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Target CDS Information

Gene Symbol (Gene ID) Tm2d2 (ENSMUSG00000031556)
Cross Reference
CCDS CCDS22197.1
EMBL AK010545, AK045768, AK083654, ...show all
Fantom 2410018G23, B230310G05, C730006H18, ...show all
GO GO:0003674, GO:0005575, GO:0008150, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Tm2d2-201
protein_id AAH26789.1, BAB27019.1, BAC32484.1, ...show all
RefSeq_mRNA NM_027194.3
RefSeq_peptide NP_081470
UCSC uc009lfn.2
UniParc UPI00000237F4
Uniprot/SWISSPROT Q8R0I4
Definition protein_id:ENSMUSP00000033961
translation:
MVLGGCPVSYLLLCGQAALLLGNLLLLHCVSRSHSFNATAELDLTPSGAAHLEGPAASSW
EYSDPNSPVILCSYLPDEFVDCDAPVDHVGNATASQELGYGCLKFGGQAYSDVQHTAVQC
RALEGIECASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLL
TLGGLGIWWFVDLILLITGGLMPSDGSNWCTVY

Chromosome 8
Length
Position(start - end)
5409
25017369 - 25022779
Orient to Chromosome plus
Link Location : (8:25017369-25022779)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tm2d2 (ENSMUSG00000031556)
Transcript ID ENSMUST00000033961
Reports
substitution
cSNPs0
Insertion2
Deletion16
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000033961)
MVLGGCPVSYLLLCGQAALLLGNLLLLHCVSRSHSFNATAELDLTPSGAAHLEGPAASSW
EYSDPNSPVILCSYLPDEFVDCDAPVDHVGNATASQELGYGCLKFGGQAYSDVQHTAVQC
RALEGIECASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLL
TLGGLGIWWFVDLILLITGGLMPSDGSNWCTVY*
MSMv4 transcript
MVLGGCPVSYLLLCGQAALLLGNLLLLHCVSRSHSFNATAELDLTPSGAAHLEGPAASSW
EYSDPNSPVILCSYLPDEFVDCDAPVDHVGNATASQELGYGCLKFGGQAYSDVQHTAVQC
RALEGIECASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLL
TLGGLGIWWFVDLILLITGGLMPSDGSNWCTVY*
homology100.00 (214 / 214)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tm2d2 (ENSMUSG00000031556)
Transcript ID ENSMUST00000033961
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCGATAATCCCCTGGGTTAAACAGAGCAGAGATTCTTTGTCCAGATTTAG
ATAGATTGAACTACAAGCTCTAGAAACGTAGCGTTTCGTTGATTTTATTATTTTAAGTAT
CCTTACTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGGCCCAAGAAAAACCCGCCC
TCTTCTCCATCGGGATCCCTGTGGACCTACTGCTGAGTCGTCCAAGACGGCGAACGTCAA
ACCCCAAATCCTGATAGACTGAAGCAAAAGTTCCATCTCCCAGCCCAGAGCTAGTGACAG
CCACTCCACCCGCAAAGCACTCGCTGCAGCCCGGGAGTAGCGAGCGCACCGCCACAGTGC
AGCCGGCCGCCGGCCACCGGGCTCCGGGTCAGCGCTGACAGGGGAGCCGGAGCCCAGGGT
CCGCCTCGCAGCCCTCACCACCCAGCACTCACTCCCCACAGCACGGTTCCCGTCCGGCAC
CCACCTGGTCGCCCGGCCTCGAGGACTGGGCCCAGCAAGCCACACGCCAGCAGCCACCTT
AGTCGCAGAGAGGCAAGGGACGAGAGCGCGCGCGGCCCCATAGCGAGGGCTTCGGCAGGT
TCCGCTCAACGCGCGGCCGCCGCCTCCGCCCCTTCGGTCATCCTTGCAACCCCGCGGGGG
CCCCCGGGCTGGCGGGGCGCTCGCCCTCGGCGAGCACGCGCGCGGCACTGACGCAGCAAC
CCCCCCCCCCCCAAAAACCCCGCCCCTTTCCCGATCCCGCGGCCAGAGGCTGACGTAGGG
AAAATACAGTCTGGCCAACCCACCGGCGGCCGCCGCCGCCGCCGCTCCAGTTCGCGCCCG
GCTGTTCCGCCCCTCCGCCCGCGCAGCGGAGACTAGAGAAGGTAGGAGGGGCTGGAGGGC
GGGGCTAAGGGAAGCTCCACCCTCCCTCCGCTCCGTGCAGCAGTGAAGGGTCTACTGGAG
GGCGGAGCGAAGCCAGGCCACACCTTTCCCCTGGCCGTTTCTGATTGGCC
1 EXON 1 25017211 25017592 - 2 382
GTAGTGGCAGGCGGAGCGTCGAGCTGCGCACGGGTTGGCTGTGGAACGGAGGGTTGCGTA
CCCGACGTAGAGAGAGGCCTGACAGCGCCGGGCTCCGGTGGGCCGTGGCGGCCTGGCTTT
GTTTTTAGGCCAGGTCTCTAGGACCGGCCCCCGGGAAGATGGTGCTGGGCGGCTGCCCTG
TGAGTTACCTATTGCTGTGCGGCCAGGCGGCCCTGCTATTGGGGAACCTGCTGCTGCTGC
ACTGTGTTTCTCGGAGCCACTCGTTTAATGCTACGGCCGAACTGGATCTCACACCCTCGG
GCGCCGCTCACCTCGAGGGTCCCGCGGCCTCAAGCTGGGAATACAGCGACCCCAACTCGC
CAGTCATCCTTTGCTCTTACCT
INTRON 1 - 2 25017593 25018065 473
GTAAGCTGCCGGGACGTGGCGGGCG..........GATGAAAAATCTTACTGATTTGCAG
2 EXON 2 25018066 25018153 2 0 88
ACCCGACGAGTTCGTAGACTGTGATGCCCCAGTGGATCACGTTGGAAATGCAACTGCCTC
CCAGGAGCTTGGTTATGGTTGTCTCAAG
INTRON 2 - 3 25018154 25020438 2285
GTGAGGATTTTGTTCTTTGTACAGG..........TATGTTTCTGTTACTTTCTCCACAG
3 EXON 3 25020439 25020554 0 2 116
TTTGGGGGTCAGGCGTACAGTGATGTGCAACACACTGCAGTCCAGTGCAGAGCCCTGGAG
GGAATTGAGTGTGCCAGCCCCAGGACCTTCCTACGAGAAAATAAGCCTTGTATAAA
INTRON 3 - 4 25020555 25022565 2011
GTAAGCGTTCCTTTGTTCTTGAACT..........GTTTCTGTCTCCCTCCCTTCTCCAG
4 EXON 4 25022566 25023259 2 - 694
GTACACTGGACACTACTTCATAACCACGCTTCTCTACTCCTTCTTCCTGGGATGCTTCGG
AGTCGACCGCTTCTGCCTGGGCCACACTGGAACAGCAGTTGGGAAGCTGCTAACACTTGG
AGGACTGGGGATCTGGTGGTTCGTTGATCTTATTCTGCTCATCACTGGGGGGCTGATGCC
TAGTGATGGCAGCAACTGGTGCACTGTCTACTAAGCCCTGCTGCTGTCCTGTGCCGGCAA
GGAAAGCCAGTGCTTGCCTGCCAAGATAATTACTACAAGCTCTGAATTCTCCTCTGAGCA
TCACCATCTTCTCTTGGAGGAAGGACCGACCAAGTTTTTCACCCCAAATCTTAAGCTTGC
AAACTAGAGTGACAAGCAGTATCGTGGAGTCCAGTCGTACCCTTCCTCACATACACAATC
TCAAAGAGCAAAGCTGGTGACTTCTCTCCAGAGACCATCGTCAGTGACGTTTCTGTGTGG
CTGGCTCTTCAGCCGTTGGAGGCAGGGGGACCCACCAGGATAAACCAAGTGAGTGTTTAT
CCATTCACAGCCTTTCGTGACCCTACATTTCCATGCACAGGTCAGAAGCTGCGCCAATGA
GAAGTCTTCAGGCGATGTAGAAATGACTGTGGATTCTAATACACACCGAAATTCTGACTG
AGAATTTAAATTGCAGAATAAAGTTTTAAAGCCT
3' upstream sequence
AGCCTGCTGTGTGAGTATTTCAGTAGAGAATGAGGCTCAAAAAGTGGTTTTGCTGAAGGG
TAAGCACTGGAAATGAAAGAGCTATGGTGTGAATATGAGATGCTCCACCCCCACCCCACA
GTCTCCGGTATGGGGGGCTTGATTGCCAGCTGATGGGCTTTTAGAACGTGAGTGGATCCT
GAGGACTGATCTGATCAGTGGATTATGGTGCTGTTATTGGAAGGTGATAAAGAGTAGGAA
GTGAGGCCTAGTTGGAAGGAGTAGGTTACTGGGGAATGGGGTCACCGTGGGGCTACGACT
TGCCCAGGCTCTTCCTGTCCACTTTGAGATGAAAAGTCTGATCCCCCACACACTTATACC
ATGGTGTTCTGCCCAAGCCATGGAGCCGGCCAACCACAGACTGAGCCTTCTAAACCTGTG
GCCAAAATAAAGCCTGCCTCCTTAAGCCATCTGTGAGGTATTTGGCCATAAGAGTGTGAG
TCTAATACAGCTATCCTACTGAGCCCAACCGGACTGTTGTCATTCTAGAGATGGCAATTT
CCTCTCTCCAATTATGTTTTAAAAGCCAACAATGGTCAATATGTATGGGTTAACAGAGTT
GTCCTAGTCCTTAGTATTTTCCAACTTATGGACCCCACATTTTAGAGGCTGATTCAAAAA
AGACTTCATAAGATGTCATATTCTCCATTAATCCCAGCACTCAGGAGGCAGAGGCAAGTA
GATGTCTTATGAGTTAAAAGCCACCTGGTCTACATAGTTAGACCATGTCTTCAAAAAGGG
GGGGGGGGAGGTTGTACACAAGTAACTATAATACTTCCTGCACAATTAAAATGAGGACCC
TTATGCCCTCGGAAAGAAAACTTAGAAAAATGTATGCCTACTTAAAAGATATTACTAGGG
TTAGATCGGGATGTTTTAGGGGAGTGAGGAGAAAACGCATTCTCTCCACACAGGCCTGAC
AGGAGAAGGTTTTGTAGTGATGGAGACAGCCAAGCGGCTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Tm2d2 (ENSMUSG00000031556)
Transcript ID ENSMUST00000033961
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 214 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information