MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Ddx41 (ENSMUSG00000021494)

Cross Reference

CCDS	CCDS26549.1
EMBL	AK156957, BC011308
Fantom	F830109M10
GO	GO:0003677, GO:0004004, GO:0005515, ...show all
goslim_goa	GO:0002376, GO:0003674, GO:0003677, ...show all
MGI_trans_name	Ddx41-201
protein_id	AAH11308.1, BAE33914.1
Reactome	R-MMU-168249, R-MMU-168256, R-MMU-1834941, ...show all
RefSeq_mRNA	NM_134059.2
RefSeq_peptide	NP_598820

UCSC	uc007qro.2
UniParc	UPI00001E8341
Uniprot/SWISSPROT	Q91VN6

Definition

protein_id:ENSMUSP00000021956
translation:

MEDSEPERKRARADEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGATE
EEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESV
AEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPI
KSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI
MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG
MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRT
IFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK
MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE
GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKAC
DESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEA
MQTKQVSNIGRKDYLAHSSMDF

Chromosome

Length
Position(start - end)

5911
55530595 - 55536507

Orient to Chromosome

minus

Link

Location : (13:55530595-55536507)
/

Detail Map

name	Dok3 (ENSMUSG00000035711)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Dok3 note : docking protein 3 [Source:MGI Symbol;Acc:MGI:1351490]

name	Ddx41 (ENSMUSG00000021494)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Ddx41 note : DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Source:MGI Symbol;Acc:MGI:1920185]

name	Dok3 (ENSMUSG00000035711)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000047877

name	Ddx41 (ENSMUSG00000021494)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021956

name	Dok3 (ENSMUSG00000035711) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26548.1 Uniprot/SWISSPROT:Q9QZK7 RefSeq_peptide:NP_038767 RefSeq_mRNA:NM_013739.2 Uniprot/SPTREMBL:Q14AA1 UCSC:uc007qrm.1 EMBL:AF179242 EMBL:AF237580 EMBL:BC116922 EMBL:BC120535 EMBL:CH466546 GO:GO:0005158 GO:GO:0005515 GO:GO:0005515 GO:GO:0005737 GO:GO:0005886 GO:GO:0007265 MGI_trans_name:Dok3-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005886 goslim_goa:GO:0007165 goslim_goa:GO:0008150 protein_id:AAF14285.1 protein_id:AAF61309.1 protein_id:AAI16923.1 protein_id:AAI20536.1 protein_id:EDL41210.1 UniParc:UPI000002A00C
definition	note : transcript_id=ENSMUST00000047877 protein_id : ENSMUSP00000046695 translation : MESVEPPVKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWDVRDGGLGPAGDRSTGPSRRGERRVIRLADCVSVLPADGESCPRDTGAFLITTTERSHLLAAQHRQSWVDPICQLAFPGTGECSSGSGQAESPKRGFVPMEENSIYSSWQEVTEFPVIVQRTEATSRCQLKGPYLLVLGQDDIQLRETSKPQACFSWPYRFLRKYGSDKGVFSFEAGRRCDSGEGLFAFSSPRAPDICGVVAAAIARQRERLPELAMSPPCPLPRALSLPSLEPPGELREVAPGFELPTPRKLPLTDPGPQSLPLLLSPTQEGPASGLYASVCKQTSKHTGTAEHLYENVCMLEASPGLTNGGPEAQEGPPGGRSPLGSPIYHNTEDLSWPGSAQDSNLEAQYRRLLELELDEAGSAGRSGAQAGIKAKLVTLLTRERKKGPAPCDRP

name	Ddx41 (ENSMUSG00000021494) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26549.1 Uniprot/SWISSPROT:Q91VN6 RefSeq_peptide:NP_598820 RefSeq_mRNA:NM_134059.2 UCSC:uc007qro.2 Fantom:F830109M10 EMBL:AK156957 EMBL:BC011308 GO:GO:0003677 GO:GO:0004004 GO:GO:0005515 GO:GO:0005515 GO:GO:0005524 GO:GO:0005634 GO:GO:0005783 GO:GO:0006397 GO:GO:0008270 GO:GO:0008380 GO:GO:0010501 GO:GO:0016020 GO:GO:0016020 GO:GO:0035458 GO:GO:0044822 GO:GO:0044822 GO:GO:0045944 GO:GO:0051607 GO:GO:0071013 GO:GO:0071013 MGI_trans_name:Ddx41-201 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0003723 goslim_goa:GO:0004386 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0006397 goslim_goa:GO:0006950 goslim_goa:GO:0008150 goslim_goa:GO:0016887 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAH11308.1 protein_id:BAE33914.1 Reactome:R-MMU-168249 Reactome:R-MMU-168256 Reactome:R-MMU-1834941 Reactome:R-MMU-1834949 Reactome:R-MMU-3134975 Reactome:R-MMU-3270619 UniParc:UPI00001E8341
definition	note : transcript_id=ENSMUST00000021956 protein_id : ENSMUSP00000021956 translation : MEDSEPERKRARADEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGATEEEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF

name
type	STS
link
xref	UniSTS_NUM:180538 UniSTS:AI324246 WI_MRC-RH:414417
definition	note : map_weight=1 standard_name : AI324246

name
type	misc_feature
link
xref
definition	note : contig CT009762.8 1..175032(-1)

name
type	misc_feature
link
xref
definition	note : contig AC126408.6 35333..238967(1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Ddx41 (ENSMUSG00000021494)
Transcript ID	ENSMUST00000021956

Reports
substitution
cSNPs	2
Insertion	7
Deletion	10
SNPs	+1kb 55537093(c.-586C>T), 55537151(c.-644A>G), 55538376(c.-1869T>C), 55538505(c.-1998G>C), 55538631(c.-2124A>G), 55538725(c.-2218G>T), 55538739(c.-2232C>T), 55538762(c.-2255G>A), 55538874(c.-2367A>G), 55538961(c.-2454T>C), 55539106(c.-2599A>G), 55539169(c.-2662C>T), 55539187(c.-2680T>C), 55539314(c.-2807T>C), 55540043(c.-3536G>A), 55540175(c.-3668T>C), 55540351(c.-3844A>T), 55541129(c.-4622T>C), 55541185(c.-4678A>G), 55541223(c.-4716C>T), 55541272(c.-4765G>A), 55541281(c.-4774G>A), 55541353(c.-4846G>C), 55541363(c.-4856C>T), 5'UTR CDS 55531617(c.1467A>G), 55535416(c.444C>T), 3'UTR INTRON 55530826(c.1733-95A>C), 55530916(c.1733-185T>C), 55531060(c.1732+121T>C), 55531085(c.1732+96G>C), 55531086(c.1732+95G>A), 55531096(c.1732+85T>C), 55531157(c.1732+24G>C), 55531160(c.1732+21A>G), 55531168(c.1732+13T>C), 55531476(c.1550-27G>A), 55531520(c.1549+15T>G), 55532194(c.1231-85T>C), 55532250(c.1230+98C>T), 55532707(c.1099-228T>C), 55532863(c.1098+136T>C), 55533413(c.936-252T>G), 55533500(c.936-339C>T), 55533771(c.935+181C>T), 55533931(c.935+21T>G), 55534528(c.572-40G>A), 55534750(c.572-262A>C), 55534802(c.572-314C>T), 55535055(c.571+234C>T), 55535101(c.571+188A>G), 55535215(c.571+74C>T), 55535233(c.571+56G>A), 55535502(c.434+57T>A), 55536199(c.138+97C>G), 55536418(c.28-12G>T), -1kb 55525470(c.5125G>A), 55525471(c.5124T>C), 55525586(c.5009G>A), 55525592(c.5003C>G), 55525728(c.4867C>T), 55525747(c.4848C>T), 55525803(c.4792G>A), 55525805(c.4790G>A), 55525979(c.4616G>T), 55526396(c.4199A>C), 55526397(c.4198A>C), 55526403(c.4192A>C), 55526428(c.4167G>A), 55526434(c.4161C>T), 55526533(c.4062A>G), 55526541(c.4054G>A), 55526545(c.4050A>G), 55526633(c.3962A>G), 55526743(c.3852T>C), 55526848(c.3747A>G), 55527644(c.2951C>T), 55527680(c.2915A>G), 55527740(c.2855C>T), 55527785(c.2810T>C), 55528173(c.2422A>G), 55528269(c.2326T>C), 55528494(c.2101G>T), 55528856(c.1739A>G), 55528872(c.1723G>T), 55528899(c.1696C>T), 55528911(c.1684G>T), 55529013(c.1582T>C), 55529698(c.897A>G), 55529986(c.609G>A), 55530191(c.404T>C), 55530297(c.298T>C), 55530399(c.*196C>T),
Insertions	+1kb 55536853 (c.-347_-346insGGA), 55537279 (c.-773_-772insAA), 55537683 (c.-1177_-1176insTCT), 55538638 (c.-2132_-2131insTAA), 5'UTR CDS 3'UTR INTRON 55534357 (c.645-42_645-41insTGACCT), -1kb 55528080 (c.2514dupT), 55529842 (c.752_*753insC),
Deletions	+1kb 55537028 (c.-525_-522delCCTC), 55537139 (c.-633delC), 55538225 (c.-1720_-1719delCT), 55538568 (c.-2063_-2062delCT), 55538685 (c.-2182_-2179delGTGT), 55541450 (c.-4947_-4944delGCGC), 5'UTR CDS 3'UTR INTRON 55534356 (c.645-41delT), -1kb 55526379 (c.4213_4215delAAA), 55526562 (c.4030_4032delTAA), 55528437 (c.*2157delC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	0
synonymous substitutions	55531617 (p.Thr489Thr), 55535416 (p.Pro148Pro),
non-synonymous substitutions
B6 transcript (ENSMUST00000021956)	MEDSEPERKRARADEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGATE EEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESV AEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPI KSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRT IFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKAC DESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEA MQTKQVSNIGRKDYLAHSSMDF*
MSMv4 transcript	MEDSEPERKRARADEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGATE EEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESV AEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPI KSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRT IFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKAC DESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEA MQTKQVSNIGRKDYLAHSSMDF*
homology	100.00 (623 / 623)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Ddx41 (ENSMUSG00000021494)
Transcript ID	ENSMUST00000021956


..........CCAGCTAGGTGACTCCTGACTTTCTTTCACATTCCCCACCCCTCCACAAT
TACTCTTCCATTATGAATTCCGGGTGTTTGTTTCTTTACCATGAGTTCTTACTGTGTAGC
CCCAGCTGGCTTCAAACTCAGATCTGCCTGCTGAGTGCTGGGATTAAAGGTGCATGCAAC
CACCTGGCTTTTGGATTTTAATTATTCTTCAAGAGAGGCTACTTGCTATGAATATCACGA
AAATTGATTTGCACTTCCTTTGTGATTTCATGCTAGGTATTGTGATTATACACAATCCCA
GCACTCATGAGGTTGAAGCAGGAGGATCACCACAAGTTTGAAGCCAACCTTGGCTACATG
GCAAGACCCTCTCTTAGGTTAAAAAAAAATCATTTTATTTCTCCCAATCTCAGAACACTT
TGGCACTCCATGGTGATCGATGCACCTATTACAGATAAAGACTTGGGAAGGAGCAGCCAG
CACTAGCTCTGTCTTTCCTCCTTAAAGTAGGACTCCTGACAACCTGGGCCCGTCTCCTTA
CCTCACACCAGCCCCTGAGATCTCTGCAGATGCCCTAAGGAATCTGGTTATTTGCTCTAC
ACTCTCAGCCCCTTTCCTGCTCTCTTGATGGTGACTCCTCCCTCCACTAACTCGAAAACC
CAGATCCAGCATCTCTTCTGTGCTATCTCTAGCTTCCCAGGTGGTCACTCTGAGATGTAT
ATCATTTACACACATAACATACAAGGTTAAAAAAGACCTTGACCATTATTTTACTTCTGA
CCCGTCGGAACAGCGGTGTTATCTCACGTTAATGAATAATATTTTGCGAGCACCGCTTGC
AGGGCTGAAACTCCTGGCCGCCAGAGGGCACAACGCTCCCCGGGAGCGTGCGGGAAAGGA
CAGCGTGCGGAGGGTAGGGCGTGTTCAACAGATTCATCCTTTAACCCACGACTTGGATCT
TCTGCGCATGCTTCAAATCCTCCCGCTACCCACAAGGCTTCGCCAGACCC
AATTGGCTCCGCTGCGCGTCCGTAAACGCGCTGGAAGAAGATTGTCCCGGTTCGCGATCCGGCGCTCACGCCGTTGCTAGGCGACCACAGCAGTTTTTCCTATCTGATTGGAGCTCAGATGCCCTGGCATTGCGCATGTGTGCAGCCTAAGATGGAGGATTCGGAACCGGAGCGGAAG
GTGGGACTGAGGTTTGGTCCACGCG..........CCGCGGCTGACTCTGGTCTCCGCAG
CGGGCACGCGCGGACGAGGCGACCGCGGGTGGGAGCCGCTCCGAGGACGAGGATGAGGACGACGAGGACTACGTACCCTATGTGCCGTTGCGGCAGCGCCGGCAGCTACTG
GTGAGGGGCCGCATCCCTGGTGCAA..........CTGAGGGACACTGCTGGGACCTCAG
CTCCAGAAGCTGCTGCAGCGAAGACGCAAGGGCGCTACGGAGGAAGAGCAGCAGGACAGTGGCAGTGAGCCCCGAGGAGATGAGGACGACATCCCGCTGGGCCCTCAGTCCAATGTCAGCCTCCTGGATCAGCACCAGCACCTCAAAGAGAAGGCTGAAG
GTGGGCCTAGCAGGAAGGAGAGAGG..........TGACCTCTTCGGCTTCTTTTCTCAG
CACGCAAGGAGTCCGCCAAGGAAAAGCAACTGAAGGAAGAAGAAAAGATTCTGGAGAGTGTGGCTGAAGGCCGAG
GTACCATTATAGTTGGTTCAGAGCA..........CATTGAGCCATGTCTGTCTCCTCAG
CCTTGATGTCAGTGAAGGAAATGGCCAAAGGCATCACCTATGACGATCCAATCAAAACTAG
GTATGCCTTTCCAGTAAGTATATGA..........TCTCCTGCCCACCACCTACCCATAG
TTGGACACCTCCGCGTTATGTCCTGAGCATGTCTGAGGAGCGGCATGAGCGAGTTCGGAAGAAGTATCACATCCTGGTGGAGGGCGATGGTATCCCGCCACCCATCAAGAGCTTCAAGGAGATGAAGTTTCCTGCAG
GTACCCGAGGAGAAGGGAGACACCG..........ATTAAACTCCTGTTCTTTACTACAG
CTATCCTTCGGGGCCTGAAAAAAAAGGGCATCCTCCACCCAACACCCATTCAGATCCAGGGCATCCCTACCAT
GTAAGTGTGGGCTGTGAGCATGACT..........TCCTGAAGCTGTCCTCTCCCGACAG
TCTGTCCGGTCGGGACATGATCGGCATTGCCTTCACGGGGTCAGGCAAGACACTGGTATTCACTCTGCCAGTCATCATGTTCTGCCTGGAACAGGAGAAGCGGTTGCCTTTCTCCAAGCGAGAGGGGCCTTATGGGCTCATCATCTGCCCCTCG
GTAAGATAGGCTAATCCTGGGGTCG..........GTACCAGCCTTGTCTCTGCCTGTAG
CGAGAGCTGGCTCGGCAGACCCACGGCATCCTGGAGTATTACTGCCGTCTGCTGCAGGAGGACAGCTCACCCCTCCTGCGCTGTGCCCTCTGCATCGGGGGCATGTCGGTGAAGGAGCAGATGGAGACCATCCGACA
GTACGTACTGATGGTCTCGGGGGCA..........AAACTTAGGGTTTCTTTGTTCTCAG
TGGTGTGCACATGATGGTAGCCACACCTGGACGCCTCATGGATTTGCTGCAGAAGAAAATGGTCAGCCTAGACATCTGCCGCTACCTAGCCCTGGATGAAGCTGACCGCATGATTGACATGGGCTTTGAGGGTGACATTCGTACCATCTTCTCCTACTTCAAG
GTGCCCGACCCCTGCATGTAAATAC..........GGTTGAGAACCACTGCCTTTCTCAG
GGCCAACGGCAGACTCTGCTCTTCAGTGCCACCATGCCGAAGAAGATTCAAAACTTTGCCAAGAGTGCCTTGGTAAAGCCTGTCACCATCAATGTGGGTCGTGCTGGAGCAGCCAGCCTTGATGTCATCCAG
GTAGGCACACACTCCTAATAGACAG..........CCTGACCTGGCCCTTCTGGTGGCAG
GAGGTGGAGTATGTGAAGGAGGAAGCCAAGATGGTGTACTTGCTTGAGTGCCTGCAGAAGACACCCCCACCT
GTGAGTATAGCTGGGCCCAGAGTTC..........AACTGGAGCGGCCTTTTCGGGGCAG
GTGCTCATCTTTGCAGAGAAGAAAGCAGATGTGGATGCCATTCACGAATACCTCCTGCTCAAGGGTGTTGAGGCTGTAGCCATTCATGGGGGCAAAG
GTCAGGATGGTCAACACATTGGCAT..........CTGACACCTACCTGACCCACCCCAG
ACCAGGAAGAGCGGACCAAGGCCATTGAGGCATTCCGGGAAGGCAAGAAGGACGTCTTAGTGGCCACGGATGTGGCCTCTAAAGGCCTGGACTTTCCTGCCATCCAGCATGTCATCAACTATGACATGCCTGAAGAGATAGAAAACTATG
GTAAGGCGCATGGGGATTGGTGGGC..........CCAGAGCCTGTTCCTTTCCTTGCAG
TGCACAGAATTGGCCGCACTGGGCGTTCAGGAAACACAGGCATCGCTACCACCTTCATCAACAAGGCCTGCG
GTGAGGCCCTCCACATAGCTGCCTG..........ATGGTGCTCATTGTCTCTCCCTCAG
ATGAGTCAGTGCTCATGGACCTCAAAGCCTTGTTGCTGGAGGCCAAGCAGAAGGTACCACCTGTTCTGCAAGTGCTGCACTGTGGGGACGAGTCCATGCTGGACATTGGAG
GTGAGTGTTGACCGTGGTCCGTGCT..........TGCTGACCCTTCTCTTCACCCACAG
GAGAACGGGGCTGTGCCTTCTGTGGAGGCCTTGGCCATCGGATCACTGACTGCCCCAAACTTGAAGCTATGCAGACCAAGCAGGTCAGCAACATTGGCCGCAAGGACTACCTGGCCCACAGCTCCATGGACTTCTGAGCCGTCTGACTTCTCTCTTCTCCCCAAGAGTCCAATGCTAGGACACTGGCCATGTGCACACCAGCACTCAAGACAAGAAGCCAGCCTCCCGGCCCAGCTGGCCTGGGCAGCCCCAGTGCCCTCAGAATTACTATTTTTGTTCTCCTCCCCAGCATTAAAGCACAATCCCTTTTCTTGGACCAGTT
CTTCCTCTCTTACCCACCTGCCCCTTGGGTCCTGCACAAGCCTCTGCCTCCAGTACCACC
CTGAGGCAAGACATCTGGAGCTTCCAGAGTTGCCAGCCTCCTATAGAACAGACTTGCTGG
CTGGTGTCCCCATCTGGGCTCAGGGTATCTGGTCAGGAATGCCTTGTAACTTGGGAGTCA
CTGTTAGGGGGTCACAGGGAAATGTTTGTGTCCCTGGTCTCCCTCCTGTCTGACACTGCC
ATCAGCTTTAGTCTTCCTGTAATGGCTGCCCTCCCTGCCTGTGCAAGTTCCCAGCCAGAA
GTCCTCTGCTCTGTCTGCTGAGGAAGTGGCAGATGCCACAGAACTGTCATTCTGGCCACA
GGCACCCTCTAACTCTGTCCTGCCCCATTCTTCCCTGGGCTATAAAGACAAACCAGCCAG
GCTAATGCTGCCACAGCTGGGGAGCCACAGGTAAGATGTGTACATGCAGATGTTGCAAGA
CTGGCTGGCCCACCAACCAGGACGTCATCTTGCAGTAAGAAGGCCAAAGGAAAGGTACAG
CAGGTTGCAGGTGTCTCCTCGTAGCCCTTCTGCACGGGGACTCTGCAAGGCTTGTGCTGA
CTCAGCAAAGGCAGCAGTTGCTCAGGCTGGCTGTCACTCGGTGTGTGGCCTCAGGCAAGT
TACTCAAGTTATCAGCCTTGATTTCCTCATCGCTGAACTGTCAATGAGAAAGGAGGGCAG
AATCAGGCTGTATGAGCTTAGAGCTGCCTGGGCCACAACCACGGTGGGCATGGAGCCAGG
TGCCAAAGGTCTCGTGGATGTATTTCCATGTGTACTGTGTGACACCCCCACCCCCAAACA
GCATTCCTCAGCTGGGTTACAGCATTCTTACCCAAGGTGACATTACACAGGTGACAAGAT
ACTTCCATAATTTGTATTCATGCAAAGCCCCAATACTGGCCTCCAACAAGGCAGGTCAGG
TGGGGTAGGGCAAAGCCACTGGGCAGGAAGCAACCCTTTA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CCAGCTAGGTGACTCCTGACTTTCTTTCACATTCCCCACCCCTCCACAAT TACTCTTCCATTATGAATTCCGGGTGTTTGTTTCTTTACCATGAGTTCTTACTGTGTAGC CCCAGCTGGCTTCAAACTCAGATCTGCCTGCTGAGTGCTGGGATTAAAGGTGCATGCAAC CACCTGGCTTTTGGATTTTAATTATTCTTCAAGAGAGGCTACTTGCTATGAATATCACGA AAATTGATTTGCACTTCCTTTGTGATTTCATGCTAGGTATTGTGATTATACACAATCCCA GCACTCATGAGGTTGAAGCAGGAGGATCACCACAAGTTTGAAGCCAACCTTGGCTACATG GCAAGACCCTCTCTTAGGTTAAAAAAAAATCATTTTATTTCTCCCAATCTCAGAACACTT TGGCACTCCATGGTGATCGATGCACCTATTACAGATAAAGACTTGGGAAGGAGCAGCCAG CACTAGCTCTGTCTTTCCTCCTTAAAGTAGGACTCCTGACAACCTGGGCCCGTCTCCTTA CCTCACACCAGCCCCTGAGATCTCTGCAGATGCCCTAAGGAATCTGGTTATTTGCTCTAC ACTCTCAGCCCCTTTCCTGCTCTCTTGATGGTGACTCCTCCCTCCACTAACTCGAAAACC CAGATCCAGCATCTCTTCTGTGCTATCTCTAGCTTCCCAGGTGGTCACTCTGAGATGTAT ATCATTTACACACATAACATACAAGGTTAAAAAAGACCTTGACCATTATTTTACTTCTGA CCCGTCGGAACAGCGGTGTTATCTCACGTTAATGAATAATATTTTGCGAGCACCGCTTGC AGGGCTGAAACTCCTGGCCGCCAGAGGGCACAACGCTCCCCGGGAGCGTGCGGGAAAGGA CAGCGTGCGGAGGGTAGGGCGTGTTCAACAGATTCATCCTTTAACCCACGACTTGGATCT TCTGCGCATGCTTCAAATCCTCCCGCTACCCACAAGGCTTCGCCAGACCC
1	EXON 1	55536481	55536658	-	0	178	AATTGGCTCCGCTGCGCGTCCGTAAACGCGCTGGAAGAAGATTGTCCCGGTTCGCGATCC GGCGCTCACGCCGTTGCTAGGCGACCACAGCAGTTTTTCCTATCTGATTGGAGCTCAGAT GCCCTGGCATTGCGCATGTGTGCAGCCTAAGATGGAGGATTCGGAACCGGAGCGGAAG
	INTRON 1 - 2	55536407	55536480			74	GTGGGACTGAGGTTTGGTCCACGCG..........CCGCGGCTGACTCTGGTCTCCGCAG
2	EXON 2	55536296	55536406	0	0	111	CGGGCACGCGCGGACGAGGCGACCGCGGGTGGGAGCCGCTCCGAGGACGAGGATGAGGAC GACGAGGACTACGTACCCTATGTGCCGTTGCGGCAGCGCCGGCAGCTACTG
	INTRON 2 - 3	55536046	55536295			250	GTGAGGGGCCGCATCCCTGGTGCAA..........CTGAGGGACACTGCTGGGACCTCAG
3	EXON 3	55535886	55536045	0	1	160	CTCCAGAAGCTGCTGCAGCGAAGACGCAAGGGCGCTACGGAGGAAGAGCAGCAGGACAGT GGCAGTGAGCCCCGAGGAGATGAGGACGACATCCCGCTGGGCCCTCAGTCCAATGTCAGC CTCCTGGATCAGCACCAGCACCTCAAAGAGAAGGCTGAAG
	INTRON 3 - 4	55535805	55535885			81	GTGGGCCTAGCAGGAAGGAGAGAGG..........TGACCTCTTCGGCTTCTTTTCTCAG
4	EXON 4	55535730	55535804	1	1	75	CACGCAAGGAGTCCGCCAAGGAAAAGCAACTGAAGGAAGAAGAAAAGATTCTGGAGAGTG TGGCTGAAGGCCGAG
	INTRON 4 - 5	55535620	55535729			110	GTACCATTATAGTTGGTTCAGAGCA..........CATTGAGCCATGTCTGTCTCCTCAG
5	EXON 5	55535559	55535619	1	2	61	CCTTGATGTCAGTGAAGGAAATGGCCAAAGGCATCACCTATGACGATCCAATCAAAACTA G
	INTRON 5 - 6	55535426	55535558			133	GTATGCCTTTCCAGTAAGTATATGA..........TCTCCTGCCCACCACCTACCCATAG
6	EXON 6	55535289	55535425	2	1	137	TTGGACACCTCCGCGTTATGTCCTGAGCATGTCTGAGGAGCGGCATGAGCGAGTTCGGAA GAAGTATCACATCCTGGTGGAGGGCGATGGTATCCCGCCACCCATCAAGAGCTTCAAGGA GATGAAGTTTCCTGCAG
	INTRON 6 - 7	55534489	55535288			800	GTACCCGAGGAGAAGGGAGACACCG..........ATTAAACTCCTGTTCTTTACTACAG
7	EXON 7	55534416	55534488	1	2	73	CTATCCTTCGGGGCCTGAAAAAAAAGGGCATCCTCCACCCAACACCCATTCAGATCCAGG GCATCCCTACCAT
	INTRON 7 - 8	55534317	55534415			99	GTAAGTGTGGGCTGTGAGCATGACT..........TCCTGAAGCTGTCCTCTCCCGACAG
8	EXON 8	55534163	55534316	2	0	154	TCTGTCCGGTCGGGACATGATCGGCATTGCCTTCACGGGGTCAGGCAAGACACTGGTATT CACTCTGCCAGTCATCATGTTCTGCCTGGAACAGGAGAAGCGGTTGCCTTTCTCCAAGCG AGAGGGGCCTTATGGGCTCATCATCTGCCCCTCG
	INTRON 8 - 9	55534089	55534162			74	GTAAGATAGGCTAATCCTGGGGTCG..........GTACCAGCCTTGTCTCTGCCTGTAG
9	EXON 9	55533952	55534088	0	2	137	CGAGAGCTGGCTCGGCAGACCCACGGCATCCTGGAGTATTACTGCCGTCTGCTGCAGGAG GACAGCTCACCCCTCCTGCGCTGTGCCCTCTGCATCGGGGGCATGTCGGTGAAGGAGCAG ATGGAGACCATCCGACA
	INTRON 9 - 10	55533162	55533951			790	GTACGTACTGATGGTCTCGGGGGCA..........AAACTTAGGGTTTCTTTGTTCTCAG
10	EXON 10	55532999	55533161	2	0	163	TGGTGTGCACATGATGGTAGCCACACCTGGACGCCTCATGGATTTGCTGCAGAAGAAAAT GGTCAGCCTAGACATCTGCCGCTACCTAGCCCTGGATGAAGCTGACCGCATGATTGACAT GGGCTTTGAGGGTGACATTCGTACCATCTTCTCCTACTTCAAG
	INTRON 10 - 11	55532480	55532998			519	GTGCCCGACCCCTGCATGTAAATAC..........GGTTGAGAACCACTGCCTTTCTCAG
11	EXON 11	55532348	55532479	0	0	132	GGCCAACGGCAGACTCTGCTCTTCAGTGCCACCATGCCGAAGAAGATTCAAAACTTTGCC AAGAGTGCCTTGGTAAAGCCTGTCACCATCAATGTGGGTCGTGCTGGAGCAGCCAGCCTT GATGTCATCCAG
	INTRON 11 - 12	55532110	55532347			238	GTAGGCACACACTCCTAATAGACAG..........CCTGACCTGGCCCTTCTGGTGGCAG
12	EXON 12	55532038	55532109	0	0	72	GAGGTGGAGTATGTGAAGGAGGAAGCCAAGATGGTGTACTTGCTTGAGTGCCTGCAGAAG ACACCCCCACCT
	INTRON 12 - 13	55531929	55532037			109	GTGAGTATAGCTGGGCCCAGAGTTC..........AACTGGAGCGGCCTTTTCGGGGCAG
13	EXON 13	55531832	55531928	0	1	97	GTGCTCATCTTTGCAGAGAAGAAAGCAGATGTGGATGCCATTCACGAATACCTCCTGCTC AAGGGTGTTGAGGCTGTAGCCATTCATGGGGGCAAAG
	INTRON 13 - 14	55531685	55531831			147	GTCAGGATGGTCAACACATTGGCAT..........CTGACACCTACCTGACCCACCCCAG
14	EXON 14	55531535	55531684	1	1	150	ACCAGGAAGAGCGGACCAAGGCCATTGAGGCATTCCGGGAAGGCAAGAAGGACGTCTTAG TGGCCACGGATGTGGCCTCTAAAGGCCTGGACTTTCCTGCCATCCAGCATGTCATCAACT ATGACATGCCTGAAGAGATAGAAAACTATG
	INTRON 14 - 15	55531450	55531534			85	GTAAGGCGCATGGGGATTGGTGGGC..........CCAGAGCCTGTTCCTTTCCTTGCAG
15	EXON 15	55531378	55531449	1	1	72	TGCACAGAATTGGCCGCACTGGGCGTTCAGGAAACACAGGCATCGCTACCACCTTCATCA ACAAGGCCTGCG
	INTRON 15 - 16	55531292	55531377			86	GTGAGGCCCTCCACATAGCTGCCTG..........ATGGTGCTCATTGTCTCTCCCTCAG
16	EXON 16	55531181	55531291	1	1	111	ATGAGTCAGTGCTCATGGACCTCAAAGCCTTGTTGCTGGAGGCCAAGCAGAAGGTACCAC CTGTTCTGCAAGTGCTGCACTGTGGGGACGAGTCCATGCTGGACATTGGAG
	INTRON 16 - 17	55530732	55531180			449	GTGAGTGTTGACCGTGGTCCGTGCT..........TGCTGACCCTTCTCTTCACCCACAG
17	EXON 17	55530410	55530731	1	-	322	GAGAACGGGGCTGTGCCTTCTGTGGAGGCCTTGGCCATCGGATCACTGACTGCCCCAAAC TTGAAGCTATGCAGACCAAGCAGGTCAGCAACATTGGCCGCAAGGACTACCTGGCCCACA GCTCCATGGACTTCTGAGCCGTCTGACTTCTCTCTTCTCCCCAAGAGTCCAATGCTAGGA CACTGGCCATGTGCACACCAGCACTCAAGACAAGAAGCCAGCCTCCCGGCCCAGCTGGCC TGGGCAGCCCCAGTGCCCTCAGAATTACTATTTTTGTTCTCCTCCCCAGCATTAAAGCAC AATCCCTTTTCTTGGACCAGTT
	3' upstream sequence						CTTCCTCTCTTACCCACCTGCCCCTTGGGTCCTGCACAAGCCTCTGCCTCCAGTACCACC CTGAGGCAAGACATCTGGAGCTTCCAGAGTTGCCAGCCTCCTATAGAACAGACTTGCTGG CTGGTGTCCCCATCTGGGCTCAGGGTATCTGGTCAGGAATGCCTTGTAACTTGGGAGTCA CTGTTAGGGGGTCACAGGGAAATGTTTGTGTCCCTGGTCTCCCTCCTGTCTGACACTGCC ATCAGCTTTAGTCTTCCTGTAATGGCTGCCCTCCCTGCCTGTGCAAGTTCCCAGCCAGAA GTCCTCTGCTCTGTCTGCTGAGGAAGTGGCAGATGCCACAGAACTGTCATTCTGGCCACA GGCACCCTCTAACTCTGTCCTGCCCCATTCTTCCCTGGGCTATAAAGACAAACCAGCCAG GCTAATGCTGCCACAGCTGGGGAGCCACAGGTAAGATGTGTACATGCAGATGTTGCAAGA CTGGCTGGCCCACCAACCAGGACGTCATCTTGCAGTAAGAAGGCCAAAGGAAAGGTACAG CAGGTTGCAGGTGTCTCCTCGTAGCCCTTCTGCACGGGGACTCTGCAAGGCTTGTGCTGA CTCAGCAAAGGCAGCAGTTGCTCAGGCTGGCTGTCACTCGGTGTGTGGCCTCAGGCAAGT TACTCAAGTTATCAGCCTTGATTTCCTCATCGCTGAACTGTCAATGAGAAAGGAGGGCAG AATCAGGCTGTATGAGCTTAGAGCTGCCTGGGCCACAACCACGGTGGGCATGGAGCCAGG TGCCAAAGGTCTCGTGGATGTATTTCCATGTGTACTGTGTGACACCCCCACCCCCAAACA GCATTCCTCAGCTGGGTTACAGCATTCTTACCCAAGGTGACATTACACAGGTGACAAGAT ACTTCCATAATTTGTATTCATGCAAAGCCCCAATACTGGCCTCCAACAAGGCAGGTCAGG TGGGGTAGGGCAAAGCCACTGGGCAGGAAGCAACCCTTTA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Ddx41 (ENSMUSG00000021494)
Transcript ID	ENSMUST00000021956

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 623 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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