MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

5430421N21Rik (ENSMUSG00000067613)

Cross Reference

CCDS	CCDS49735.1
Clone_based_vega_transcript	AC103674.2-001
EMBL	AC103674
GO	GO:0003674, GO:0005198, GO:0005615, ...show all
goslim_goa	GO:0003674, GO:0005198, GO:0005575, ...show all
MGI_trans_name	5430421N21Rik-001
OTTP	OTTMUSP00000045897
OTTT	OTTMUST00000085039
RefSeq_mRNA	NM_001201323.1
RefSeq_peptide	NP_001188252

UCSC	uc007xtj.2
UniParc	UPI0000429C2F
Uniprot/SPTREMBL	E9Q1Y9
Vega_transcript	AC103674.2-001, OTTMUST00000085039
Vega_translation	217805, OTTMUSP00000045897

Definition

protein_id:ENSMUSP00000023718
translation:

MTCGFRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRS
FGYRSGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFID
KVRFLEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNH
AQESMEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRM
YDEETRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCE
EMKATVIRHGETLRRTREEINELNRMIQRLTAEIENAKCQNTKLEAAVTQSEQQGEAALA
DARCKLAELEGALQKAKQDMACLLKEYQEVMNSKLGLDVEIITYRRLLEGEEQRLCEGVG
AVNVCVSSSRGGVVCGDLCVSGSRPVTGSVCSAPCSGNVAVSTGLCAPCGSGPCHPGRC

Chromosome

Length
Position(start - end)

6064
101485384 - 101491449

Orient to Chromosome

minus

Link

Location : (15:101485384-101491449)
/

Detail Map

name	5430421N21Rik (ENSMUSG00000067613)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : 5430421N21Rik note : RIKEN cDNA 5430421N21 gene [Source:MGI Symbol;Acc:MGI:3690448]

name	5430421N21Rik (ENSMUSG00000067613)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000023718

name	5430421N21Rik (ENSMUSG00000067613) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49735.1 RefSeq_peptide:NP_001188252 RefSeq_mRNA:NM_001201323.1 Vega_transcript:AC103674.2-001 Vega_transcript:OTTMUST00000085039 Uniprot/SPTREMBL:E9Q1Y9 UCSC:uc007xtj.2 Clone_based_vega_transcript:AC103674.2-001 EMBL:AC103674 GO:GO:0003674 GO:GO:0005198 GO:GO:0005615 GO:GO:0007568 GO:GO:0042633 GO:GO:0045095 MGI_trans_name:5430421N21Rik-001 Vega_translation:217805 Vega_translation:OTTMUSP00000045897 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005856 goslim_goa:GO:0007568 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000045897 OTTT:OTTMUST00000085039 UniParc:UPI0000429C2F
definition	note : transcript_id=ENSMUST00000023718 protein_id : ENSMUSP00000023718 translation : MTCGFRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSFGYRSGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRFLEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNHAQESMEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEETRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKATVIRHGETLRRTREEINELNRMIQRLTAEIENAKCQNTKLEAAVTQSEQQGEAALADARCKLAELEGALQKAKQDMACLLKEYQEVMNSKLGLDVEIITYRRLLEGEEQRLCEGVGAVNVCVSSSRGGVVCGDLCVSGSRPVTGSVCSAPCSGNVAVSTGLCAPCGSGPCHPGRC

name
type	STS
link
xref	UniSTS_NUM:180839 UniSTS:AI325212 WI_MRC-RH:415383
definition	note : map_weight=1 standard_name : AI325212

name
type	misc_feature
link
xref
definition	note : contig AC103674.10 33147..142740(1)

name	5430421N21Rik (ENSMUSG00000067613)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000085040 Vega_transcript:OTTMUST00000085040 Clone_based_vega_transcript:AC103674.2-002 MGI_trans_name:5430421N21Rik-002 OTTT:OTTMUST00000085040
definition	note : retained_intron note : transcript_id=ENSMUST00000159029

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	5430421N21Rik (ENSMUSG00000067613)
Transcript ID	ENSMUST00000023718

Reports
substitution
cSNPs	9
Insertion	6
Deletion	7
SNPs	+1kb 101491614(c.-165G>T), 101492021(c.-572G>T), 101492025(c.-576T>G), 101492029(c.-580T>C), 101492030(c.-581C>G), 101492087(c.-638C>G), 101492195(c.-746C>T), 101492357(c.-908A>G), 101492470(c.-1021T>C), 101492477(c.-1028C>G), 101492579(c.-1130A>G), 101492611(c.-1162G>A), 101492943(c.-1494G>A), 101492946(c.-1497C>T), 101493176(c.-1727C>G), 101493258(c.-1809G>A), 101493349(c.-1900C>T), 101493357(c.-1908C>T), 101493369(c.-1920G>A), 101493480(c.-2031G>A), 101493512(c.-2063T>A), 101493815(c.-2366A>G), 101494156(c.-2707G>A), 101494165(c.-2716A>C), 101494218(c.-2769T>G), 101494243(c.-2794G>A), 101494402(c.-2953T>C), 101494524(c.-3075G>T), 101494598(c.-3149A>G), 101494806(c.-3357G>A), 101495015(c.-3566C>A), 101495021(c.-3572A>G), 101495254(c.-3805C>T), 101495361(c.-3912A>G), 101495487(c.-4038C>T), 101495665(c.-4216C>A), 101495777(c.-4328A>G), 101495845(c.-4396G>T), 101495861(c.-4412G>A), 101495995(c.-4546T>G), 101496121(c.-4672C>T), 101496248(c.-4799A>G), 101496293(c.-4844G>A), 101496417(c.-4968T>C), 101496505(c.-5056C>T), 101496509(c.-5060G>A), 5'UTR 101491464(c.-15G>A), 101491465(c.-16T>C), 101491491(c.-42C>T), CDS 101489706(c.450G>A), 101491093(c.357C>T), 101491102(c.348G>A), 101491135(c.315A>G), 101491171(c.279C>T), 101491216(c.234C>A), 101491288(c.162C>T), 101491292(c.158G>A), 101491390(c.60T>C), 3'UTR 101485225(c.159C>T), 101485242(c.142T>C), INTRON 101486170(c.1242-157C>T), 101486267(c.1242-254T>C), 101486273(c.1242-260T>C), 101486279(c.1242-266C>T), 101486340(c.1242-327C>T), 101486359(c.1242-346C>T), 101486633(c.1241+340A>G), 101487608(c.895-13C>A), 101488007(c.730-24A>T), 101488008(c.730-25G>A), 101488469(c.573-37G>A), 101488482(c.573-50G>A), 101488614(c.573-182C>T), 101488714(c.573-282C>T), 101488905(c.573-473A>T), 101489212(c.572+372T>C), 101489416(c.572+168G>T), 101489532(c.572+52G>A), 101489992(c.364-200C>T), 101490021(c.364-229A>G), 101490045(c.364-253C>A), 101490069(c.364-277C>T), 101490102(c.364-310T>C), 101490371(c.364-579C>T), 101490384(c.364-592G>A), 101490424(c.364-632T>A), 101490470(c.363+617G>A), 101490602(c.363+485C>T), 101490649(c.363+438A>G), 101490835(c.363+252A>G), 101490854(c.363+233G>A), 101490875(c.363+212T>C), 101490898(c.363+189A>G), 101490949(c.363+138T>G), 101491073(c.363+14A>G), -1kb 101480415(c.4969C>T), 101480522(c.4862G>T), 101480749(c.4635C>T), 101480755(c.4629C>T), 101480788(c.4596C>A), 101480816(c.4568G>A), 101480828(c.4556G>T), 101481030(c.4354A>C), 101481032(c.4352A>G), 101481052(c.4332G>T), 101481229(c.4155G>A), 101481530(c.3854A>G), 101481552(c.3832G>A), 101481565(c.3819G>A), 101482243(c.3141T>C), 101482295(c.3089A>G), 101482296(c.3088C>T), 101482320(c.3064G>C), 101482610(c.2774T>C), 101482655(c.2729T>C), 101482676(c.2708A>C), 101482695(c.2689G>A), 101483222(c.2162T>C), 101483450(c.1934A>G), 101483529(c.1855G>A), 101483546(c.1838A>C), 101483916(c.1468A>C), 101484051(c.1333A>G), 101484304(c.1080G>A), 101484320(c.1064G>A), 101484539(c.845A>G), 101484866(c.518C>T), 101484955(c.429A>G), 101484966(c.418A>G), 101485117(c.*267G>A),
Insertions	+1kb 101493591 (c.-2143_-2142insA), 101493748 (c.-2300_-2299insCTGA), 5'UTR CDS 3'UTR INTRON 101489004 (c.573-573_573-572insCAAGGGC), 101490803 (c.363+283dupA), -1kb 101480784 (c.4599_4600insT), 101483233 (c.2150_2151insT),
Deletions	+1kb 101492231 (c.-783delA), 5'UTR CDS 3'UTR INTRON 101486261 (c.1242-251_1242-249delCCA), 101486304 (c.1242-293_1242-292delCC), 101490935 (c.363+148_363+151delAAAA), -1kb 101480618 (c.4762_4765delAGAC), 101480925 (c.4457_4458delCA), 101484692 (c.690_691delTG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	8
non-synonymous num	1
synonymous substitutions	101489706 (p.Glu150Glu), 101491093 (p.Ile119Ile), 101491102 (p.Ala116Ala), 101491135 (p.Lys105Lys), 101491171 (p.Ile93Ile), 101491216 (p.Thr78Thr), 101491288 (p.Ser54Ser), 101491390 (p.Pro20Pro),
non-synonymous substitutions	101491292 (p.Arg53His),
B6 transcript (ENSMUST00000023718)	MTCGFRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRS FGYRSGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFID KVRFLEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNH AQESMEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRM YDEETRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCE EMKATVIRHGETLRRTREEINELNRMIQRLTAEIENAKCQNTKLEAAVTQSEQQGEAALA DARCKLAELEGALQKAKQDMACLLKEYQEVMNSKLGLDVEIITYRRLLEGEEQRLCEGVG AVNVCVSSSRGGVVCGDLCVSGSRPVTGSVCSAPCSGNVAVSTGLCAPCGSGPCHPGRC*
MSMv4 transcript	MTCGFRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFHSGSCGRS FGYRSGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFID KVRFLEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNH AQESMEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRM YDEETRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCE EMKATVIRHGETLRRTREEINELNRMIQRLTAEIENAKCQNTKLEAAVTQSEQQGEAALA DARCKLAELEGALQKAKQDMACLLKEYQEVMNSKLGLDVEIITYRRLLEGEEQRLCEGVG AVNVCVSSSRGGVVCGDLCVSGSRPVTGSVCSAPCSGNVAVSTGLCAPCGSGPCHPGRC*
homology	99.79 (480 / 480)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	5430421N21Rik (ENSMUSG00000067613)
Transcript ID	ENSMUST00000023718


..........GAGCTAGACTATAGTATCTGGGCTCTTCTAATTCAGCCCCTCCCTGTCCT
TCTCAAACCCACCTTTAGCTCCTCTCCTGGAGTCTGGAGAGCTTGTTCTCATGGTCCAGA
TCCTATCAGCAATGACCTCTGAAAACTCAAAGCAAATCTGCCTCTGGAGCAGCGGTTCTT
AACCCGTGGGCTGCAACCCCTTAAGGCGCTTATATCAGGTATTTACTTTACAATTCATAA
CTATAGCAGAATTATAGTTATGAAGTAGCAATGAAATGATTTTATGGTGGAGGGGGTCAA
CACAATGTGAGGAGAGGTATGGAAGGGTCGCCGCTTTAGGAAGGTTGAGACCCCCTGACC
TAGATACCCGCTGACCTAGAGACCTGCTGACCTAGAGTCTATGCTGAGTATTCCAGCGTG
CCTTGTCCTACATGCGAGCTTTTCTCCCTGCACTGGGAACCCAGAACACAGAGGCCAAAC
CCTGCTTCCACTGCAGAGTCTTTACCCTCTGACCACTGCCCTCTCTCTCACCCCATCCTG
GACAGGCTCTGTGAAAGAAGGGCCTGAGAAAGGCTGACCTTAACAATGAAGACAGAACCT
CATCTCCCTGCCTTTTAGATAGGGAGAGACAAGGGGAGGGAGGTAGGGACATACTCCCTC
ACAGGATGGGGTAGAACCAGCCACTCTGCCCAAAGCCAGGCCAGATAGCCAGGCTCATAG
CCCAGGTGTGAACCTTCCAGAAATGGGTTCAGAGAGAATGTTCCAAGAAATTCCCTTGCC
CTTCTCTACCAGAGACCAAGGGAGGGGCAGAGACCAGGGCAAGCTTGTAAAGGACTTTGA
AGATGAAACAGGCCTGTAGCCAAAGATTGTTGACACAGCCACACTAGGAGTTGGAGCTTA
AGAGGCCATGCGCTGCCAAGCCAATAAAACACAGCTATTGTCTCTTCTTGGCCCCTTTTA
TATGCCAGCAATTGCTAGCATATAAAAGGGCCTTCAATGACCCAGGGGAC
ACACGGCCTCAGTTCCAAACATTGTCAACTTCTCTCCTCTTCGCGCGCATCTTCTCCTCCACCATGACCTGTGGCTTTCGAACTGGAAACTTCAGCTGCGCCTCAGCCTGCGGGCCCCGGCCCGGCCGCTGCTGCATCTCTGCAGCTCCCTACAGGGGCATCTCCTGCTACCGAGGACTCTCAGGGGGCTTCGGCAGCCAGAGTGTCTGTGGGGCCTTCCACTCTGGCTCCTGTGGACGCAGCTTCGGGTACCGATCTGGAGGCATCTGCGGGCCCAGCCCACCCTGCATCACCACAGTCTCTGTCAATGAGAGCCTGCTCACACCCCTGAACCTGGAGATTGACCCCAATGCTCAGTGTGTGAAGCATGAGGAGAAGGAGCAGATCAAGTGTCTCAACAGCAGGTTCGCAGCCTTCATTGACAAG
GTGGGTGTCCTGGGCCAGCCCCTTC..........CTCAGACGTTAACTCTGCATGGCAG
GTGCGCTTCCTGGAGCAGCAGAACAAGCTGCTGGAGACCAAGTGGCAGTTCTACCAGAACCGCAAGTGCTGTGAGAGCAACATGGAACCTCTGTTCGAGGGCTACATCGAGACGCTGAGGCGGGAGGCTGAGTGTGTGGAGGCCGACAGCGGGAGGCTGGCTGCTGAGCTCAACCATGCGCAGGAGTCCATGGAGGGCTACAAGAAGAG
GTGAGGGCCACTGGGGAGTCTTGAC..........AGGCCTCCTTTCTCTCCTGCCTCAG
GTATGAAGAAGAAGTTGCACTCCGGGCCACAGCAGAGAATGAGTTTGTGGCTCTAAAGAAG
GTGAGTGATTAAAGCTAGTCCCTGC..........CATGCCTCTCTGCAAACCCCAACAG
GATGTGGACTGTGCCTACCTGCGCAAGTCAGATCTGGAGGCCAACGCAGAGGCTCTGACCCAAGAGACCGACTTCCTGAGGAGAATGTATGATGAG
GTAAGGGCAGCAGCCAGGTGGAAGT..........ATCTGCTGTCTCCCTCCTCCTGCAG
GAGACCCGCATCCTCCATTCCCACATCTCAGACACATCTGTCATCGTCAAGATGGACAACAGCCGGGACCTGAACATGGACTGTGTCGTGGCTGAGATCAAGGCTCAGTATGATGACATTGCCAGCCGCAGCCGTGCTGAGGCCGAGTCCTGGTACCGCACCAAG
GTGAGAGGTCAGGACATCTGTCCTT..........GCATCTCTGCTTACCCAACCCCTAG
TGTGAGGAGATGAAGGCCACAGTGATCCGGCATGGAGAGACTCTGCGCCGCACCAGAGAGGAGATCAATGAGCTGAACAGAATGATCCAGAGGCTGACTGCTGAGATCGAGAATGCCAAGTGCCAG
GTATGTAAGGTTCAGCTGCTCTGGG..........ATCTCCACTTCTTTTGTGTTCCCAG
AACACCAAGCTGGAGGCTGCTGTGACCCAATCTGAGCAGCAGGGAGAGGCTGCCCTTGCTGATGCCCGCTGCAAGCTGGCTGAGTTGGAGGGTGCCCTGCAGAAGGCTAAGCAGGACATGGCCTGCCTGCTCAAGGAGTACCAGGAGGTGATGAACTCCAAGCTGGGGCTGGACGTGGAGATCATCACCTACAGGCGCCTGCTGGAGGGCGAGGAGCAGAG
GTGAGTCCTTCCCCCCACTCAACTA..........TTCTCTCTGCCTTTCTTCCACACAG
GCTGTGTGAAGGCGTGGGAGCTGTGAATGTCT
GTAAGTATAATGAACCCTGAAAGGG..........ACTGACCCTGCCTTTGTTCTCACAG
GTGTCAGCAGCTCCCGTGGTGGAGTTGTGTGCGGGGACCTCTGTGTGTCTGGCTCACGGCCTGTGACAGGCAGTGTCTGCAGTGCCCCATGCAGCGGGAATGTGGCAGTAAGCACTGGCCTGTGTGCGCCCTGTGGAAGCGGCCCTTGTCACCCGGGGAGGTGTTAGGAGACAAGAGGGAGCCAGGAAGTGGCCTGGACTACAAGGCTAAGCATGGTAGCTTCAAGGTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCAGCTGCCACTCCATTCAGCTACCTGCTGGCAAGGGGCTCGCTGCTGATAGATCAGTCTCCTGCCTCAGCTGCAGCCCTGGGAATACCCAGTGCTGTTTCCTGTGCCTCTGGCCTCTAGGCCCTGTTGTGCAATAAACTGTGCTGACTCTC
AGAGTTGTGTAAGATGTTGTGCTTTCTTGTGGTGGGTTCATAATGTCACCTAGGGGACAT
TGGCTTGGTGATAGGGCCTGATGACTGGAGCCACTGGGGCCTGTCTTTATGGTAGGTATC
TGCAGGCTCGGCTCCCAAACAGAATTGCCTTCCCATTCTTACCAGGCAGAGCTCAGAGCA
CAGGTTTGCCTATGTCACACCCACTAGACCATGTGACTTTGGGGATGTGACCCAGTGTTG
CCCACCAATTAAAGAGAGATGTGATCCCTGATACCTGTTTTCCCCAAACACACATCCTGT
GTTCACTCCCAGTAGACCCCTCAATCAATCCCTGTGGTTCGTACAGTGAGACAGATAGGC
TTCCTTCCTCCAACTCGCCCTGAAGGAAACCAGAGCCCATAGGCTCTGCTGAAAGGCAGA
GTTGTGTGTGTGTGTGTGGTGTGTCCATCTGTCTGTGTCTGTGTCTGTGTGTGCCTGCTT
GCTTGTCATCTGTCTATCTGTGTGACTGCCTGCCTGCTTGCCTGTTCACCTGCCTGCCGG
CCTGCCTAACAGTCTGTCTACCTGCCTGCCTGTGCCTGTTAATGTCTGGCTGGCTGGCTA
GCTGTGTCTATCTGTGTCTGTCTGCCTGCCTGCCTATTTGTGAATGTCTGGCTGACTCTC
TGAACTGACTGCCTGCCTTCCTGCCTGTCTGCCTGTCTGTCTGCCTATTTGTGAATGTCT
GGCTGGCTCTCTGCCTGCCTATCTATCTGTCTATCTGCCTGTCTGTTTGTCTGTCTGCCT
ACATGTCTGTCTCTGTCTGTTGGCTTGCCTACCTGCCTGTCTGCCTATCCACCTGTCTGT
CTGTCTGCCTGCCAGTCTGTCTTTCTGTCCCTAGCCCTCTTCCATCCACACCCTACTTCC
TTCTCCCACATATATGCTCCTTGCACCCTAACACCACACACACCCCAGGGCCACTTTGTG
TTGCTCTGGACCCCATTCCTCATTGCCATTGCCAGCTCGG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GAGCTAGACTATAGTATCTGGGCTCTTCTAATTCAGCCCCTCCCTGTCCT TCTCAAACCCACCTTTAGCTCCTCTCCTGGAGTCTGGAGAGCTTGTTCTCATGGTCCAGA TCCTATCAGCAATGACCTCTGAAAACTCAAAGCAAATCTGCCTCTGGAGCAGCGGTTCTT AACCCGTGGGCTGCAACCCCTTAAGGCGCTTATATCAGGTATTTACTTTACAATTCATAA CTATAGCAGAATTATAGTTATGAAGTAGCAATGAAATGATTTTATGGTGGAGGGGGTCAA CACAATGTGAGGAGAGGTATGGAAGGGTCGCCGCTTTAGGAAGGTTGAGACCCCCTGACC TAGATACCCGCTGACCTAGAGACCTGCTGACCTAGAGTCTATGCTGAGTATTCCAGCGTG CCTTGTCCTACATGCGAGCTTTTCTCCCTGCACTGGGAACCCAGAACACAGAGGCCAAAC CCTGCTTCCACTGCAGAGTCTTTACCCTCTGACCACTGCCCTCTCTCTCACCCCATCCTG GACAGGCTCTGTGAAAGAAGGGCCTGAGAAAGGCTGACCTTAACAATGAAGACAGAACCT CATCTCCCTGCCTTTTAGATAGGGAGAGACAAGGGGAGGGAGGTAGGGACATACTCCCTC ACAGGATGGGGTAGAACCAGCCACTCTGCCCAAAGCCAGGCCAGATAGCCAGGCTCATAG CCCAGGTGTGAACCTTCCAGAAATGGGTTCAGAGAGAATGTTCCAAGAAATTCCCTTGCC CTTCTCTACCAGAGACCAAGGGAGGGGCAGAGACCAGGGCAAGCTTGTAAAGGACTTTGA AGATGAAACAGGCCTGTAGCCAAAGATTGTTGACACAGCCACACTAGGAGTTGGAGCTTA AGAGGCCATGCGCTGCCAAGCCAATAAAACACAGCTATTGTCTCTTCTTGGCCCCTTTTA TATGCCAGCAATTGCTAGCATATAAAAGGGCCTTCAATGACCCAGGGGAC
1	EXON 1	101491087	101491512	-	0	426	ACACGGCCTCAGTTCCAAACATTGTCAACTTCTCTCCTCTTCGCGCGCATCTTCTCCTCC ACCATGACCTGTGGCTTTCGAACTGGAAACTTCAGCTGCGCCTCAGCCTGCGGGCCCCGG CCCGGCCGCTGCTGCATCTCTGCAGCTCCCTACAGGGGCATCTCCTGCTACCGAGGACTC TCAGGGGGCTTCGGCAGCCAGAGTGTCTGTGGGGCCTTCCACTCTGGCTCCTGTGGACGC AGCTTCGGGTACCGATCTGGAGGCATCTGCGGGCCCAGCCCACCCTGCATCACCACAGTC TCTGTCAATGAGAGCCTGCTCACACCCCTGAACCTGGAGATTGACCCCAATGCTCAGTGT GTGAAGCATGAGGAGAAGGAGCAGATCAAGTGTCTCAACAGCAGGTTCGCAGCCTTCATT GACAAG
	INTRON 1 - 2	101489793	101491086			1294	GTGGGTGTCCTGGGCCAGCCCCTTC..........CTCAGACGTTAACTCTGCATGGCAG
2	EXON 2	101489584	101489792	0	2	209	GTGCGCTTCCTGGAGCAGCAGAACAAGCTGCTGGAGACCAAGTGGCAGTTCTACCAGAAC CGCAAGTGCTGTGAGAGCAACATGGAACCTCTGTTCGAGGGCTACATCGAGACGCTGAGG CGGGAGGCTGAGTGTGTGGAGGCCGACAGCGGGAGGCTGGCTGCTGAGCTCAACCATGCG CAGGAGTCCATGGAGGGCTACAAGAAGAG
	INTRON 2 - 3	101488433	101489583			1151	GTGAGGGCCACTGGGGAGTCTTGAC..........AGGCCTCCTTTCTCTCCTGCCTCAG
3	EXON 3	101488372	101488432	2	0	61	GTATGAAGAAGAAGTTGCACTCCGGGCCACAGCAGAGAATGAGTTTGTGGCTCTAAAGAA G
	INTRON 3 - 4	101488246	101488371			126	GTGAGTGATTAAAGCTAGTCCCTGC..........CATGCCTCTCTGCAAACCCCAACAG
4	EXON 4	101488150	101488245	0	0	96	GATGTGGACTGTGCCTACCTGCGCAAGTCAGATCTGGAGGCCAACGCAGAGGCTCTGACC CAAGAGACCGACTTCCTGAGGAGAATGTATGATGAG
	INTRON 4 - 5	101487984	101488149			166	GTAAGGGCAGCAGCCAGGTGGAAGT..........ATCTGCTGTCTCCCTCCTCCTGCAG
5	EXON 5	101487819	101487983	0	0	165	GAGACCCGCATCCTCCATTCCCACATCTCAGACACATCTGTCATCGTCAAGATGGACAAC AGCCGGGACCTGAACATGGACTGTGTCGTGGCTGAGATCAAGGCTCAGTATGATGACATT GCCAGCCGCAGCCGTGCTGAGGCCGAGTCCTGGTACCGCACCAAG
	INTRON 5 - 6	101487596	101487818			223	GTGAGAGGTCAGGACATCTGTCCTT..........GCATCTCTGCTTACCCAACCCCTAG
6	EXON 6	101487470	101487595	0	0	126	TGTGAGGAGATGAAGGCCACAGTGATCCGGCATGGAGAGACTCTGCGCCGCACCAGAGAG GAGATCAATGAGCTGAACAGAATGATCCAGAGGCTGACTGCTGAGATCGAGAATGCCAAG TGCCAG
	INTRON 6 - 7	101487194	101487469			276	GTATGTAAGGTTCAGCTGCTCTGGG..........ATCTCCACTTCTTTTGTGTTCCCAG
7	EXON 7	101486973	101487193	0	2	221	AACACCAAGCTGGAGGCTGCTGTGACCCAATCTGAGCAGCAGGGAGAGGCTGCCCTTGCT GATGCCCGCTGCAAGCTGGCTGAGTTGGAGGGTGCCCTGCAGAAGGCTAAGCAGGACATG GCCTGCCTGCTCAAGGAGTACCAGGAGGTGATGAACTCCAAGCTGGGGCTGGACGTGGAG ATCATCACCTACAGGCGCCTGCTGGAGGGCGAGGAGCAGAG
	INTRON 7 - 8	101486014	101486972			959	GTGAGTCCTTCCCCCCACTCAACTA..........TTCTCTCTGCCTTTCTTCCACACAG
8	EXON 8	101485982	101486013	2	1	32	GCTGTGTGAAGGCGTGGGAGCTGTGAATGTCT
	INTRON 8 - 9	101485551	101485981			431	GTAAGTATAATGAACCCTGAAAGGG..........ACTGACCCTGCCTTTGTTCTCACAG
9	EXON 9	101485131	101485550	1	-	420	GTGTCAGCAGCTCCCGTGGTGGAGTTGTGTGCGGGGACCTCTGTGTGTCTGGCTCACGGC CTGTGACAGGCAGTGTCTGCAGTGCCCCATGCAGCGGGAATGTGGCAGTAAGCACTGGCC TGTGTGCGCCCTGTGGAAGCGGCCCTTGTCACCCGGGGAGGTGTTAGGAGACAAGAGGGA GCCAGGAAGTGGCCTGGACTACAAGGCTAAGCATGGTAGCTTCAAGGTCTGCTGCCCTTG TGTTCTGAGAATACATTCCCCATCCCCAGCAGCTGCCACTCCATTCAGCTACCTGCTGGC AAGGGGCTCGCTGCTGATAGATCAGTCTCCTGCCTCAGCTGCAGCCCTGGGAATACCCAG TGCTGTTTCCTGTGCCTCTGGCCTCTAGGCCCTGTTGTGCAATAAACTGTGCTGACTCTC
	3' upstream sequence						AGAGTTGTGTAAGATGTTGTGCTTTCTTGTGGTGGGTTCATAATGTCACCTAGGGGACAT TGGCTTGGTGATAGGGCCTGATGACTGGAGCCACTGGGGCCTGTCTTTATGGTAGGTATC TGCAGGCTCGGCTCCCAAACAGAATTGCCTTCCCATTCTTACCAGGCAGAGCTCAGAGCA CAGGTTTGCCTATGTCACACCCACTAGACCATGTGACTTTGGGGATGTGACCCAGTGTTG CCCACCAATTAAAGAGAGATGTGATCCCTGATACCTGTTTTCCCCAAACACACATCCTGT GTTCACTCCCAGTAGACCCCTCAATCAATCCCTGTGGTTCGTACAGTGAGACAGATAGGC TTCCTTCCTCCAACTCGCCCTGAAGGAAACCAGAGCCCATAGGCTCTGCTGAAAGGCAGA GTTGTGTGTGTGTGTGTGGTGTGTCCATCTGTCTGTGTCTGTGTCTGTGTGTGCCTGCTT GCTTGTCATCTGTCTATCTGTGTGACTGCCTGCCTGCTTGCCTGTTCACCTGCCTGCCGG CCTGCCTAACAGTCTGTCTACCTGCCTGCCTGTGCCTGTTAATGTCTGGCTGGCTGGCTA GCTGTGTCTATCTGTGTCTGTCTGCCTGCCTGCCTATTTGTGAATGTCTGGCTGACTCTC TGAACTGACTGCCTGCCTTCCTGCCTGTCTGCCTGTCTGTCTGCCTATTTGTGAATGTCT GGCTGGCTCTCTGCCTGCCTATCTATCTGTCTATCTGCCTGTCTGTTTGTCTGTCTGCCT ACATGTCTGTCTCTGTCTGTTGGCTTGCCTACCTGCCTGTCTGCCTATCCACCTGTCTGT CTGTCTGCCTGCCAGTCTGTCTTTCTGTCCCTAGCCCTCTTCCATCCACACCCTACTTCC TTCTCCCACATATATGCTCCTTGCACCCTAACACCACACACACCCCAGGGCCACTTTGTG TTGCTCTGGACCCCATTCCTCATTGCCATTGCCAGCTCGG..........

Sequence Detail Report

Gene Symbol (Gene ID)	5430421N21Rik (ENSMUSG00000067613)
Transcript ID	ENSMUST00000023718

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 480 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information