTCAGGCGCCATTTCACAC
CCAGCCATTTGTTCATCAGATATTTCAGTGTTCTAGGAACTGGGATATAGCTATGAATAA
AACCACATTACTTCCTTTG
3' upstream sequence
GGTAGTTTGCATTCTTGCTAGGAAATGAAAAATTTTTAAAAAAGTAATAATCTTTGAAGA
GGTTATACATTATATAGAGAGAATCAATGCTGAATAAAGAGAAAACCTAGGGAGGTACAA
GTTGACAACATAAAATATTGGAGGTGAGTCACACCGAACTTCCTGGCACTGTGGTGGCTG
GATGGAAGGAGTCTGCGTTCCAGCCAGACTGGACTACTTAAGCAGATGAGGATACAAGCA
ACAAAGCCAAGGTACATCGGGAAGGAAGAATACCCCAGTCAAAGCACAAAACTACGGGAA
GGCCCTGCAGCAAAAGGCTGTGTGCAGTGGTCAGAAATGGGGTGGCAGCATCAGACTCGG
GGGGAGATCAGAGTGCACAGCTCATGGGGTTTTTAGCGGAGGAGTGTCAGGGTCCAACTT
GTAGTTTGAAAGCATGGTTCTGGCTTCTAGAGAATTGAAGCAAAGGTGGAAGATGATTGG
CTGTGCTTGTTGTTAGCCCTGGTGAAGGATGCTGGTGGCTCGGCCTGGGATACTAGTTGA
TGTGGAGTTAGCTTAAGGCCGCAGGTGAGTTTGAACGGAGTCTTCCAGTTTATAACCCAA
GAAGCCACAGCCCACTGCAGTAACTGTGATGAGACTCGTGGGTGGAGTAAACTTACTGGT
AGGAAAGAGAAAATTACAGGACACACATTGAGAAAAATTACCAGGTGTTAAAGAACCTTT
TCCTATTTTATGTAGCAAATGGCTGTGTTAATCCTTGCACCAGACACTCTTATACAGCAA
CCCAGGGTTTCCGTTTAGACTGCAGCTTCCAGCTGCTTGCTTGATGGCGGGTTATGGTGA
GTGCCACCTGAACTCTGATTGTATGTTGGAACATGCTCCTTTCTGCTTTAAAGTTCAAAA
AGGAGCTTCAGTTTCCATAATATTGAGAGCACAGTTATCATCTTTGTGCACATTTGAGTC
TCTTCCAGGTCTTCTGGTTCACTTAGGCAGCTCTATGTGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Riok1 (ENSMUSG00000021428)
Transcript ID ENSMUST00000021866
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 568 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information