MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Tfap2d (ENSMUSG00000042596)

Cross Reference

CCDS	CCDS14838.1
EMBL	AF421891, BC152324, BC152325
GO	GO:0000977, GO:0000981, GO:0005515, ...show all
goslim_goa	GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name	Tfap2d-001
OTTP	OTTMUSP00000032660
OTTT	OTTMUST00000065512
protein_id	AAI52325.1, AAI52326.1, AAL16940.1
RefSeq_mRNA	NM_153154.2
RefSeq_peptide	NP_694794

RefSeq_peptide_predicted	XP_006495560.1, XP_006495561.1, XP_006495562.1
UCSC	uc007akp.1
UniParc	UPI00000242C2
Uniprot/SWISSPROT	Q91ZK0
Vega_transcript	OTTMUST00000065512, Tfap2d-001
Vega_translation	178803, OTTMUSP00000032660

Definition

protein_id:ENSMUSP00000037699
translation:

MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYF
STNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNAR
ALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQG
SVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSP
PECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHL
ARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLG
SSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGA
ADSGQGHANSEKAPLRKASEAAVKEGKTEKTD

Chromosome

Length
Position(start - end)

62921
19103256 - 19166178

Orient to Chromosome

plus

Link

Location : (1:19103256-19166178)
/

Detail Map

name	Gm15825 (ENSMUSG00000089787)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm15825 note : predicted gene 15825 [Source:MGI Symbol;Acc:MGI:3801887]

name	Tfap2d (ENSMUSG00000042596)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Tfap2d note : transcription factor AP-2, delta [Source:MGI Symbol;Acc:MGI:2153466]

name	Gm10075 (ENSMUSG00000100720)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm10075 note : predicted gene 10075 [Source:MGI Symbol;Acc:MGI:3710521]

name	Tfap2d (ENSMUSG00000042596)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000037294

name	Tfap2d (ENSMUSG00000042596) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14838.1 Uniprot/SWISSPROT:Q91ZK0 RefSeq_peptide:NP_694794 RefSeq_mRNA:NM_153154.2 RefSeq_peptide_predicted:XP_006495560.1 RefSeq_peptide_predicted:XP_006495561.1 RefSeq_peptide_predicted:XP_006495562.1 Vega_transcript:OTTMUST00000065512 Vega_transcript:Tfap2d-001 UCSC:uc007akp.1 EMBL:AF421891 EMBL:BC152324 EMBL:BC152325 GO:GO:0000977 GO:GO:0000981 GO:GO:0005515 GO:GO:0005634 GO:GO:0005667 GO:GO:0006351 GO:GO:0042127 GO:GO:0043524 GO:GO:0045893 GO:GO:0045944 GO:GO:0061379 MGI_trans_name:Tfap2d-001 Vega_translation:178803 Vega_translation:OTTMUSP00000032660 goslim_goa:GO:0001071 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 protein_id:AAI52325.1 protein_id:AAI52326.1 protein_id:AAL16940.1 OTTP:OTTMUSP00000032660 OTTT:OTTMUST00000065512 UniParc:UPI00000242C2
definition	note : transcript_id=ENSMUST00000037294 protein_id : ENSMUSP00000037699 translation : MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHANSEKAPLRKASEAAVKEGKTEKTD

name
type	misc_feature
link
xref
definition	note : contig AC098736.4 1..208952(-1)

name	Gm15825 (ENSMUSG00000089787)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000065514 Vega_transcript:OTTMUST00000065514 Clone_based_vega_transcript:AC098736.3-001 MGI_trans_name:Gm15825-001 OTTT:OTTMUST00000065514 RNACentral:URS000076A73A
definition	note : antisense note : transcript_id=ENSMUST00000159108

name	Tfap2d (ENSMUSG00000042596)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000065513 Vega_transcript:OTTMUST00000065513 MGI_trans_name:Tfap2d-002 OTTT:OTTMUST00000065513
definition	note : processed_transcript note : transcript_id=ENSMUST00000149505

name	Gm10075 (ENSMUSG00000100720)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000065511 Vega_transcript:OTTMUST00000065511 Clone_based_vega_transcript:AC098736.2-001 MGI_trans_name:Gm10075-001 OTTT:OTTMUST00000065511
definition	note : processed_pseudogene note : transcript_id=ENSMUST00000162030

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tfap2d (ENSMUSG00000042596)
Transcript ID	ENSMUST00000037294

Reports
substitution
cSNPs	2
Insertion	39
Deletion	56
SNPs	-1kb 19098402(c.-4854G>A), 19100052(c.-3204A>T), 19100073(c.-3183A>G), 19100228(c.-3028C>T), 19100810(c.-2446G>A), 19100836(c.-2420G>A), 19101618(c.-1638A>G), 19101687(c.-1569T>C), 19101703(c.-1553G>A), 19102246(c.-1010A>C), 19102250(c.-1006A>C), 19102438(c.-818G>C), 19102550(c.-706A>T), 5'UTR CDS 19142949(c.996T>C), 19148388(c.1110T>C), 3'UTR INTRON 19103934(c.40-430A>G), 19105171(c.537+310G>A), 19105519(c.537+658G>A), 19105576(c.537+715C>T), 19105607(c.537+746G>A), 19105672(c.537+811G>T), 19105950(c.537+1089G>A), 19106973(c.538-1277C>A), 19108112(c.538-138G>C), 19108373(c.598+63T>C), 19108419(c.598+109G>A), 19108754(c.598+444C>G), 19109397(c.598+1087T>C), 19110590(c.598+2280C>A), 19110693(c.598+2383C>T), 19110901(c.598+2591A>C), 19111605(c.598+3295T>A), 19111649(c.598+3339T>G), 19112146(c.598+3836A>G), 19112457(c.598+4147T>C), 19112538(c.598+4228G>A), 19112682(c.598+4372G>T), 19112812(c.598+4502G>C), 19112909(c.598+4599G>A), 19112939(c.598+4629A>T), 19112983(c.598+4673C>A), 19113031(c.598+4721T>C), 19113143(c.598+4833T>C), 19113152(c.598+4842T>C), 19113437(c.598+5127C>T), 19113702(c.599-5128C>T), 19113712(c.599-5118T>C), 19113761(c.599-5069C>T), 19113831(c.599-4999G>A), 19113839(c.599-4991A>C), 19113926(c.599-4904G>A), 19113930(c.599-4900A>G), 19114010(c.599-4820T>G), 19114105(c.599-4725C>A), 19114207(c.599-4623T>C), 19114211(c.599-4619T>C), 19114215(c.599-4615T>C), 19114411(c.599-4419G>A), 19114466(c.599-4364G>T), 19114497(c.599-4333C>T), 19114565(c.599-4265G>A), 19114598(c.599-4232C>T), 19115101(c.599-3729A>C), 19115212(c.599-3618A>C), 19115213(c.599-3617G>C), 19116263(c.599-2567A>G), 19116373(c.599-2457T>A), 19116475(c.599-2355T>C), 19116535(c.599-2295T>G), 19116568(c.599-2262G>A), 19116631(c.599-2199T>C), 19116637(c.599-2193A>G), 19116665(c.599-2165G>A), 19116686(c.599-2144T>C), 19116690(c.599-2140C>A), 19116801(c.599-2029T>C), 19116809(c.599-2021T>C), 19116907(c.599-1923C>T), 19117059(c.599-1771C>T), 19117184(c.599-1646G>A), 19117207(c.599-1623A>C), 19117302(c.599-1528G>A), 19117312(c.599-1518C>G), 19117320(c.599-1510A>G), 19117321(c.599-1509G>T), 19117400(c.599-1430A>G), 19117650(c.599-1180T>C), 19118237(c.599-593G>C), 19118456(c.599-374A>G), 19118529(c.599-301G>C), 19118641(c.599-189C>G), 19118734(c.599-96T>A), 19119300(c.883+20C>T), 19119354(c.883+74G>T), 19119700(c.883+420C>T), 19119726(c.883+446C>T), 19119740(c.883+460T>C), 19120062(c.883+782G>C), 19120124(c.883+844A>G), 19120645(c.883+1365G>A), 19121550(c.883+2270T>C), 19121958(c.883+2678A>T), 19121990(c.883+2710A>G), 19122150(c.883+2870T>A), 19122605(c.883+3325G>A), 19122806(c.883+3526T>C), 19122849(c.883+3569C>A), 19122928(c.883+3648G>A), 19123018(c.883+3738G>C), 19123061(c.883+3781G>A), 19123202(c.883+3922T>G), 19123247(c.883+3967A>G), 19123373(c.883+4093T>C), 19123377(c.883+4097T>C), 19123384(c.883+4104C>G), 19123389(c.883+4109G>C), 19123541(c.883+4261A>C), 19123667(c.883+4387G>T), 19124189(c.883+4909T>G), 19124328(c.883+5048A>C), 19124550(c.883+5270A>G), 19124605(c.883+5325T>A), 19124822(c.883+5542G>A), 19124830(c.883+5550A>G), 19124852(c.883+5572T>A), 19124872(c.883+5592C>G), 19124902(c.883+5622C>T), 19124934(c.883+5654T>C), 19125017(c.883+5737A>G), 19125050(c.883+5770T>C), 19125077(c.883+5797A>G), 19125083(c.883+5803C>T), 19125096(c.883+5816T>C), 19125141(c.883+5861A>C), 19125291(c.883+6011A>C), 19132666(c.884-10171T>C), 19132717(c.884-10120A>G), 19132836(c.884-10001A>T), 19133396(c.884-9441T>C), 19133473(c.884-9364G>C), 19133722(c.884-9115A>T), 19133729(c.884-9108G>A), 19133786(c.884-9051G>A), 19133989(c.884-8848A>G), 19133990(c.884-8847C>T), 19133991(c.884-8846A>G), 19134119(c.884-8718A>G), 19134133(c.884-8704A>G), 19134161(c.884-8676C>T), 19134162(c.884-8675T>A), 19134205(c.884-8632C>A), 19134231(c.884-8606C>T), 19134258(c.884-8579T>A), 19134334(c.884-8503A>G), 19134500(c.884-8337G>A), 19134795(c.884-8042C>T), 19134900(c.884-7937C>T), 19135107(c.884-7730A>G), 19135215(c.884-7622A>G), 19135705(c.884-7132G>C), 19135855(c.884-6982G>A), 19136011(c.884-6826G>C), 19136687(c.884-6150C>T), 19136904(c.884-5933C>T), 19137029(c.884-5808A>C), 19137030(c.884-5807T>A), 19137031(c.884-5806T>A), 19137033(c.884-5804G>T), 19137129(c.884-5708C>T), 19137231(c.884-5606T>A), 19137378(c.884-5459G>A), 19138091(c.884-4746A>G), 19138190(c.884-4647A>C), 19138312(c.884-4525C>A), 19139234(c.884-3603T>C), 19139254(c.884-3583C>T), 19139280(c.884-3557G>T), 19139286(c.884-3551G>A), 19139383(c.884-3454A>C), 19139542(c.884-3295A>G), 19139586(c.884-3251C>G), 19139730(c.884-3107A>T), 19139757(c.884-3080A>G), 19139923(c.884-2914G>A), 19139966(c.884-2871T>A), 19140005(c.884-2832C>A), 19140039(c.884-2798G>A), 19140109(c.884-2728G>A), 19140114(c.884-2723T>A), 19140123(c.884-2714G>A), 19140195(c.884-2642G>A), 19140383(c.884-2454A>T), 19140417(c.884-2420C>A), 19140622(c.884-2215A>G), 19140692(c.884-2145T>C), 19140854(c.884-1983C>A), 19140916(c.884-1921T>C), 19141066(c.884-1771G>A), 19141213(c.884-1624A>G), 19141309(c.884-1528G>A), 19141313(c.884-1524G>A), 19141467(c.884-1370G>A), 19141488(c.884-1349C>A), 19141714(c.884-1123T>G), 19141866(c.884-971G>T), 19142113(c.884-724T>C), 19142289(c.884-548G>A), 19142316(c.884-521T>C), 19142753(c.884-84A>G), 19142986(c.1025+8A>C), 19143033(c.1025+55T>C), 19143200(c.1025+222T>G), 19143212(c.1025+234G>C), 19143307(c.1025+329C>T), 19143506(c.1025+528C>T), 19143647(c.1025+669A>T), 19143680(c.1025+702G>C), 19143698(c.1025+720G>A), 19143702(c.1025+724G>A), 19143724(c.1025+746T>G), 19143767(c.1025+789G>A), 19143841(c.1025+863C>A), 19144550(c.1025+1572G>A), 19145145(c.1025+2167A>G), 19145387(c.1025+2409T>C), 19145430(c.1025+2452A>G), 19145702(c.1026-2602A>T), 19146068(c.1026-2236T>C), 19146116(c.1026-2188A>G), 19146184(c.1026-2120A>G), 19146213(c.1026-2091T>C), 19146223(c.1026-2081T>C), 19146226(c.1026-2078G>T), 19146246(c.1026-2058T>A), 19146247(c.1026-2057C>T), 19146296(c.1026-2008T>C), 19146340(c.1026-1964A>T), 19146392(c.1026-1912G>A), 19146404(c.1026-1900C>T), 19146418(c.1026-1886T>C), 19146420(c.1026-1884T>A), 19146458(c.1026-1846C>G), 19146541(c.1026-1763T>C), 19146634(c.1026-1670G>A), 19146716(c.1026-1588A>G), 19146720(c.1026-1584C>A), 19146750(c.1026-1554A>G), 19148035(c.1026-269C>A), 19148114(c.1026-190A>G), 19148160(c.1026-144G>T), 19148240(c.1026-64A>G), 19148450(c.1139+33C>A), 19148521(c.1139+104T>C), 19148526(c.1139+109A>G), 19148532(c.1139+115T>C), 19148541(c.1139+124G>T), 19148557(c.1139+140A>G), 19148647(c.1139+230T>C), 19148707(c.1139+290T>G), 19148891(c.1139+474T>C), 19148896(c.1139+479A>G), 19148944(c.1139+527T>C), 19148945(c.1139+528G>A), 19149050(c.1139+633T>A), 19149071(c.1139+654G>C), 19149082(c.1139+665A>G), 19149183(c.1139+766G>A), 19149666(c.1139+1249A>C), 19149692(c.1139+1275C>T), 19149708(c.1139+1291A>G), 19149755(c.1139+1338C>G), 19149757(c.1139+1340A>G), 19149985(c.1139+1568G>C), 19150136(c.1139+1719C>T), 19150619(c.1139+2202T>A), 19150672(c.1139+2255C>T), 19150804(c.1139+2387A>G), 19151059(c.1139+2642C>T), 19151365(c.1139+2948C>A), 19151628(c.1139+3211T>A), 19151729(c.1139+3312A>G), 19151911(c.1139+3494T>C), 19152101(c.1139+3684C>T), 19154023(c.1139+5606G>T), 19154569(c.1139+6152C>T), 19155191(c.1139+6774T>C), 19155388(c.1139+6971T>C), 19155453(c.1139+7036C>T), 19156025(c.1139+7608G>A), 19156051(c.1139+7634C>T), 19156318(c.1139+7901A>G), 19156347(c.1139+7930A>C), 19156379(c.1139+7962G>A), 19156569(c.1139+8152A>G), 19157263(c.1140-8696G>A), 19157498(c.1140-8461C>T), 19157620(c.1140-8339C>T), 19158991(c.1140-6968C>G), 19159124(c.1140-6835A>G), 19159178(c.1140-6781A>T), 19159215(c.1140-6744A>G), 19159334(c.1140-6625A>G), 19159566(c.1140-6393A>G), 19160805(c.1140-5154T>A), 19161474(c.1140-4485T>A), 19161862(c.1140-4097T>A), 19162278(c.1140-3681G>A), 19162404(c.1140-3555A>G), 19162430(c.1140-3529C>T), 19162849(c.1140-3110T>C), 19163738(c.1140-2221A>G), 19163799(c.1140-2160T>C), 19164119(c.1140-1840G>A), 19164373(c.1140-1586G>A), 19164683(c.1140-1276G>T), 19165570(c.1140-389G>T), 19165766(c.1140-193T>G), +1kb 19166397(c.219A>G), 19166972(c.794G>A), 19169392(c.3214A>C), 19169936(c.3758G>A), 19170555(c.4377C>T), 19170629(c.4451T>A), 19171004(c.*4826A>G),
Insertions	-1kb 19098581 (c.-4675_-4674insT), 19100399 (c.-2857_-2856insTTC), 19102008 (c.-1248_-1247insGTG), 19102218 (c.-1038_-1037insAGAG), 5'UTR CDS 3'UTR 19166230 (c.52_53dupTT), INTRON 19108158 (c.538-88dupG), 19109988 (c.598+1678_598+1679insC), 19111843 (c.598+3542dupG), 19112405 (c.598+4097dupG), 19112745 (c.598+4441_598+4445dupCCCCA), 19113281 (c.598+4971dupG), 19113304 (c.598+5004dupT), 19113990 (c.599-4840_599-4839dupCC), 19114073 (c.599-4757_599-4756insCAGG), 19116867 (c.599-1954dupA), 19117680 (c.599-1149dupG), 19117853 (c.599-977dupT), 19117933 (c.599-887dupC), 19121582 (c.883+2302dupT), 19121627 (c.883+2356_883+2357dupTG), 19121638 (c.883+2358_883+2359dupGT), 19123058 (c.883+3778_883+3779insC), 19133430 (c.884-9404dupA), 19134080 (c.884-8750_884-8749dupAA), 19134423 (c.884-8414_884-8413insTTA), 19139715 (c.884-3122_884-3121insTA), 19139838 (c.884-3001_884-2999dupAAA), 19139862 (c.884-2975_884-2974insAAAAG), 19143394 (c.1025+417_1025+418insCTA), 19145837 (c.1026-2465dupT), 19146043 (c.1026-2261_1026-2260insAAT), 19148008 (c.1026-297_1026-296dupCA), 19148060 (c.1026-242_1026-241insGTGTTG), 19149173 (c.1139+757_1139+758dupTG), 19150323 (c.1139+1908dupA), 19161383 (c.1140-4569dupA), 19161631 (c.1140-4330_1140-4328dupGTT), 19161643 (c.1140-4307_1140-4305dupGTT), 19161657 (c.1140-4302_1140-4301insGTT), +1kb
Deletions	-1kb 19101510 (c.-1745_-1737delTACCTTGTG), 5'UTR 19103158 (c.-90delA), CDS 3'UTR 19166337 (c.160_161delAG), INTRON 19103309 (c.39+28_39+29delTG), 19107307 (c.538-931delT), 19108589 (c.598+280_598+281delTA), 19112066 (c.598+3764_598+3765delGG), 19113933 (c.599-4896delA), 19114181 (c.599-4619_599-4612delTATTTATT), 19114523 (c.599-4298_599-4296delGGG), 19114717 (c.599-4103_599-4102delTT), 19115566 (c.599-3257delT), 19116512 (c.599-2317delT), 19117030 (c.599-1787_599-1786delTT), 19117246 (c.599-1579delA), 19121203 (c.883+1945_883+1948delTTAT), 19124905 (c.883+5626_883+5627delGT), 19125469 (c.883+6198delT), 19134396 (c.884-8440delT), 19134485 (c.884-8348delA), 19134488 (c.884-8348delA), 19134995 (c.884-7841_884-7837delTTTTT), 19135006 (c.884-7829_884-7825delTGTTT), 19137033 (c.884-5802_884-5797delGTAGAC), 19137961 (c.884-4871delG), 19138233 (c.884-4595delG), 19138952 (c.884-3883_884-3882delAC), 19139555 (c.884-3281_884-3280delAA), 19140071 (c.884-2765_884-2762delAACG), 19140394 (c.884-2441delA), 19144413 (c.1025+1444_1025+1447delGGGG), 19146082 (c.1026-2221_1026-2220delTT), 19146594 (c.1026-1703delT), 19148044 (c.1026-259delT), 19148586 (c.1139+170_1139+174delACGTA), 19148596 (c.1139+180_1139+183delGATG), 19149549 (c.1139+1141delT), 19149829 (c.1139+1413_1139+1416delGTTC), 19150539 (c.1139+2123_1139+2126delTTTT), 19151503 (c.1139+3094delG), 19152798 (c.1139+4390delT), 19152806 (c.1139+4390delT), 19152873 (c.1139+4457_1139+4462delTTTTTT), 19152996 (c.1139+4580_1139+4582delAAC), 19153656 (c.1139+5240_1139+5242delAAG), 19153717 (c.1139+5301_1139+5305delTGGGG), 19153726 (c.1139+5310_1139+5313delGGGG), 19154257 (c.1139+5841_1139+5843delGTT), 19156256 (c.1139+7846delT), 19157129 (c.1139+8713_1139+8714delTT), 19157197 (c.1140-8753delA), 19157593 (c.1140-8359delT), 19159869 (c.1140-6088delT), 19162777 (c.1140-3175_1140-3170delCCCCCC), 19163751 (c.1140-2198_1140-2197delAA), +1kb 19166422 (c.245_255delTTGTTGTTGTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	0
synonymous substitutions	19142949 (p.Thr332Thr), 19148388 (p.Leu370Leu),
non-synonymous substitutions
B6 transcript (ENSMUST00000037294)	MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYF STNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNAR ALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQG SVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSP PECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHL ARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLG SSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGA ADSGQGHANSEKAPLRKASEAAVKEGKTEKTD*
MSMv4 transcript	MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYF STNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNAR ALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQG SVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSP PECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHL ARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLG SSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGA ADSGQGHANSEKAPLRKASEAAVKEGKTEKTD*
homology	100.00 (453 / 453)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tfap2d (ENSMUSG00000042596)
Transcript ID	ENSMUST00000037294


..........TGTGTGTGTGTGTGTCAGTGTGCGCTGTTGTTCCCTGTCCCTTTCCAGCA
CCCTCTTTGTAAATGTAATGCAAGTATTTGGGGGTCCTTTAGGGGTAATATAACTGCTTC
CTGTTGTTGAATGGTCCACACTCCCACCTTCCAAAATAGAAATAAGGAGAGACAGGCAGA
CAGACAGACAGATACAGAGAGGGACACAGAGAGGAGAACAAATAAAAAAACCAACCAACC
AAACAAACAAAAATCACACTGTTTAAAAGAAAAGGGAAAAGAAAAATAGTAAAGGGGGGA
AAACAGGCTGGGTTGGGGAGTGAAAGACATTTACTTAAGTGTGCAATATCCTCACACATC
TTTATTCTCATACATTTTTCCAGTTGTCCTACTTCTTTGTAACAGAAACTTAGGACTGTC
CATCATCATTATCTATCTTAAAAACTGCTTAAAAAAATGTTAGCCACCACCTGGTGTTGC
CTTTCAAGGACGAAGAACAGAAATTCAATGTAAATATGAGAAAAGGGGTATTGTTTTCTC
TTGGAAGAAGGCAGACATCCCAACTGGGCAAGACTGATTGCAATGCCTGTTGGAAAAAAA
GATCAGCTTTCAACATCCAGGGAGTGGAACCAATAGGAACAAATGCCCAGTCATGTAAAA
GAAAGGTTTAATTAATATATGTTTCTGTCTGTAAGCTGCATGTATTGGGGATAGATTTCT
ATCTTCGCAATAAAAATGTGTAAATGCTCTCTGCAGAGATGCGTCCTCACCTCAGTCGGT
ATAGAAAAGCATGATAAAGGTTGTGGAAAATGGATAAAAAATGTTGAAAGAACCCCCAGT
TCCTTATTAGGCGAAGATACAATATTTATTCCTTGTCTCATGGGATAAATCTCTTCTGCC
TATTGTCCTCCCCGTTCTCACTGCTGATGCTTAATTTTCAAAACTTCTATATTACCAAGG
GACCTACGACATCAGCCAAAGAAATTCTCAGCAAGTACAAAATCTGTTCC
AGGGAGCTGCTTTTGTGCAGAGGGAAAATTTTGTTCCTACAGGTTTTTTAAGTGGGTACGAGGCAAGGAGCTATCTGATCCGGGCAAAACCATTACAGTTTAGATCTCTATCTACGGAACATTTTTTTTCTTCCTTTAAAAAAAATTGGAAAATACAAGAAGTTTTGGATTTTTTTTTCCTGATTCTTTTTTTGGAGGGGGAAATTGCATCGTAAGCTTTTGGAGAAACCCATCATGTCAACTACCTTTCCCGGACTAGTCCACGATGCGGAG
GTATTATTACTTTTTTGTGTGTGTG..........TCCCCTTTCCCCCTCTTCCTTCCAG
ATACGTCACGACGGATCAAACAGCTACCGTTTGATGCAGCTTGGCTGTCTGGAGTCCGTAGCCAATTCCACGGTTGCCTATTCCTCCTCCTCTCCTTTAACTTACTCTACCACCGGCACCGAGTTTGCGTCCCCCTACTTCTCCACTAACCACCAGTACACCCCGCTCCACCACCAGTCCTTCCATTACGAGTTCCAGCACAGCCACCCGGCGGTCACTCCCGACGCCTACTCTCTGAACTCGCTCCACCACTCACAACAGTACTACCAGCAGATTCACCACGGGGAGCCCACCGACTTTATTAACCTGCACAATGCGCGGGCTCTCAAGTCCTCCTGCCTGGACGAGCAGAGGCGGGAGCTGGGTTGCCTCGATGCCTACCGCCGCCACGACCTGTCCCTCATGAGCCATGGCTCTCAGTATGGAATGCACCCAGATCAAAGACTCCTGCCAGGGCCCAGCCTGGGGCTGGCCGCCGCGGGAGCCGACGACTTGCAG
GTAAATAAGCGTGCAGCGGGTTTGT..........TCTCTTTCTTTCTTCTTTTCTAAAG
GGTTCCGTGGAAGCCCAGTGTGGGATTGTTCTCAACGGCCAAGGGGGGGTGATCAGAAGAG
GTGAGTAGGAATATCTTGGTCTCAA..........AACATATACATTTTTCTCTCCCAAG
GTGGCACCTGTGTAGTCAACCCCACAGACTTGTTTTGCTCAGTTCCCGGTCGTTTGTCTCTTCTCAGTTCTACTTCCAAATACAAGGTGACTATCGCTGAGGTAAAGAGGCGCCTCTCACCACCCGAGTGCCTCAATGCTTCACTTCTGGGAGGCATTCTGAGGAG
GTAAGCTGGAGCTGTGCCCTGCTGT..........ACGACTTTTATTTGAATTTGGACAG
AGCAAAATCCAAGAATGGTGGTCGTTGCCTGAGAGAAAAACTGGATAGGCTTGGCCTAAACTTGCCAGCTGGAAGACGGAAAGCAGCCAACGTTACCTTGCTCACTTCTTTAGTTGAAG
GTATGACTTTCATGTTCCTTGAGGA..........AGTGACTTGTGTTTTCCACCAATAG
GTGAGGCTTTGCACTTGGCTCGGGATTTTGGCTACACGTGTGAAACCGAGTTTCCAGCCAAGGCAGTGGGAGAGCATCTCGCCAGACAACATATGGAACAGAAAGAACAGACCGCAAGAAAAAAGATGATCCTAGCCACCAA
GTAAGTGCTGTGGAGATGCCTTCAT..........TTCAGCTTTGTACTCTTTGTTGCAG
GCAAATTTGTAAAGAATTTCAAGACCTCCTGAGCCAGGATAGATCACCACTGGGATCCTCCAGACCCACTCCCATTCTAGACCTCGACATCCAGAGGCACTTAACACATTTCAG
GTAAGACAGCTTTTCCCATCTGCTT..........TTTTCCAACTTCTTCTCATTTCCAG
TTTGATCACTCATGGTTTTGGGACACCAGCAATATGTGCAGCTCTAAGCACTTTCCAAACAGTCCTCAGTGAGATGCTTAACTACTTGGAAAAACACACTACTCACAAAAACGGTGGTGCGGCAGACTCTGGCCAAGGACATGCCAACTCGGAGAAAGCCCCGCTGCGGAAAGCTTCAGAGGCTGCTGTGAAAGAGGGCAAAACAGAAAAGACAGACTAGCTGCATCAAACAGAATCTATTTCCAGAGAGTCTTGCTGCTCATATTTTTTTTTCTAATATATACATCATTGAGGGTGACTAATCTTCAGCGGACCAAATCTTTACCCTCCCTGAGCCCTCCATAAAATGAAATCAAAAGTGGAAATGAAAACAAAAAAAAGTAAACAA
AAAAATGACAGATCCAAAACAATGAGAAAGAGGAAAACGGCAGTGTAACTGTGTGATGGA
ATTGTCACTTTTTTTTTTGTTGTTGTTATGATAAAACTTCTGTGCACGTACTTGATTGCT
CTGAATTATATACACCACAGTTTTCAAGCACTTCTGGACTTCGGAGAGGCAGCACATGCT
TTTTCACATATAATTGATGCACTTTCTTATCCAGCTATATAGTTAGGGGTCAGTCAGAGA
GCATGACCAAACTGGAGTCTGTCACCAATGACTGCTGCTCCAGTCTTCCCTGACTTAACT
CCCCATCACTGAAGAGTGCCTCTTTCTATTAAATAGGCCAATCTGAAATTAACCACTAAT
ACATGTTTGAGGAACTGAAAAGGACAGTCACAAACTTTTTGAGCTGACAGCAGTTCTAAA
TATTTGATCACCCCAGATTACTGAATTATCCGTGCCTTGGTGGTGTTTAAAAATTCCAGA
AACTGTCTCCCTTCCTTTCCTCTTAGCTCCCCTTTCCCATTTCTAAGAACATAATCAAAA
GACTTATACAACACTGTAGGGATAAGAGATGAACTCTTCCATGCCAACTGCACAGTTCAA
AGAAACACTGAATTTGGTCAATGGGATATACAGATGCAGAGGAGGGGAGCTTTGCCATTA
TTGGGCTCTCTGTCAAATGCAATGACATTATTTTGCCTAAAAATTATGAGAATAGGAGGA
GGGTATTTCTGATCAGTCCTGCCTTTAAGACATGGGACCCCCTTCAAAGTGCTGGTGGCA
ATGATTGTGTGGTTGAAGTGAGAGCCATGTTTTTGCGCTTCTATGCTATTTCTACCTGTT
CCACATGTTCTAAACTTTTAGAGGCACAAAAGCACCCTGGCTGTGTTCAATAAAGAAAGC
AAACAGAATAATTAGAGAAGACTTTTGCTTTTCAGATGTTTTCTCTTTTTTCCCATAGCT
TGTTATAGCTTTTTTACCTTTCATTTAAGACACTACAAAC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGTGTGTGTGTGTGTCAGTGTGCGCTGTTGTTCCCTGTCCCTTTCCAGCA CCCTCTTTGTAAATGTAATGCAAGTATTTGGGGGTCCTTTAGGGGTAATATAACTGCTTC CTGTTGTTGAATGGTCCACACTCCCACCTTCCAAAATAGAAATAAGGAGAGACAGGCAGA CAGACAGACAGATACAGAGAGGGACACAGAGAGGAGAACAAATAAAAAAACCAACCAACC AAACAAACAAAAATCACACTGTTTAAAAGAAAAGGGAAAAGAAAAATAGTAAAGGGGGGA AAACAGGCTGGGTTGGGGAGTGAAAGACATTTACTTAAGTGTGCAATATCCTCACACATC TTTATTCTCATACATTTTTCCAGTTGTCCTACTTCTTTGTAACAGAAACTTAGGACTGTC CATCATCATTATCTATCTTAAAAACTGCTTAAAAAAATGTTAGCCACCACCTGGTGTTGC CTTTCAAGGACGAAGAACAGAAATTCAATGTAAATATGAGAAAAGGGGTATTGTTTTCTC TTGGAAGAAGGCAGACATCCCAACTGGGCAAGACTGATTGCAATGCCTGTTGGAAAAAAA GATCAGCTTTCAACATCCAGGGAGTGGAACCAATAGGAACAAATGCCCAGTCATGTAAAA GAAAGGTTTAATTAATATATGTTTCTGTCTGTAAGCTGCATGTATTGGGGATAGATTTCT ATCTTCGCAATAAAAATGTGTAAATGCTCTCTGCAGAGATGCGTCCTCACCTCAGTCGGT ATAGAAAAGCATGATAAAGGTTGTGGAAAATGGATAAAAAATGTTGAAAGAACCCCCAGT TCCTTATTAGGCGAAGATACAATATTTATTCCTTGTCTCATGGGATAAATCTCTTCTGCC TATTGTCCTCCCCGTTCTCACTGCTGATGCTTAATTTTCAAAACTTCTATATTACCAAGG GACCTACGACATCAGCCAAAGAAATTCTCAGCAAGTACAAAATCTGTTCC
1	EXON 1	19103022	19103294	-	0	273	AGGGAGCTGCTTTTGTGCAGAGGGAAAATTTTGTTCCTACAGGTTTTTTAAGTGGGTACG AGGCAAGGAGCTATCTGATCCGGGCAAAACCATTACAGTTTAGATCTCTATCTACGGAAC ATTTTTTTTCTTCCTTTAAAAAAAATTGGAAAATACAAGAAGTTTTGGATTTTTTTTTCC TGATTCTTTTTTTGGAGGGGGAAATTGCATCGTAAGCTTTTGGAGAAACCCATCATGTCA ACTACCTTTCCCGGACTAGTCCACGATGCGGAG
	INTRON 1 - 2	19103295	19104363			1069	GTATTATTACTTTTTTGTGTGTGTG..........TCCCCTTTCCCCCTCTTCCTTCCAG
2	EXON 2	19104364	19104861	0	0	498	ATACGTCACGACGGATCAAACAGCTACCGTTTGATGCAGCTTGGCTGTCTGGAGTCCGTA GCCAATTCCACGGTTGCCTATTCCTCCTCCTCTCCTTTAACTTACTCTACCACCGGCACC GAGTTTGCGTCCCCCTACTTCTCCACTAACCACCAGTACACCCCGCTCCACCACCAGTCC TTCCATTACGAGTTCCAGCACAGCCACCCGGCGGTCACTCCCGACGCCTACTCTCTGAAC TCGCTCCACCACTCACAACAGTACTACCAGCAGATTCACCACGGGGAGCCCACCGACTTT ATTAACCTGCACAATGCGCGGGCTCTCAAGTCCTCCTGCCTGGACGAGCAGAGGCGGGAG CTGGGTTGCCTCGATGCCTACCGCCGCCACGACCTGTCCCTCATGAGCCATGGCTCTCAG TATGGAATGCACCCAGATCAAAGACTCCTGCCAGGGCCCAGCCTGGGGCTGGCCGCCGCG GGAGCCGACGACTTGCAG
	INTRON 2 - 3	19104862	19108249			3388	GTAAATAAGCGTGCAGCGGGTTTGT..........TCTCTTTCTTTCTTCTTTTCTAAAG
3	EXON 3	19108250	19108310	0	1	61	GGTTCCGTGGAAGCCCAGTGTGGGATTGTTCTCAACGGCCAAGGGGGGGTGATCAGAAGA G
	INTRON 3 - 4	19108311	19118829			10519	GTGAGTAGGAATATCTTGGTCTCAA..........AACATATACATTTTTCTCTCCCAAG
4	EXON 4	19118830	19118995	1	2	166	GTGGCACCTGTGTAGTCAACCCCACAGACTTGTTTTGCTCAGTTCCCGGTCGTTTGTCTC TTCTCAGTTCTACTTCCAAATACAAGGTGACTATCGCTGAGGTAAAGAGGCGCCTCTCAC CACCCGAGTGCCTCAATGCTTCACTTCTGGGAGGCATTCTGAGGAG
	INTRON 4 - 5	19118996	19119161			166	GTAAGCTGGAGCTGTGCCCTGCTGT..........ACGACTTTTATTTGAATTTGGACAG
5	EXON 5	19119162	19119280	2	1	119	AGCAAAATCCAAGAATGGTGGTCGTTGCCTGAGAGAAAAACTGGATAGGCTTGGCCTAAA CTTGCCAGCTGGAAGACGGAAAGCAGCCAACGTTACCTTGCTCACTTCTTTAGTTGAAG
	INTRON 5 - 6	19119281	19142836			23556	GTATGACTTTCATGTTCCTTGAGGA..........AGTGACTTGTGTTTTCCACCAATAG
6	EXON 6	19142837	19142978	1	2	142	GTGAGGCTTTGCACTTGGCTCGGGATTTTGGCTACACGTGTGAAACCGAGTTTCCAGCCA AGGCAGTGGGAGAGCATCTCGCCAGACAACATATGGAACAGAAAGAACAGACCGCAAGAA AAAAGATGATCCTAGCCACCAA
	INTRON 6 - 7	19142979	19148303			5325	GTAAGTGCTGTGGAGATGCCTTCAT..........TTCAGCTTTGTACTCTTTGTTGCAG
7	EXON 7	19148304	19148417	2	2	114	GCAAATTTGTAAAGAATTTCAAGACCTCCTGAGCCAGGATAGATCACCACTGGGATCCTC CAGACCCACTCCCATTCTAGACCTCGACATCCAGAGGCACTTAACACATTTCAG
	INTRON 7 - 8	19148418	19165958			17541	GTAAGACAGCTTTTCCCATCTGCTT..........TTTTCCAACTTCTTCTCATTTCCAG
8	EXON 8	19165959	19166346	2	-	388	TTTGATCACTCATGGTTTTGGGACACCAGCAATATGTGCAGCTCTAAGCACTTTCCAAAC AGTCCTCAGTGAGATGCTTAACTACTTGGAAAAACACACTACTCACAAAAACGGTGGTGC GGCAGACTCTGGCCAAGGACATGCCAACTCGGAGAAAGCCCCGCTGCGGAAAGCTTCAGA GGCTGCTGTGAAAGAGGGCAAAACAGAAAAGACAGACTAGCTGCATCAAACAGAATCTAT TTCCAGAGAGTCTTGCTGCTCATATTTTTTTTTCTAATATATACATCATTGAGGGTGACT AATCTTCAGCGGACCAAATCTTTACCCTCCCTGAGCCCTCCATAAAATGAAATCAAAAGT GGAAATGAAAACAAAAAAAAGTAAACAA
	3' upstream sequence						AAAAATGACAGATCCAAAACAATGAGAAAGAGGAAAACGGCAGTGTAACTGTGTGATGGA ATTGTCACTTTTTTTTTTGTTGTTGTTATGATAAAACTTCTGTGCACGTACTTGATTGCT CTGAATTATATACACCACAGTTTTCAAGCACTTCTGGACTTCGGAGAGGCAGCACATGCT TTTTCACATATAATTGATGCACTTTCTTATCCAGCTATATAGTTAGGGGTCAGTCAGAGA GCATGACCAAACTGGAGTCTGTCACCAATGACTGCTGCTCCAGTCTTCCCTGACTTAACT CCCCATCACTGAAGAGTGCCTCTTTCTATTAAATAGGCCAATCTGAAATTAACCACTAAT ACATGTTTGAGGAACTGAAAAGGACAGTCACAAACTTTTTGAGCTGACAGCAGTTCTAAA TATTTGATCACCCCAGATTACTGAATTATCCGTGCCTTGGTGGTGTTTAAAAATTCCAGA AACTGTCTCCCTTCCTTTCCTCTTAGCTCCCCTTTCCCATTTCTAAGAACATAATCAAAA GACTTATACAACACTGTAGGGATAAGAGATGAACTCTTCCATGCCAACTGCACAGTTCAA AGAAACACTGAATTTGGTCAATGGGATATACAGATGCAGAGGAGGGGAGCTTTGCCATTA TTGGGCTCTCTGTCAAATGCAATGACATTATTTTGCCTAAAAATTATGAGAATAGGAGGA GGGTATTTCTGATCAGTCCTGCCTTTAAGACATGGGACCCCCTTCAAAGTGCTGGTGGCA ATGATTGTGTGGTTGAAGTGAGAGCCATGTTTTTGCGCTTCTATGCTATTTCTACCTGTT CCACATGTTCTAAACTTTTAGAGGCACAAAAGCACCCTGGCTGTGTTCAATAAAGAAAGC AAACAGAATAATTAGAGAAGACTTTTGCTTTTCAGATGTTTTCTCTTTTTTCCCATAGCT TGTTATAGCTTTTTTACCTTTCATTTAAGACACTACAAAC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Tfap2d (ENSMUSG00000042596)
Transcript ID	ENSMUST00000037294

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 453 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information