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Target CDS Information

Gene Symbol (Gene ID) Nr3c2 (ENSMUSG00000031618)
Cross Reference
EMBL AC113941, AC116768, AC118019, ...show all
GO GO:0003700, GO:0003707, GO:0005496, ...show all
goslim_goa GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name Nr3c2-005
OTTP OTTMUSP00000026407
OTTT OTTMUST00000055203
UCSC uc009mhl.1
UniParc UPI00015AA58E
Uniprot/SPTREMBL E9Q8M8
Vega_transcript Nr3c2-005, OTTMUST00000055203
Vega_translation 203998, OTTMUSP00000026407
Definition protein_id:ENSMUSP00000034031
translation:
METKGYHSLPEGLDMERRWSQVSQTLERSSLGPAERTNENSYMEIVNVSCVSGATPNNST
QGSSKEKHELLPCLQQDNSRSGILPSDIKTELESKELSATVAESMGLYMDSVRDAEYTYD
QQNQQGSLSPAKIYQNMEQLVKFYKENGHRSSTLSAISRPLRSFMPDSGTSMNGGALRAI
VKSPIICHEKSPSVCSPLNMPSSVCSPAGINSMSSSTASFGSFPVHSPITQGTSLTCSPS
VENRGSRSHSPVHASNVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSSVSSP
ANLNNSRCSVSSPSNTNNRSTLSSPTASTVGSIGSPISNAFSYTTSGASAGAGAIQDMVP
SPDTHEKGAHDVPFPKTEEVEKAISNGVTGQLNIVQYIKPEPDGAFSSSCLGGNNKINPS
SPFSVPIKQESSKHSCSGASFKGNPTVNPFPFMDGSYFSFMDDKDYYSLSGILGPPVPGF
DSSCEGSAFPGGIKQEPDDGSYFPETSIPSSAIIGVNSGGQSFHYRIGAQGTISLSRSPR
DQSFQHLSSFPPVNALVESWKPHGDLSSRRSDGYPVLEYIPENVSSSTLRSVSTGSSRPS
KICLVCGDEASGCHYGVVTCGSCKVFFKRAVEGKCSRQHNYLCAGRNDCIIDKIRRKNCP
ACRLQKCLQAGMNLGARKSKKLGKLKGLHEEQPQQPPPPPPQSPEEGTTYIAPTKEPSVN
SALVPQLASITRALTPSPSMILENIEPEIVYAGYDNSKPDTAESLLSTLNRLAGKQMIQV
VKWAKVLPGFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKM
HQSAMYELCQGMRQISLQFVRLQLTFEEYSIMKVLLLLSTVPKDGLKSQAAFEEMRTNYI
KELRKMVTKCPNSSGQSWQRFYQLTKLLDSMHDLVNDLLEFCFYTFRESQALKVEFPAML
VEIISDQLPKVESGNAKPLYFHRK

Chromosome 8
Length
Position(start - end)
334257
76908272 - 77242530
Orient to Chromosome plus
Link Location : (8:76908272-77242530)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nr3c2 (ENSMUSG00000031618)
Transcript ID ENSMUST00000034031
Reports
substitution
cSNPs2
Insertion191
Deletion263
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 76908862 (p.Pro197Pro), 77185990 (p.Pro747Pro),
non-synonymous substitutions
B6 transcript
(ENSMUST00000034031)
METKGYHSLPEGLDMERRWSQVSQTLERSSLGPAERTNENSYMEIVNVSCVSGATPNNST
QGSSKEKHELLPCLQQDNSRSGILPSDIKTELESKELSATVAESMGLYMDSVRDAEYTYD
QQNQQGSLSPAKIYQNMEQLVKFYKENGHRSSTLSAISRPLRSFMPDSGTSMNGGALRAI
VKSPIICHEKSPSVCSPLNMPSSVCSPAGINSMSSSTASFGSFPVHSPITQGTSLTCSPS
VENRGSRSHSPVHASNVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSSVSSP
ANLNNSRCSVSSPSNTNNRSTLSSPTASTVGSIGSPISNAFSYTTSGASAGAGAIQDMVP
SPDTHEKGAHDVPFPKTEEVEKAISNGVTGQLNIVQYIKPEPDGAFSSSCLGGNNKINPS
SPFSVPIKQESSKHSCSGASFKGNPTVNPFPFMDGSYFSFMDDKDYYSLSGILGPPVPGF
DSSCEGSAFPGGIKQEPDDGSYFPETSIPSSAIIGVNSGGQSFHYRIGAQGTISLSRSPR
DQSFQHLSSFPPVNALVESWKPHGDLSSRRSDGYPVLEYIPENVSSSTLRSVSTGSSRPS
KICLVCGDEASGCHYGVVTCGSCKVFFKRAVEGKCSRQHNYLCAGRNDCIIDKIRRKNCP
ACRLQKCLQAGMNLGARKSKKLGKLKGLHEEQPQQPPPPPPQSPEEGTTYIAPTKEPSVN
SALVPQLASITRALTPSPSMILENIEPEIVYAGYDNSKPDTAESLLSTLNRLAGKQMIQV
VKWAKVLPGFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKM
HQSAMYELCQGMRQISLQFVRLQLTFEEYSIMKVLLLLSTVPKDGLKSQAAFEEMRTNYI
KELRKMVTKCPNSSGQSWQRFYQLTKLLDSMHDLVNDLLEFCFYTFRESQALKVEFPAML
VEIISDQLPKVESGNAKPLYFHRK*
MSMv4 transcript
METKGYHSLPEGLDMERRWSQVSQTLERSSLGPAERTNENSYMEIVNVSCVSGATPNNST
QGSSKEKHELLPCLQQDNSRSGILPSDIKTELESKELSATVAESMGLYMDSVRDAEYTYD
QQNQQGSLSPAKIYQNMEQLVKFYKENGHRSSTLSAISRPLRSFMPDSGTSMNGGALRAI
VKSPIICHEKSPSVCSPLNMPSSVCSPAGINSMSSSTASFGSFPVHSPITQGTSLTCSPS
VENRGSRSHSPVHASNVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSSVSSP
ANLNNSRCSVSSPSNTNNRSTLSSPTASTVGSIGSPISNAFSYTTSGASAGAGAIQDMVP
SPDTHEKGAHDVPFPKTEEVEKAISNGVTGQLNIVQYIKPEPDGAFSSSCLGGNNKINPS
SPFSVPIKQESSKHSCSGASFKGNPTVNPFPFMDGSYFSFMDDKDYYSLSGILGPPVPGF
DSSCEGSAFPGGIKQEPDDGSYFPETSIPSSAIIGVNSGGQSFHYRIGAQGTISLSRSPR
DQSFQHLSSFPPVNALVESWKPHGDLSSRRSDGYPVLEYIPENVSSSTLRSVSTGSSRPS
KICLVCGDEASGCHYGVVTCGSCKVFFKRAVEGKCSRQHNYLCAGRNDCIIDKIRRKNCP
ACRLQKCLQAGMNLGARKSKKLGKLKGLHEEQPQQPPPPPPQSPEEGTTYIAPTKEPSVN
SALVPQLASITRALTPSPSMILENIEPEIVYAGYDNSKPDTAESLLSTLNRLAGKQMIQV
VKWAKVLPGFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKM
HQSAMYELCQGMRQISLQFVRLQLTFEEYSIMKVLLLLSTVPKDGLKSQAAFEEMRTNYI
KELRKMVTKCPNSSGQSWQRFYQLTKLLDSMHDLVNDLLEFCFYTFRESQALKVEFPAML
VEIISDQLPKVESGNAKPLYFHRK*
homology100.00 (985 / 985)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nr3c2 (ENSMUSG00000031618)
Transcript ID ENSMUST00000034031
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTACTGACTAGAAAGAGCCAAATGCTGCTGACCTATCTGGCAACAGCTCT
GATCCATCCTCCAAGTCAGTTTATATATACTCATACTTTACAGAATTAAATTGACATTAA
ATTCTCATTAATATAAGAAATTATGTATATGTATATATATATATTAAAATATATAAAATT
AAGAAAGTCTAACATTCTTAAAAAACAGTTGTTCAGTGACTTTTCCTATGACTATTCCTT
TGGGAAGCACATATTTGGAAACACAACTTTAATTGCATTTTCATATCATTTATAATAAGG
CCATGTATTTGGTCATGTGGAAGGCAGCATTCATATGATTCAAAGTTCTCAAGACTTTGG
ATCATAAAGTTGGTTGTTAGTTTGTTTTGTTTTTGTATATAACAGAGCTCTATTATGGGT
GAAAGTTTTGAGCAAGGAAGGAACCCAGACTCTTGCATAGAAGTGGAACCCAATCCATCC
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT
ACCTACCTACCTATCTATCCATCCATCAAACTATCTATCTATCCATTTATTTATTTATTT
GGTTTTTGTTATTGTTGTTTTGTCACCATGCTTTTGGCTTTGTCTAGTCACCCATATTCT
CCTTGGACTACCATATTAATTCCTAGGGTTATACTGAACATTATTTAATATTCAAGAAAG
TTACCATTTGTAAATGTTCTTTACAAACTGCCAAGGCCCTATTATAGTGAGTTTTATTGA
GACACAAAATTGCAATTGGTTCTTCTGGATTCTAAAGAAGTTAGAAGTGATATTCTGTTT
GGGTGATATATTATGTCAGTACCCAAGAAGGTATATTTTAATGTAACTGAAGATATTGTT
TATCTTAAGTCAAATATAAATTGTAGATCAAAAGGTACAATTTTAGACTGCCTTAGCATA
ATACTGTTGTTACTGACTCTAACAATTGAATATAAATCTGTTTGTTAGCT
1 EXON 1 76908272 76910028 - 2 1757
ATGGAAACCAAAGGCTACCACAGTCTCCCTGAAGGCCTAGATATGGAAAGGCGCTGGAGT
CAAGTGTCTCAGACCTTGGAGCGTTCTTCTCTTGGACCTGCAGAGAGGACCAATGAGAAC
AGCTACATGGAGATTGTCAACGTCAGCTGCGTTTCCGGTGCTACTCCGAACAACAGTACT
CAAGGGAGCAGCAAAGAAAAACACGAATTACTCCCTTGTCTTCAGCAAGACAATAGTCGG
TCTGGGATTTTGCCATCAGATATTAAAACTGAGCTGGAATCCAAGGAACTTTCAGCCACG
GTGGCTGAGTCCATGGGTTTATACATGGATTCTGTGAGAGATGCCGAGTACACTTATGAT
CAGCAAAACCAACAAGGAAGCCTGAGCCCGGCAAAGATTTATCAAAACATGGAGCAGCTG
GTGAAGTTTTACAAAGAGAATGGTCACAGGTCCTCCACACTGAGTGCTATAAGCAGGCCT
TTGAGGTCATTCATGCCTGACTCTGGGACCTCCATGAATGGTGGGGCCTTGCGTGCCATC
GTTAAGAGCCCAATCATCTGTCATGAGAAGAGCCCCTCTGTTTGCAGCCCTCTCAACATG
CCGTCTTCAGTATGCAGCCCCGCGGGCATCAACTCCATGTCCTCCTCCACAGCTAGCTTT
GGCAGTTTCCCAGTGCACAGTCCCATCACTCAAGGAACCTCACTGACATGCTCCCCCAGT
GTTGAAAATAGAGGCTCAAGGTCACACAGCCCCGTACATGCGAGCAATGTGGGCTCTCCT
CTTTCAAGTCCATTAAGCAGCATGAAATCCCCAATTTCCAGCCCTCCAAGTCACTGCAGT
GTAAAATCTCCAGTATCCAGTCCAAACAATGTCCCTCTGCGCTCCTCTGTGTCAAGCCCG
GCAAATCTTAACAATTCAAGGTGCTCTGTTTCCAGCCCTTCCAACACCAACAATAGATCT
ACACTCTCCAGCCCGACAGCTAGCACAGTGGGGTCCATTGGCAGCCCCATCAGCAATGCC
TTCAGCTATACCACTTCAGGCGCTTCGGCTGGAGCCGGTGCCATCCAGGATATGGTTCCC
AGTCCAGACACCCACGAGAAAGGTGCTCACGACGTTCCTTTCCCTAAGACAGAGGAAGTC
GAGAAGGCCATTTCCAATGGTGTGACTGGTCAGCTCAACATTGTCCAGTACATAAAACCA
GAACCAGATGGGGCTTTCAGCAGTTCCTGCCTAGGAGGAAACAACAAAATCAACCCCAGT
TCTCCGTTCTCTGTACCAATAAAGCAAGAGTCAAGCAAGCACTCATGTTCAGGCGCCTCT
TTTAAAGGGAACCCCACAGTCAACCCATTTCCATTCATGGATGGCTCGTACTTTTCTTTT
ATGGATGATAAAGACTATTATTCCCTATCAGGAATCTTAGGACCACCTGTGCCCGGCTTT
GATAGTAGCTGTGAAGGCAGTGCGTTCCCGGGGGGGATTAAGCAAGAACCAGATGATGGG
AGCTATTTCCCTGAAACCAGCATCCCATCATCTGCCATCATTGGTGTGAATTCAGGTGGA
CAGTCCTTTCACTACCGGATTGGTGCTCAAGGTACAATATCTTTATCACGGTCACCTAGA
GACCAATCTTTCCAACACTTGAGTTCCTTTCCGCCTGTCAATGCATTAGTGGAGTCATGG
AAACCACACGGTGACCTGTCATCTAGGAGAAGTGATGGGTACCCGGTCCTAGAGTACATT
CCAGAAAACGTGTCAAG
INTRON 1 - 2 76910029 77085526 175498
GTAAGTTGATTTGTTTTGTAATCCT..........TTGAAACCTTGATTTCTTTCCCCAG
2 EXON 2 77085527 77085678 2 1 152
CTCTACTTTACGAAGTGTTTCTACTGGATCCTCAAGACCTTCCAAGATCTGCTTGGTGTG
TGGAGATGAGGCTTCTGGGTGTCACTATGGGGTAGTGACCTGCGGCAGCTGCAAAGTCTT
CTTCAAAAGAGCCGTGGAAGGTAAATGTTCAC
INTRON 2 - 3 77085679 77155201 69523
GTGGATGTTCCCTCTACGAATTCCT..........ATTTTTTTTATTATTATTAAATCAG
3 EXON 3 77155202 77155318 1 1 117
GACAACACAACTATCTGTGTGCTGGAAGAAATGACTGCATTATTGATAAGATTCGGAGAA
AGAACTGTCCTGCCTGCAGGCTCCAGAAATGCCTCCAAGCCGGCATGAACTTAGGAG
INTRON 3 - 4 77155319 77185775 30457
GTAAGTGTTGTATGCTTAGCTGATA..........CCTTTCTGATTTTTGCATTTCACAG
4 EXON 4 77185776 77186114 1 1 339
CTCGAAAGTCAAAGAAGCTGGGGAAGTTAAAAGGCCTTCACGAGGAGCAGCCACAGCAGC
CCCCACCGCCACCACCCCAGAGCCCAGAAGAGGGGACCACATACATTGCTCCTACCAAGG
AGCCATCAGTGAACTCTGCGCTGGTCCCGCAGCTCGCCTCGATCACGCGTGCGCTCACGC
CATCCCCGTCCATGATCCTGGAGAACATCGAGCCTGAGATCGTGTATGCAGGCTACGACA
ATTCCAAGCCTGACACCGCCGAGAGCCTGCTCTCCACGCTCAACCGCCTGGCGGGCAAGC
AGATGATCCAAGTCGTGAAGTGGGCCAAGGTACTTCCAG
INTRON 4 - 5 77186115 77187519 1405
GTAGGACCGCGGGCTGCTCAGGCTC..........GGTGATTAATTGTTCTGTTCTCTAG
5 EXON 5 77187520 77187664 1 2 145
GATTTAAAAACTTGCCTCTTGAGGACCAAATTACCCTCATCCAGTATTCTTGGATGTGTC
TATCATCGTTTGCCTTGAGTTGGAGATCGTACAAACATACGAACAGCCAATTTCTCTATT
TTGCACCAGACCTAGTTTTTAATGA
INTRON 5 - 6 77187665 77210643 22979
GTAAGTACCTATTAATTAGCCCTCA..........GTATGTGGCTGCTTTTCCTTTGCAG
6 EXON 6 77210644 77210774 2 1 131
AGAGAAGATGCATCAGTCTGCCATGTATGAGCTGTGCCAGGGGATGCGGCAGATCAGCCT
TCAGTTCGTGCGGCTTCAGCTGACCTTTGAGGAGTACTCCATAATGAAGGTTTTGCTGCT
ACTGAGCACAG
INTRON 6 - 7 77210775 77217427 6653
GTATGCTGATACCCACGCTGGCACT..........TTTATGTTTGTCTTCCTTAACACAG
7 EXON 7 77217428 77217585 1 0 158
TTCCAAAAGATGGCCTCAAGAGCCAGGCTGCGTTTGAGGAGATGAGGACAAATTACATCA
AAGAACTGAGGAAAATGGTCACCAAGTGTCCCAACAGTTCTGGACAGAGTTGGCAGAGGT
TCTACCAACTGACGAAGCTTCTAGACTCCATGCATGAT
INTRON 7 - 8 77217586 77242374 24789
GTAAGTAGAGCCCTTGATCTCCACG..........TACCCACTGTGTCTGTGTGTTGCAG
8 EXON 8 77242375 77242530 0 - 156
TTGGTGAATGACCTGCTAGAATTCTGCTTCTATACCTTCCGAGAATCCCAGGCTCTGAAG
GTGGAGTTTCCCGCCATGCTGGTGGAGATCATCAGCGACCAGCTGCCAAAGGTGGAATCC
GGGAACGCCAAGCCCCTTTACTTTCACAGGAAGTGA
3' upstream sequence
TGGAAAATGCCGGCCAGGAAGAACTTTGCCTTAAGTTTCCCCACGTTGTTCTACAACTAC
GAAAGACCCAAGAAATCACATTTTTAACATGTGACGGCGGATTGACAGTTGGTCGGCAGT
TTCTCAAGTTTAAAATCCCATCGAGGGTGTGGAGTCGGGAAAGCCAGGAGACCTGGATCA
GGCAAGCCTGAGCTGATTAAAGGACTCTTCCCTCTCCACTCCCAGTGCTTAGAAAACATG
TTCCCGTTCCTCTGGATGAAAAGCCATATCTAGTCAATAACTCTGATTTTGATATTTTAA
CAGATGGAAGTTTTAACTATGCCATGTGGTTTCTGGTATCTCTCGCTTGTTTTCAAAGGG
TTCAAAGGACTAGAGAACTTTTTAAAGCTTACCCTTGGTTTGCACATAAAATGTCTAGTC
AATATAGGGCATTAATATTCTTTTGTTATTTAAAAACACACAAAAAGCATACACAAAAAT
ACATACAGATTCCTGGTATGTAATAAACAGAACACGTGGCGTGGAACTGTGGCCTTCCAG
GCACGTTTTTCTGCATCGCTGGCATACACACTCGTTAGTGTCCATTTATTATTTAATTAG
AATGGATAAGATGTTAAATGCCTTGGTTTCAATTTCTAGTATCTATTGTGTTGGCTTTAC
AAATAATTTTTTGCAGTCTTTTGCTGTGCTGTACATTACTGTATGTATAAATCGTGAAGG
ACCTGAAATAAGGTGTAAGGAACTTTTGTAAATGAGACACAAAAAAAAATCTTTAATGGT
TAATAGGATGAATGGGAAAGTATTTTTGAAAGAATTCTATTTTGCTGGAGACTATTTAAG
TACTATCTTTGTCTAAACAAGGTAACTTTTTTTTGTAAGTGAGATGCCCTGCATGCGTAC
TGAACCGTTTACAGTGTATTTAAGAAAGGGAAAGCTGTGCCTTTTTTTAGCTTCATATCT
AATTTACCATTTTACAGTCTCTGTTGTAAATAACCACACT..........

Sequence Detail Report

Gene Symbol (Gene ID) Nr3c2 (ENSMUSG00000031618)
Transcript ID ENSMUST00000034031
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 985 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information