MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cox6a2 (ENSMUSG00000030785)

Cross Reference

CCDS	CCDS21891.1
EMBL	AK002506, U08439, U34801, ...show all
Fantom	0610010N10
GO	GO:0004129, GO:0005739, GO:0005751, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Cox6a2-201
protein_id	AAA17835.1, AAB41683.1, AAC52280.1, ...show all
RefSeq_mRNA	NM_009943.2
RefSeq_peptide	NP_034073
UCSC	uc009jyi.1

UniParc	UPI0000003E49
Uniprot/SWISSPROT	P43023

Definition

protein_id:ENSMUSP00000033049
translation:

MALPLKVLSRSMASAAKGDHGGAGANTWRLLTFVLALPGVALCSLNCWMHAGHHERPEFI
PYHHLRIRTKPFAWGDGNHTLFHNPHVNPLPTGYEHP

Chromosome

Length
Position(start - end)

565
128205729 - 128206295

Orient to Chromosome

minus

Link

Location : (7:128205729-128206295)
/

Detail Map

name	Itgad (ENSMUSG00000070369)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Itgad note : integrin, alpha D [Source:MGI Symbol;Acc:MGI:3578624]

name	Cox6a2 (ENSMUSG00000030785)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cox6a2 note : cytochrome c oxidase subunit VIa polypeptide 2 [Source:MGI Symbol;Acc:MGI:104649]

name	Itgad (ENSMUSG00000070369)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000106237

name	Itgad (ENSMUSG00000070369)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000033051

name	Itgad (ENSMUSG00000070369)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000177111

name	Itgad (ENSMUSG00000070369)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000177383

name	Itgad (ENSMUSG00000070369)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000176249

name	Cox6a2 (ENSMUSG00000030785)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000033049

name	Itgad (ENSMUSG00000070369) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q3V0T4 Vega_transcript:Itgad-002 Vega_transcript:OTTMUST00000110160 UCSC:uc009jyd.2 Fantom:4930513K05 EMBL:AK132915 GO:GO:0007229 GO:GO:0008305 GO:GO:0034113 GO:GO:0046872 GO:GO:0050798 MGI_trans_name:Itgad-002 Vega_translation:202691 Vega_translation:OTTMUSP00000061404 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0043167 goslim_goa:GO:0043234 protein_id:BAE21419.1 OTTP:OTTMUSP00000061404 OTTT:OTTMUST00000110160 Reactome:R-MMU-1474244 Reactome:R-MMU-216083 UniParc:UPI00005AB8FA
definition	note : transcript_id=ENSMUST00000106237 protein_id : ENSMUSP00000101844 translation : MVFKTIWIERYRKLINLFRALASCHGSNLDVEKPVVFKEDAASFGQTVVQFGGSRLVVGAPLEAVAVNQTGQLYDCAPATGVCQPILLHIPLEAVNMSLGLSLVADTNNSQLLACGPTAQRACAKNMYAKGSCLLLGSSLQFIQAIPATMPECPGQEMDIAFLIDGSGSIDQSDFTQMKDFVKALMGQLASTSTSFSLMQYSNILKTHFTFTEFKSSLSPQSLVDAIVQLQGLTYTASGIQKVVKELFHSKNGARKSAKKILIVITDGQKFRDPLEYRHVIPEAEKAGIIRYAIGVGDAFREPTALQELNTIGSAPSQDHVFKVGNFVALRSIQRQIQEKIFAIEGTESRSSSSFQHEMSQEGFSSALSMDGPVLGAVGSFSWSGGAFLYPSNMRSTFINMSQENEDMRDAYLGYSTALAFWKGVHSLILGAPRHQHTGKVVIFTQESRHWRPKSEVRGTQIGSYFGASLCSVDMDRDGSTDLVLIGVPHYYEHTRGGQVSVCPMPGVRSRWHCGTTLHGEQGHPWGRFGAALTVLGDVNGDSLADVAIGAPGEEENRGAVYIFHGASRQDIAPSPSQRVTGSQLFLRLQYFGQSLSGGQDLTQDGLVDLAVGAQGHVLLLRSLPLLKVGISIRFAPSEVAKTVYQCWGRTPTVLEAGEATVCLTVRKGSPDLLGDVQSSVRYDLALDPGRLISRAIFDETKNCTLTRRKTLGLGDHCETMKLLLPDCVEDAVTPIILRLNLSLAGDSAPSRNLRPVLAVGSQDHVTASFPFEKNCKQELLCEGNLGVSFNFSGLQVLEVGSSPELTVTVTVWNEGEDSYGTLIKFYYPAELSYRRVTRAQQPHPYPLRLACEAEPTGQESLRSSSCSINHPIFREGAKATFMITFDVSYKAFLGDRLLLRASASSENNKPETSKTAFQLELPVKYTVYTVISRQEDSTKHFNFSSSHGERQKEAEHRYRVNNLSPLTLAISVNFWVPILLNGVAVWDVTLRSPAQGVSCVSQREPPQHSDLLTQIQGRSVLDCAIADCLHLRCDIPSLGTLDELDFILKGNLSFGWISQTLQKKVLLLSEAEITFNTSVYSQLPGQEAFLRAQVSTMLEEYVVYEPVFLMVFSSVGGLLLLALITVALYKLGFFKRQYKEMLDLPSADPDPAGQADSNHETPPHLTS

name	Itgad (ENSMUSG00000070369) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS21890.2 RefSeq_peptide:NP_001025043 RefSeq_mRNA:NM_001029872.3 RefSeq_peptide_predicted:XP_006508034.1 Vega_transcript:Itgad-001 Vega_transcript:OTTMUST00000110161 Uniprot/SPTREMBL:E9PXZ7 UCSC:uc009jyf.2 EMBL:AC124566 GO:GO:0007229 GO:GO:0008305 GO:GO:0034113 GO:GO:0034113 GO:GO:0050798 MGI_trans_name:Itgad-001 Vega_translation:202692 Vega_translation:OTTMUSP00000061405 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0043234 OTTP:OTTMUSP00000061405 OTTT:OTTMUST00000110161 UniParc:UPI00015DF12B
definition	note : transcript_id=ENSMUST00000033051 protein_id : ENSMUSP00000033051 translation : MHCSAMVRGVVILLCGWALASCHGSNLDVEKPVVFKEDAASFGQTVVQFGGSRLVVGAPLEAVAVNQTGQLYDCAPATGVCQPILLHIPLEAVNMSLGLSLVADTNNSQLLACGPTAQRACAKNMYAKGSCLLLGSSLQFIQAIPATMPECPGQEMDIAFLIDGSGSIDQSDFTQMKDFVKALMGQLASTSTSFSLMQYSNILKTHFTFTEFKSSLSPQSLVDAIVQLQGLTYTASGIQKVVDSNRLLLLRVWSALKPGCHYNTHMPWWVWQRVRFSWKELFHSKNGARKSAKKILIVITDGQKFRDPLEYRHVIPEAEKAGIIRYAIGVGDAFREPTALQELNTIGSAPSQDHVFKVGNFVALRSIQRQIQEKIFAIEGTESRSSSSFQHEMSQEGFSSALSMDGPVLGAVGSFSWSGGAFLYPSNMRSTFINMSQENEDMRDAYLGYSTALAFWKGVHSLILGAPRHQHTGKVVIFTQESRHWRPKSEVRGTQIGSYFGASLCSVDMDRDGSTDLVLIGVPHYYEHTRGGQVSVCPMPGVRSRWHCGTTLHGEQGHPWGRFGAALTVLGDVNGDSLADVAIGAPGEEENRGAVYIFHGASRQDIAPSPSQRVTGSQLFLRLQYFGQSLSGGQDLTQDGLVDLAVGAQGHVLLLRSLPLLKVGISIRFAPSEVAKTVYQCWGRTPTVLEAGEATVCLTVRKGSPDLLGDVQSSVRYDLALDPGRLISRAIFDETKNCTLTRRKTLGLGDHCETMKLLLPDCVEDAVTPIILRLNLSLAGDSAPSRNLRPVLAVGSQDHVTASFPFEKNCKQELLCEGNLGVSFNFSGLQVLEVGSSPELTVTVTVWNEGEDSYGTLIKFYYPAELSYRRVTRAQQPHPYPLRLACEAEPTGQESLRSSSCSINHPIFREGAKATFMITFDVSYKAFLGDRLLLRASASSENNKPETSKTAFQLELPVKYTVYTVISRQEDSTKHFNFSSSHGERQKEAEHRYRVNNLSPLTLAISVNFWVPILLNGVAVWDVTLRSPAQGVSCVSQREPPQHSDLLTQIQGRSVLDCAIADCLHLRCDIPSLGTLDELDFILKGNLSFGWISQTLQKKVLLLSEAEITFNTSVYSQLPGQEAFLRAQVSTMLEEYVVYEPVFLMVFSSVGGLLLLALITVALYKLGFFKRQYKEMLDLPSADPDPAGQADSNHETPPHLTS

name	Itgad (ENSMUSG00000070369) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_mRNA_predicted:XM_006507972.2 RefSeq_peptide_predicted:XP_006508035.1 Vega_transcript:Itgad-003 Vega_transcript:OTTMUST00000110162 Uniprot/SPTREMBL:H3BKX8 UCSC:uc009jyf.2 EMBL:AC124566 GO:GO:0007229 GO:GO:0008305 GO:GO:0034113 GO:GO:0050798 MGI_trans_name:Itgad-003 Vega_translation:202693 Vega_translation:OTTMUSP00000061406 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0043234 OTTP:OTTMUSP00000061406 OTTT:OTTMUST00000110162 UniParc:UPI0002467682
definition	note : transcript_id=ENSMUST00000177111 protein_id : ENSMUSP00000135572 translation : MHCSAMVRGVVILLCGWALASCHGSNLDVEKPVVFKEDAASFGQTVVQFGGSRLVVGAPLEAVAVNQTGQLYDCAPATGVCQPILLHIPLEAVNMSLGLSLVADTNNSQLLACGPTAQRACAKNMYAKGSCLLLGSSLQFIQAIPATMPECPGQEMDIAFLIDGSGSIDQSDFTQMKDFVKALMGQLASTSTSFSLMQYSNILKTHFTFTEFKSSLSPQSLVDAIVQLQGLTYTASGIQKVVKELFHSKNGARKSAKKILIVITDGQKFRDPLEYRHVIPEAEKAGIIRYAIGVGDAFREPTALQELNTIGSAPSQDHVFKVGNFVALRSIQRQIQEKIFAIEGTESRSSSSFQHEMSQEGFSSALSMDGPVLGAVGSFSWSGGAFLYPSNMRSTFINMSQENEDMRDAYLGYSTALAFWKGVHSLILGAPRHQHTGKVVIFTQESRHWRPKSEVRGTQIGSYFGASLCSVDMDRDGSTDLVLIGVPHYYEHTRGGQVSVCPMPGVRSRWHCGTTLHGEQGHPWGRFGAALTVLGDVNGDSLADVAIGAPGEEENRGAVYIFHGASRQDIAPSPSQRVTGSQLFLRLQYFGQSLSGGQDLTQDGLVDLAVGAQGHVLLLRSLPLLKVGISIRFAPSEVAKTVYQCWGRTPTVLEAGEATVCLTVRKGSPDLLGDVQSSVRYDLALDPGRLISRAIFDETKNCTLTRRKTLGLGDHCETMKLLLPDCVEDAVTPIILRLNLSLAGDSAPSRNLRPVLAVGSQDHVTASFPFEKNCKQELLCEGNLGVSFNFSGLQVLEVGSSPELTVTVTVWNEGEDSYGTLIKFYYPAELSYRRVTRAQQPHPYPLRLACEAEPTGQESLRSSSCSINHPIFREGAKATFMITFDVSYKAFLGDRLLLRASASSENNKPETSKTAFQLELPVKYTVYTVISRQEDSTKHFNFSSSHGERQKEAEHRYRVNNLSPLTLAISVNFWVPILLNGVAVWDVTLRSPAQGVSCVSQREPPQHSDLLTQIQGRSVLDCAIADCLHLRCDIPSLGTLDELDFILKGNLSFGWISQTLQKKVLLLSEAEITFNTSVYSQLPGQEAFLRAQVSTMLEEYVVYEPVFLMVFSSVGGLLLLALITVALYKLGFFKRQYKEMLDLPSADPDPAGQADSNHETPPHLTS

name	Itgad (ENSMUSG00000070369) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Itgad-004 Vega_transcript:OTTMUST00000110163 Uniprot/SPTREMBL:H3BJS4 EMBL:AC124566 GO:GO:0007229 GO:GO:0016021 GO:GO:0034113 GO:GO:0050798 MGI_trans_name:Itgad-004 Vega_translation:202694 Vega_translation:OTTMUSP00000061407 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0008283 OTTP:OTTMUSP00000061407 OTTT:OTTMUST00000110163 UniParc:UPI00002186AB
definition	note : transcript_id=ENSMUST00000177383 protein_id : ENSMUSP00000135104 translation : DCLHLRCDIPSLGTLDELDFILKGNLSFGWISQVSTMLEEYVVYEPVFLMVFSSVGGLLLLALITVALYKLGFFKRQYKEMLDLPSADPDPAGQADSNHETPPHLTS

name	Itgad (ENSMUSG00000070369) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Itgad-005 Vega_transcript:OTTMUST00000110164 Uniprot/SPTREMBL:H3BKA0 EMBL:AC124566 GO:GO:0034113 GO:GO:0050798 MGI_trans_name:Itgad-005 Vega_translation:202695 Vega_translation:OTTMUSP00000061408 goslim_goa:GO:0002376 goslim_goa:GO:0007155 goslim_goa:GO:0008150 goslim_goa:GO:0008283 OTTP:OTTMUSP00000061408 OTTT:OTTMUST00000110164 UniParc:UPI0002467683
definition	note : transcript_id=ENSMUST00000176249 protein_id : ENSMUSP00000135309 translation : LSEAEITFNTSVYSQLPGQEAFLRAQVSTMLEEYVVYEPVFLMVFSSVGGLLLLALITVALYKVHSNCGPGSDNVLLTGLKRWLSVQEYWLLFWKS

name	Cox6a2 (ENSMUSG00000030785) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS21891.1 Uniprot/SWISSPROT:P43023 RefSeq_peptide:NP_034073 RefSeq_mRNA:NM_009943.2 UCSC:uc009jyi.1 Fantom:0610010N10 EMBL:AK002506 EMBL:U08439 EMBL:U34801 EMBL:U63716 GO:GO:0004129 GO:GO:0005739 GO:GO:0005751 GO:GO:1902600 MGI_trans_name:Cox6a2-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016491 goslim_goa:GO:0022857 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0055085 protein_id:AAA17835.1 protein_id:AAB41683.1 protein_id:AAC52280.1 protein_id:BAB22151.1 UniParc:UPI0000003E49
definition	note : transcript_id=ENSMUST00000033049 protein_id : ENSMUSP00000033049 translation : MALPLKVLSRSMASAAKGDHGGAGANTWRLLTFVLALPGVALCSLNCWMHAGHHERPEFIPYHHLRIRTKPFAWGDGNHTLFHNPHVNPLPTGYEHP

name
type	misc_feature
link
xref
definition	note : contig AC124566.5 1..172872(-1)

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cox6a2 (ENSMUSG00000030785)
Transcript ID	ENSMUST00000033049

Reports
substitution
cSNPs	0
Insertion	4
Deletion	10
SNPs	+1kb 128206530(c.-235T>C), 128206566(c.-271T>C), 128206674(c.-379A>G), 128206680(c.-385G>C), 128206727(c.-432A>G), 128206729(c.-434G>C), 128206749(c.-454A>G), 128206987(c.-692G>A), 128207278(c.-983G>A), 128207790(c.-1495C>T), 128208219(c.-1924G>T), 128208270(c.-1975C>T), 128208527(c.-2232C>T), 128208585(c.-2290A>T), 128208715(c.-2420A>G), 128208764(c.-2469C>A), 128208861(c.-2566A>T), 128208953(c.-2658A>C), 128209281(c.-2986T>A), 128209511(c.-3216A>G), 128210164(c.-3869G>A), 128210165(c.-3870T>C), 128210565(c.-4270A>G), 128210709(c.-4414T>A), 128210892(c.-4597C>T), 128210981(c.-4686G>A), 128210982(c.-4687T>C), 128210983(c.-4688A>G), 128210984(c.-4689C>T), 5'UTR CDS 3'UTR 128205469(c.260T>G), 128205587(c.142C>G), 128205662(c.67C>A), INTRON 128206109(c.74-73A>G), 128206146(c.73+77G>C), 128206193(c.73+30A>C), -1kb 128200628(c.5101A>G), 128200655(c.5074C>T), 128200693(c.5036T>C), 128200699(c.5030C>T), 128201038(c.4691T>G), 128201044(c.4685A>G), 128201248(c.4481A>C), 128201268(c.4461T>G), 128201283(c.4446A>G), 128201322(c.4407A>C), 128201328(c.4401C>T), 128201432(c.4297C>T), 128201446(c.4283T>C), 128201453(c.4276C>A), 128201472(c.4257A>G), 128201794(c.3935G>A), 128201929(c.3800G>A), 128201953(c.3776G>A), 128201994(c.3735T>C), 128202024(c.3705T>G), 128202035(c.3694G>T), 128202037(c.3692C>A), 128202073(c.3656A>G), 128202092(c.3637G>A), 128202094(c.3635A>G), 128202138(c.3591A>T), 128202184(c.3545G>A), 128202197(c.3532C>T), 128202282(c.3447C>T), 128202357(c.3372C>T), 128202375(c.3354A>G), 128202407(c.3322A>T), 128202408(c.3321C>A), 128202464(c.3265C>A), 128203193(c.2536G>A), 128203451(c.2278G>A), 128203652(c.2077G>A), 128203728(c.2001C>T), 128203771(c.1958A>G), 128203791(c.1938A>G), 128204043(c.1686G>A), 128204051(c.1678T>C), 128204091(c.1638C>G), 128204389(c.1340G>A), 128204390(c.1339T>C), 128204408(c.1321C>T), 128204431(c.1298A>C), 128204463(c.1266G>A), 128204493(c.1236C>A), 128204715(c.1014G>C), 128204757(c.972G>T), 128204803(c.926G>A), 128204909(c.820T>C), 128204910(c.819G>A), 128204940(c.789G>A), 128204957(c.772C>G), 128205010(c.719G>A), 128205371(c.*358A>T),
Insertions	+1kb 5'UTR CDS 3'UTR 128205523 (c.202_205dupTTTT), INTRON -1kb 128202713 (c.3015_3016insCTCT), 128204258 (c.1470_1471insGC), 128204441 (c.1286_1287dupAC),
Deletions	+1kb 128208875 (c.-2581delA), 128208998 (c.-2710_-2704delGGTGGGG), 128210245 (c.-3955_-3951delATAAG), 5'UTR CDS 3'UTR INTRON -1kb 128200735 (c.4991_4993delGGA), 128200909 (c.4819delG), 128200979 (c.4749delT), 128200985 (c.4743delT), 128201367 (c.4354_4361delTCTGCTTC), 128201679 (c.4038_4049delCCCCCCCGCCCC), 128204322 (c.1398_*1406delTGCATGTGC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000033049)	MALPLKVLSRSMASAAKGDHGGAGANTWRLLTFVLALPGVALCSLNCWMHAGHHERPEFI PYHHLRIRTKPFAWGDGNHTLFHNPHVNPLPTGYEHP*
MSMv4 transcript	MALPLKVLSRSMASAAKGDHGGAGANTWRLLTFVLALPGVALCSLNCWMHAGHHERPEFI PYHHLRIRTKPFAWGDGNHTLFHNPHVNPLPTGYEHP*
homology	100.00 (98 / 98)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cox6a2 (ENSMUSG00000030785)
Transcript ID	ENSMUST00000033049

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GGCACCTAACTAGTTTTAAGCATATTACTTGTCTACTCTGTGCTAGCTAT TGAGAACAGAATATTAAATGAAGTCATTCCGTGCCACTATGAAAAAATGGTGCATATTTA TTTAGATAGACAGTCCAGAGTTGCCCAGGATAGCTTTAGTACATATTTATTTAGATAGAC AGTCCAGGGCTGGCAAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCC TGAGTTCAAATCTCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGATGC CCTCTTCTGGTGCTAGAAGTCAGCTACAGTGTACTTATGTATAATAATAAATGAAGCTTT GGGCTGGAGCAAGCAGGGACTTAGTGATCAGAGTTGACCAGAGCGAGCAAAGGTCCTAAA AATTCAATCCACAACAACCACATGAAGGCTCACAACCATCTGTAGAGCTACTGTATACTC ACATATATAAAACAAATAAATCTTTAGATAGACAGTCCAGTGTAGCCCAGGATAGCTTTG ACCTTGGTACGTAGTCCAAGATGGCCTTGAACTCCTGACCCTTCTGCCTCCATGTCCCAA GTGCTGGCTGGCATTATAAATAAGTGCGCCACACTGAGATTGTGTAGCAGTAGGGAAAGA ACTCAGGACATTATGGGTACTTGGTAGGCAGACACTCCAGGCGGTCTACCAACTGAGCTA CACTCCCACCCCCACCCCACCCCACTGTAAAATTTGTTTTAAAGACAAGATCTTAGGTAG TTCAAGCTGTGATCAAACTCATTAAGTTGACAACAGTGGCCTTGAACTCTGATCCTCCAG CTTACACATTTCAAGTTTGTATCACTTTAAATCTTCTCTTGCCAAAATAAAAGGCACATT GCATCAGCTGCCTGAAGAGGATCTCCTGCCAGTCAAGACCCACTTTAGATAGAGAAAGCC CCTAAAAATAGCCATCCATGTGCGGGCTCAACAGGTGATTGGCTCTGAGA
1	EXON 1	128206223	128206366	-	1	144	GGGGAGGAGAGCCTCTCGACTGGGTGAAGGAGACAGAGAAGGACAGTGCCATTCCTAGCC TCCCTTTGACAATGGCTCTGCCTCTAAAGGTCCTGAGCCGGAGCATGGCCAGCGCAGCCA AAGGAGACCATGGAGGGGCAGGAG
	INTRON 1 - 2	128206037	128206222			186	GTAAGTGGGGCCAGGCCTGACTCTG..........TCACACCCCACCTTTGCTCCTCCAG
2	EXON 2	128205900	128206036	1	0	137	CCAACACCTGGCGCCTCCTGACCTTTGTGCTGGCTCTTCCCGGCGTAGCCCTCTGCTCCC TTAACTGCTGGATGCACGCTGGCCACCACGAGCGCCCAGAGTTCATCCCGTATCACCACC TCCGCATCCGAACCAAG
	INTRON 2 - 3	128205813	128205899			87	GTACGCCAGAGGATGAGCGAGTGAG..........TGACCTGTCTGCCTTCTCTCTGCAG
3	EXON 3	128205436	128205812	0	-	377	CCCTTCGCCTGGGGGGACGGCAACCACACGCTTTTCCACAATCCCCACGTCAATCCTTTG CCCACCGGTTATGAGCACCCTTGATGTCTCAGCAGACACGCTCTGCCAGCAATCTTCAAA TTGGCCTTCTGCACACCGGCTCTGAGAGCCACTGAGGTTCCAGTGGACAGTTCCAAGCTC AATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGGATGGTGGAAGGGGC TGGGCAGGCTCTTGGGCAGTTGGTATCTGGGTTCCAGTTATTTTTTTTTATATAAGGAAA ATGTGATGTTTCCACCTGCATTTTCATTTTATTTTTTAAAAATGTATACAAGCAATACAT TGAATATTGAGCATATT
	3' upstream sequence						ACTCAGTCTTGTGTTAGTTCTTATCCATATGTAAATTTATGCTGACCCCATTCCTGCTCT TGCATAAAAAGTGGATCAGCACTGAAATCTGACACATGGGCAAACCATAAAAATCTCCCA GCTCAGGAGGTAGGGCATCATTTCTGGGAAGTTTCCCAGGCTAGCCCAGAGCTGAAGAGA ACTTGTTCCCATGCCAGTAGATTCATAGGCAAAAGCAAAACCAATCTCGTAATTGTGGAG ATATACAGGAAAGTAGATTCCTAGGACGTGAGATGTGGAGGAGTCTCATGGTTGGAATCT GCCTGGCCGGCTGGGTCAGGATCTGCAGATGGTAGATCCAGCATCTCTTTATACTGACGT TTGAAGAAGCCAAGCTATAAAATGTAGTAAAGTCAGAAAAACTGGGTAAGAGGGAAGTTG AAGATAAGAGAACTAAAATAACTTCCAGCTGTGTGTCAGGGCAGCCATGTGAATGGCCGT CACGTACAGAGAAAGACCATGTGCCAAGCAGTCGTTACACTCTTAACTGTGGGAGGAAGC CACAGGCTCATTGTCGGGCAGATTTGTACATATGGCATGTCTGCTTCAGTTTAGCCATTC TGTGATATAACTTTCATTGTTATTTCAAAAAGAAGAGATGGAAAAAGACCAAGCAAATGT GATAGGAACAGAATATGTTGCCAAGCCTGCCCTACAACTACGATCTGTGTTCTTACTGTC CTATGGTGTGCACGACAGAACTGGTAGTGAACACTAGTAGTGTTAGGAAAATGATGTGAA AACAATTTACCTTGTACAGCGCCACAGTGATGAGAGCCAGTAACAGCAGACCTCCCACTG AGCTGAACACCATGAGGAAGACGGGCTCATAGACCACGTATTCTTCTAGCATCGTTGACA CCTGATTTGAAAATCAGTGAATGCTCATTCTTCTCACACATGAACACAAACACTCATACA CACAGGCACACAATACACACAAACACACACACACGCACAC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cox6a2 (ENSMUSG00000030785)
Transcript ID	ENSMUST00000033049

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 98 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information