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Target CDS Information

Gene Symbol (Gene ID) Olfm2 (ENSMUSG00000032172)
Cross Reference
CCDS CCDS40546.1
EMBL AK037199, BC115981, BC117536, ...show all
Fantom A030009A06
GO GO:0005515, GO:0005576, GO:0005576, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Olfm2-201
protein_id AAI15982.1, AAI17537.1, BAC29750.1, ...show all
RefSeq_mRNA NM_173777.3
RefSeq_peptide NP_776138
RefSeq_peptide_predicted XP_006510356.1, XP_006510357.1, XP_006510358.1
UCSC uc009oje.1
UniParc UPI00001C4371
Uniprot/SWISSPROT Q8BM13
Definition protein_id:ENSMUSP00000034692
translation:
MRKLRQTGTTIAGGQTLFQSPEEGWQLYTSAQAPDGKCVCTAVIPAQSTCARDGRSRELR
QLMEKVQNVSQSMEVLELRTFRDLQYVRSMETLMRSLDARLRAADGSVSAKSFQELKDRM
TELLPLSSVLEQYKADTRTIVRLREEVRNLSGNLAAIQEEMGAYGYEDLQQRVMALEARL
HACAQKLGCGKLTGVSNPITIRAMGSRFGSWMTDTMAPSADSRVWYMDGYYKGRRVLEFR
TLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPG
AGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVVRSWDTGYP
KRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRE
RALYTWNNGHQVLYNVTLFHVISTAGDP

Chromosome 9
Length
Position(start - end)
60049
20668107 - 20728157
Orient to Chromosome minus
Link Location : (9:20668107-20728157)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Olfm2 (ENSMUSG00000032172)
Transcript ID ENSMUST00000034692
Reports
substitution
cSNPs8
Insertion40
Deletion57
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num8
non-synonymous num0
synonymous substitutions 20671766 (p.Ile201Ile), 20672295 (p.Lys134Lys), 20672663 (p.Arg102Arg), 20672686 (p.Arg95Arg), 20672759 (p.Ser70Ser), 20675598 (p.Arg57Arg), 20675685 (p.Tyr28Tyr), 20675688 (p.Leu27Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000034692)
MRKLRQTGTTIAGGQTLFQSPEEGWQLYTSAQAPDGKCVCTAVIPAQSTCARDGRSRELR
QLMEKVQNVSQSMEVLELRTFRDLQYVRSMETLMRSLDARLRAADGSVSAKSFQELKDRM
TELLPLSSVLEQYKADTRTIVRLREEVRNLSGNLAAIQEEMGAYGYEDLQQRVMALEARL
HACAQKLGCGKLTGVSNPITIRAMGSRFGSWMTDTMAPSADSRVWYMDGYYKGRRVLEFR
TLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPG
AGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVVRSWDTGYP
KRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRE
RALYTWNNGHQVLYNVTLFHVISTAGDP*
MSMv4 transcript
MRKLRQTGTTIAGGQTLFQSPEEGWQLYTSAQAPDGKCVCTAVIPAQSTCARDGRSRELR
QLMEKVQNVSQSMEVLELRTFRDLQYVRSMETLMRSLDARLRAADGSVSAKSFQELKDRM
TELLPLSSVLEQYKADTRTIVRLREEVRNLSGNLAAIQEEMGAYGYEDLQQRVMALEARL
HACAQKLGCGKLTGVSNPITIRAMGSRFGSWMTDTMAPSADSRVWYMDGYYKGRRVLEFR
TLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPG
AGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVVRSWDTGYP
KRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRE
RALYTWNNGHQVLYNVTLFHVISTAGDP*
homology100.00 (449 / 449)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Olfm2 (ENSMUSG00000032172)
Transcript ID ENSMUST00000034692
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TATGTGCCCTGTTGATCAAACTCAGGATTTCAGGCTTTTAGCTTTATCTA
CTGGGCAATCTTGCCAGCCCAAGGAGGCTAGTGCCATCTTTGGTGAGAAGAATTTGAGAG
GCATGGAGGAAGGAGAAAGGGGTTCCTTGTAAGTGCTCCCAGTCCTTACAGAAGCCTGGC
TGTGTGAGCTAGGCCTGTCTCCTAGCACCCAAGGTGAGGAGGTGAGAAAGGCCACCATTG
TGGAGGCCCAGATAGCCCAGTGATCTTAGAGGCTGATGTCAGATAGGCATACCTGGAGAC
ATGACTCAGAAGGATGGACGCATGCCATCCAAGTATGAGTTCAGATTCCCCAATATCTAA
CCCAGAAGTCAGATGTGGCATGCCTGCACTGCATTTCAGGGGAGGCTGAGACAGGCTCTC
TGGGGCCGGTCTGACCAGCTTAGCCAAATCAGGGAGCCCCAAGTACAGTGAGAGACCTTG
TCAAAAATTTAGGTGCAGGCGGGTTTGGTAGCCCATGCCTTTAGTCTGAGCCAGAGCTAC
ACAGAGAGACTGTGTCTCAAAACTAACTTACTAAAAAGACTAAATAAAATCAATTAACTA
ATAAAACAAGGCAGAGAGGGGCACCGAGGAAGACAGTCCATGTATACCTCTGGCCTCCTC
ACTCAGGCACACAGGTCTTGCACAATCTACTCTTCCTTAGTCTCCACCCACCCCCTTCTG
ATACCTATTTGTACTTTCCTTCTTTTGTTTCCTATGTCACTCAAATTTCTTTTTACACTT
ATTTAAAGTGCTAACGTGGTGGGATGGGTGGCCGTATGGCCACAGCCTTCAAGTGGAGGT
CAGAGGACACTTTGGGGGACACTTTCCTCTTCAGAGATCCAGCTCAGGTTACCAGGCTCT
GTGGTAAGCACTTTTACACACTCAGCCATTGCTTCCCCCCACCCCCAGACCTCCCCAGCC
CTTCCTCAAGTCCTGTCTGTCTCCATAACGCGGTGTTCTTGAGTTGAGCG
1 EXON 1 20728113 20728219 - 0 107
GCAGGCTACCTCTGGCTTCTTACACATACCTGACCCATCAGGCCCCCAGAACCACTTTAC
AGATGAGGAAACTGAGACAGACCGGAACAACTATTGCTGGAGGTCAG
INTRON 1 - 2 20675724 20728112 52389
ATAGGGGCTGAACCTGCTTCTCAGT..........TCTGACTACAGCCTTTCCTCCACAG
2 EXON 2 20675574 20675723 0 0 150
ACTCTCTTCCAGAGCCCGGAGGAGGGCTGGCAGCTCTACACGTCAGCCCAGGCACCTGAT
GGCAAGTGCGTCTGCACAGCCGTGATCCCTGCGCAGAGCACCTGTGCCCGAGACGGTCGG
AGCAGGGAGCTTCGGCAACTCATGGAGAAG
INTRON 2 - 3 20672774 20675573 2800
GTAGGGCCTGGCAGCTGCTGGGGGA..........GTCTCCTGAATGGTTTTCCTTCTAG
3 EXON 3 20672627 20672773 0 0 147
GTCCAGAATGTGTCGCAGTCCATGGAGGTCCTTGAGCTAAGGACATTCCGGGATCTCCAG
TATGTTCGCAGCATGGAGACCCTCATGAGGAGCCTGGATGCAAGGCTCAGAGCAGCCGAT
GGGTCAGTCTCAGCCAAAAGCTTTCAG
INTRON 3 - 4 20672355 20672626 272
GTGAGTTCTTCTGAGCTCAGCTCTG..........GCGGCCATTTTCTCCTGGTGAGCAG
4 EXON 4 20672135 20672354 0 1 220
GAACTGAAGGACAGGATGACAGAGCTGCTGCCCCTGAGTTCAGTGCTGGAGCAGTACAAG
GCAGACACACGAACCATTGTGCGCCTGCGGGAGGAGGTGAGGAACCTCTCTGGCAACCTG
GCTGCCATCCAAGAGGAAATGGGTGCCTACGGGTACGAGGACTTGCAACAGCGCGTGATG
GCCCTGGAAGCCCGACTCCATGCCTGCGCGCAGAAGCTGG
INTRON 4 - 5 20671807 20672134 328
GTATGCCTTGACCCTGAAGCTTGCC..........CACGCTCACTGTTCCCATCTCCCAG
5 EXON 5 20671700 20671806 1 0 107
GCTGCGGGAAGCTGACAGGCGTCAGTAACCCTATTACCATTCGGGCCATGGGGTCCCGCT
TCGGTTCCTGGATGACTGACACAATGGCCCCCAGTGCAGACAGCAGG
INTRON 5 - 6 20668785 20671699 2915
GTGAGTGATCTCACTTCAGTGACTG..........CAGTGACTGGCTGCTGCTCTCATAG
6 EXON 6 20667986 20668784 0 - 799
GTCTGGTACATGGATGGTTATTACAAAGGCCGCCGAGTGCTGGAGTTCCGTACTCTGGGA
GACTTCATCAAAGGCCAGAACTTCATCCAGCACCTGCTGCCACAGCCATGGGCAGGTACG
GGCCATGTGGTATACAATGGCTCTCTCTTCTACAATAAGTACCAGAGCAATGTGGTGGTC
AAGTACCACTTCCGGTCCCGCTCGGTGCTGGTGCAGAGGAGCCTCCCGGGGGCTGGTTAC
AATAACACCTTCCCCTATTCCTGGGGCGGCTTCTCGGACATGGACTTCATGGTAGACGAG
AGTGGGCTGTGGGCTGTGTATACCACCAACCAGAATGCGGGCAACATCGTAGTCAGTCGG
CTGGACCCTCACACCCTGGAGGTCGTGAGATCCTGGGACACCGGGTACCCTAAGCGCAGC
GCCGGCGAGGCCTTCATGATCTGCGGTGTCCTCTATGTGACCAACTCTCACCTGGCCGGA
GCCAAGGTCTACTTTGCGTACTTCACCAACACGTCCAGCTATGAGTACACGGATGTGCCC
TTCCACAACCAGTATTCGCACATCTCGATGCTGGATTACAACCCCAGGGAGCGGGCCCTG
TATACCTGGAACAACGGGCACCAGGTGCTGTACAACGTCACCCTGTTCCACGTCATCAGC
ACTGCCGGGGACCCCTAGGTGCCCCTGCAAGGGCTTTGGGGAGCCTTCCCACATCGCCTG
TGACCCCCACCCCAGCCTTCTCTTGGTCATGCCCTTGCCTTCCTAGATTCCGTCTCCCCA
CTTCCCCAGCCCAGCTTTC
3' upstream sequence
TGTTCTCAGTATCTCTACCCATGCATTTCCCCCATTTTATTGATCTCTGCTTTTGATACT
CCACTTCTGAGTCTTTCTGCCTTTTTATGGATGCTTCTCTTCCTTATTGATCGAACCTCT
CTTCTCCTCTCCCTCCATCCACTCTCCCTCCTCTTCCTTTCCCACTTTCCCACATTCCTT
ACCCCTCACTCCCACCCTATCCCTGGATCTGAGTGCATGGATTTTGTTTTTTAAATTTAT
TATTTACATGTTTTCTTTCCGGGTTGCCAGAATAAACCGGACCTTTGACATTTGGTGCCT
GGGTTGTTTTGTAGCTAGTGTTAACTGCAGACTTGTCTCCACGGAGTCTCTATTACCTGT
GCTTCTGGTGTGACCTGAGGTGGCGTCCTTAGACAGCCCTTCCCAGAGCTTGCTAGGCCC
TGGAGGAGCCTACCCAACCCAAAGGTGTTTTAGTCGAATGCCATTAATTTAAAAGCAACT
GGATCAGAACAGCATAGAGTTCTATTATGGCGATGAAAACTGGCCTTCAGTGAGCATTCC
CCAGAGCTGTCTCACTCACTCATCACACCGGCACATCACTAAGCTGTCTGGGTCTAATGG
CTTTTTAACAGTTTGGATGCTCTTGAGGTTTGGACCCCCAATTTCTTCTCTGCTATGTAA
TTGCAGAGACCGTTTTTACACAAGTCATACTAGTTAACTGCAAGACTCAACTAAAAGGTG
TACCTAGGCAGGGTTTGAGCAAACCCACTGCACTCTTCTTAGAGTGGGGCAGAGATGTAC
TCAGTGCAGTGGGGACAGGAGTCCTGAAACTGAGCCATGAGCTACTCCTCCTTAGGTAAC
TCCTGGCAGTCTCTCCCTTAATAAATCTATTCATGCTGGGTGTAGTGGCGCACACCTTTA
ATCCCAGCACCTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCTCGAGGCCAGCC
TGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACA..........

Sequence Detail Report

Gene Symbol (Gene ID) Olfm2 (ENSMUSG00000032172)
Transcript ID ENSMUST00000034692
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 449 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information