MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Rbm24 (ENSMUSG00000038132)

Cross Reference

CCDS	CCDS36651.1
EMBL	AC124411
GO	GO:0000166, GO:0003730, GO:0005575, ...show all
goslim_goa	GO:0003674, GO:0003723, GO:0003729, ...show all
MGI_trans_name	Rbm24-201
RefSeq_mRNA	NM_001081425.1
RefSeq_peptide	NP_001074894
UCSC	uc007qhe.1
UniParc	UPI00001E3069
Uniprot/SWISSPROT	D3Z4I3

Definition

protein_id:ENSMUSP00000043120
translation:

MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA
DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH
YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAA
SPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ

Chromosome

Length
Position(start - end)

10285
46419031 - 46429317

Orient to Chromosome

plus

Link

Location : (13:46419031-46429317)
/

Detail Map

name	Rbm24 (ENSMUSG00000038132)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rbm24 note : RNA binding motif protein 24 [Source:MGI Symbol;Acc:MGI:3610364]

name	Rbm24 (ENSMUSG00000038132)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000037923

name	Rbm24 (ENSMUSG00000038132) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36651.1 Uniprot/SWISSPROT:D3Z4I3 RefSeq_peptide:NP_001074894 RefSeq_mRNA:NM_001081425.1 UCSC:uc007qhe.1 EMBL:AC124411 GO:GO:0000166 GO:GO:0003730 GO:GO:0005575 GO:GO:0005634 GO:GO:0005737 GO:GO:0010830 GO:GO:0030154 GO:GO:0043488 MGI_trans_name:Rbm24-201 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0003729 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043226 UniParc:UPI00001E3069
definition	note : transcript_id=ENSMUST00000037923 protein_id : ENSMUSP00000043120 translation : MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAASPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ

name
type	STS
link
xref	UniSTS_NUM:180525 UniSTS:AI606861 WI_MRC-RH:467314
definition	note : map_weight=1 standard_name : AI606861

name
type	misc_feature
link
xref
definition	note : contig AC124411.5 1..144948(-1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rbm24 (ENSMUSG00000038132)
Transcript ID	ENSMUST00000037923

Reports
substitution
cSNPs	3
Insertion	16
Deletion	16
SNPs	-1kb 46413321(c.-5710G>A), 46413466(c.-5565A>T), 46414156(c.-4875C>T), 46414763(c.-4268A>C), 46415054(c.-3977A>G), 46415102(c.-3929T>C), 46415171(c.-3860A>T), 46415201(c.-3830T>C), 46415305(c.-3726T>C), 46415688(c.-3343T>C), 46415900(c.-3131G>T), 46415916(c.-3115A>G), 46416009(c.-3022G>A), 46416292(c.-2739T>C), 46416418(c.-2613G>C), 46416748(c.-2283A>G), 46417012(c.-2019T>C), 46417031(c.-2000G>A), 46417086(c.-1945G>A), 46417324(c.-1707A>G), 46417328(c.-1703T>A), 46417334(c.-1697G>A), 46417434(c.-1597C>A), 46417883(c.-1148A>C), 46418083(c.-948A>G), 46418198(c.-833C>A), 5'UTR 46418498(c.-533G>T), CDS 46429033(c.427G>A), 46429170(c.564A>G), 46429266(c.660C>G), 3'UTR 46429740(c.423C>T), 46429803(c.486G>A), 46429914(c.597G>A), 46430075(c.758C>T), 46430282(c.965G>T), 46430761(c.1444G>A), 46430825(c.1508G>A), 46430921(c.1604T>C), 46430988(c.1671A>T), INTRON 46419447(c.168+249A>G), 46419541(c.168+343A>G), 46419719(c.168+521T>A), 46419730(c.168+532C>T), 46419734(c.168+536T>C), 46420002(c.169-273A>G), 46420152(c.169-123G>A), 46420157(c.169-118T>C), 46420205(c.169-70G>A), 46420489(c.292+91T>C), 46420595(c.292+197A>G), 46420784(c.292+386T>C), 46420786(c.292+388G>C), 46420794(c.292+396A>G), 46420843(c.292+445G>A), 46420957(c.292+559G>A), 46421029(c.292+631T>A), 46421047(c.292+649G>A), 46421336(c.293-515G>A), 46421789(c.293-62T>G), 46422048(c.347+143G>A), 46422615(c.347+710G>A), 46422835(c.347+930C>T), 46423290(c.347+1385C>A), 46423372(c.347+1467T>C), 46423506(c.347+1601T>C), 46423562(c.347+1657T>C), 46423654(c.347+1749G>A), 46423945(c.347+2040G>A), 46423998(c.347+2093A>G), 46424016(c.347+2111G>A), 46424023(c.347+2118A>G), 46424049(c.347+2144C>T), 46424210(c.347+2305G>A), 46424695(c.347+2790C>T), 46425032(c.347+3127C>T), 46425159(c.347+3254G>A), 46425373(c.347+3468C>T), 46425743(c.348-3211G>A), 46425786(c.348-3168G>A), 46425850(c.348-3104A>G), 46425963(c.348-2991C>T), 46426093(c.348-2861C>T), 46426311(c.348-2643G>A), 46426410(c.348-2544A>G), 46426800(c.348-2154G>A), 46427086(c.348-1868T>C), 46427253(c.348-1701A>G), 46427552(c.348-1402T>C), 46427794(c.348-1160A>G), 46427931(c.348-1023C>T), 46427940(c.348-1014G>A), 46428508(c.348-446T>C), 46428559(c.348-395A>G), 46428613(c.348-341A>C), 46428805(c.348-149G>A), +1kb 46431206(c.1889G>A), 46431267(c.1950A>G), 46431449(c.2132A>C), 46431490(c.2173T>G), 46431548(c.2231A>G), 46431570(c.2253C>A), 46431593(c.2276A>G), 46431608(c.2291G>A), 46431615(c.2298C>G), 46431630(c.2313A>G), 46431631(c.2314T>C), 46431717(c.2400C>G), 46432003(c.2686T>A), 46432096(c.2779C>T), 46432137(c.2820C>A), 46432140(c.2823T>C), 46432405(c.3088T>C), 46432449(c.3132A>G), 46432938(c.3621G>A), 46432964(c.3647A>G), 46433009(c.3692C>A), 46433016(c.3699G>A), 46433142(c.3825C>T), 46433819(c.4502C>T), 46433948(c.4631C>T), 46433949(c.4632T>C), 46433981(c.4664A>G), 46434006(c.4689A>C), 46434187(c.4870T>C), 46434193(c.4876A>T), 46434266(c.4949A>G), 46434285(c.4968C>T), 46434347(c.5030A>T), 46434791(c.5474C>T), 46434868(c.5551A>G), 46434878(c.5561T>C), 46435044(c.5727G>A), 46435080(c.5763G>A), 46435088(c.5771T>C), 46435242(c.5925T>C), 46435456(c.6139T>C), 46435472(c.6155T>C), 46435536(c.6219C>T), 46435608(c.6291T>A), 46435849(c.6532T>C), 46435976(c.6659T>A), 46435983(c.6666C>A),
Insertions	-1kb 46415886 (c.-3145_-3144insCCAC), 46416271 (c.-2760_-2759insCAA), 5'UTR 46418325 (c.-705_-704insGCGC), 46418704 (c.-319dupA), CDS 3'UTR 46429620 (c.309dupT), INTRON 46422038 (c.347+139dupT), 46423767 (c.347+1863_347+1864insTGGGGGG), 46425615 (c.348-3334_348-3333insATGTGT), 46425917 (c.348-3034_348-3033insCAAG), 46426105 (c.348-2847_348-2842dupCACACA), 46428044 (c.348-907dupC), 46428384 (c.348-563_348-562dupTT), +1kb 46431330 (c.2013_2014insCCA), 46431887 (c.2570_2571insGG), 46432900 (c.3583_3584insA), 46434583 (c.5266_*5267insT),
Deletions	-1kb 46416313 (c.-2717delA), 46416317 (c.-2713delA), 5'UTR CDS 3'UTR 46430671 (c.1369delT), INTRON 46420121 (c.169-139_169-137delTTT), 46421024 (c.292+631delT), 46421222 (c.293-616_293-615delAG), 46421523 (c.293-327_293-326delTG), 46421639 (c.293-202delT), 46422709 (c.347+814delT), 46427402 (c.348-1551delG), +1kb 46433601 (c.4285delT), 46434250 (c.4934delA), 46435025 (c.5709delT), 46435054 (c.5738_5739delAT), 46435060 (c.5744_5745delAT), 46435492 (c.6176_6180delTTCTC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	1
synonymous substitutions	46429170 (p.Val188Val), 46429266 (p.Ala220Ala),
non-synonymous substitutions	46429033 (p.Ala143Thr),
B6 transcript (ENSMUST00000037923)	MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAA SPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ*
MSMv4 transcript	MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH YVYPQAFVQPGVVIPHVQPTAATASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAA SPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ*
homology	99.58 (237 / 237)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rbm24 (ENSMUSG00000038132)
Transcript ID	ENSMUST00000037923

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AAGTTCAAATTCAAAGTAATCTTTGTGAAACACCAGAAGTTCAAGGACAG CCTGGGATACACAATACCCTGTCTCAAAATAAGGGGGAGGGGTATTTTAATCTAAACCTT AAATATGATGGGCTGATTTCAAAGAGTCATTAATTTAAAGCCCTATTGAGCATAAGAACT GCCAACGAGCTGGCTTAAATTAATAAACATATACTACGTTTAGTGTATTCTATCTATGCT TCCAGAATTGCTGGTAGAAATCCATCGTTATGTAACAGCCCCCACCCTTTTAAAAGAAAT CATACTTTTTACAATTATATCCGGATAAATAAATGAGGTCAATTCACTAACCGTTCTGCA ATTCAAATAGAAGGAAATAGATTCTTTGCTTAGTGGGGAAAAAAAAAGGCGGAGGTGGGA GCGACTTGTGTTGAGACAGACATTGTACCCATCTTCCTGAATAACTAAGTTAGGCAGGAA GCACAAATTTGATGATCGTGGGAGGTACAGTACTAATTCATGGTCCTCTGCAGTAGTCAG CAGGGCCAGATGAATACAGACACCCTTTGCTAGCTGTGAGCCATTAAAGCCAACGTTTTT CTCAAGCATTCCCAAATGCTAGGGGCTATTATTATTATTCACCCCACCACATAACATCCC TGGGGCTCTTCCTCTTGGTTACCCACAGCACCAGCTTTTGGGGGCTAAGAAAACTTGAGA GTTCTTCTCACGGTTCAGACGCTAGAGACAGATCTCCTTGGTCCCAGGTGTTTGGGAGGG GACTGGCCTCTGTGCAAACCACCCCAGGCCCCGGGGGACTCTCAAGTCAACTGGTCGTGC CAGCGAGGCCTAGCAAGAAGCTAGCGTGGTCTGCTTCGGAGCGTCAATCAGCTCACTCTG GGTCCCTGAGGGAATCGCCAGGGGTCTTTGCGACTTTGACCAGTAGGAGCAGGCAACAAC AGAGCCAGGCCGCCTCCAGCCGTTTCCAACTCTGCCCCAGCAACAGCGCC
1	EXON 1	46418300	46419198	-	0	899	AGAGCCCCAGCCAGGCGACCCAGCGCCCGCGCGCGGGGAGAGAAGCAGCTGTTCCCAACA GCTGGGGGGCGGCGGCGCCGGGCGCCCCAGGTGCTGTCCCGGCCAATCGCAGGCGTCCGG CCCGCCCCCTCCCCAGCCGGGCGTCGACCCCCAGGGCCGCTGGGGAAAAAGGAATAGAGG GTTGGAGAGCGGTCCTCCTTCCGCACTGGTGTGGCAGCTACTAAGCAGAAGGGACGGTTC CCAGACCGAGCCGGGCCCAGCACCGCGCCCCCAGCTGCCACCTCCGCGCCCCCGGGACAC GGTAGCCTCTGAGCCAACCCCCATCCCACTAAGCCACTCGATTTTTTGAGAAAGAACCAT CTACCTCTTCTGGACTTGGAGACCACCACCCTCTCTGCATTTAAGAAAAAAAATATTTTT ATTTTATTTTTACTTTCACGCGGCGTGAGTGCAAAAGGCTCCCACAGTCCGCGGCTACGG AGCTGGTTACCCGGACGATCCGGAAGGTCTGGACAGTGACCGGACGCGGGGACTGGAGCA GAGCGCCTGGGCGAGTGTCGGGGACAGTGGGCCACTTGGGAAGCCGCGCGCCCAGCGCCC ACGCCGCCCCCTCGCCCCCGCGCGCGCCCTCGGCCCCCGGCGGCCGCCGCGCGCTGCGGG AGACGCGGAGCCCGAGGACCAGGCGCAGCCGCAGCCGCAGCCGGAGCCCGAGCCGCGGGG CGGGCGCGAAGATGCACACCACCCAGAAGGACACGACGTACACCAAGATCTTCGTGGGAG GGCTGCCCTACCACACCACCGACGCCAGCCTGCGCAAGTACTTTGAGGTCTTCGGAGACA TCGAGGAAGCGGTGGTCATCACAGACCGGCAGACCGGCAAGTCCCGGGGCTACGGATTT
	INTRON 1 - 2	46419199	46420274			1076	GTAAGTTACGTGGAAGAAGGACTCA..........GTGTCTGTCTGTGTATGTTGCTAAG
2	EXON 2	46420275	46420398	0	1	124	GTCACCATGGCTGACAGGGCTGCCGCTGAAAGGGCCTGCAAGGATCCCAACCCCATCATC GATGGTAGGAAGGCCAATGTGAATCTGGCATACTTGGGAGCAAAACCAAGAATCATGCAG CCAG
	INTRON 2 - 3	46420399	46421850			1452	GTGAGCAACACCCTCCTCCCCCTCC..........GAATTGTGGTGTGTTTTATTGCTAG
3	EXON 3	46421851	46421905	1	2	55	GTTTTGCCTTTGGCGTTCAACAGCTTCACCCAGCCCTTATCCAGAGACCTTTCGG
	INTRON 3 - 4	46421906	46428953			7048	GTAAGTCAATTTACCAAGCCCTCCC..........GACTTTGTTTCTTGTCTCTTCACAG
4	EXON 4	46428954	46431090	2	-	2137	GATCCCCGCCCACTACGTCTACCCGCAGGCTTTTGTGCAGCCTGGAGTGGTCATTCCCCA TGTGCAGCCCACAGCAGCCACGGCTTCCACCACACCGTACATTGATTACACTGGAGCCGC CTACGCTCAGTACTCCGCTGCCGCAGCCGCCGCCGCAGCGGCCGCTGCCTATGACCAGTA CCCCTATGCAGCATCCCCAGCTGCTGCAGGCTATGTGACCACTGGGGGCTACAGCTATGC TGTCCAACAGCCCATCACCGCCGCTGCGCCCGGGACAGCTGCTGCTGCGGCTGCAGCTGC TGCAGCCGCAGCGGCCTTTGGCCAGTACCAGCCTCAACAGCTGCAGACAGACCGAATGCA GTAGACCAGCTGTCTGATCAAAGTCAAAAGGGTTTCTCTTTTCCTCCTGATCTCCCAGTT TTTTAGTAGCTAATGAGAAAGTTAACAGTTGACCTGCCGGCTTTAAAGGGAGAAGGCAAG GCTAGTGTGAAGCAGAGGTGTTACTTTTTACCATACTCCCGGTAGTGCTACAGGTGATAA GGGGAGAAAGGGAGGGCGAGAAACAGTTTTTGAAGTCAATCCCAAAGAGCCCGAGTTACA CAGAATAGCCACTAGGAGATGATGGCAGGGGTACCAATGGGACTTCACTTTTGTATGGGG ATTTTTATTTTTTGCTCTTTTTTTATAGTATCAGGGAAGCAAACTGCCTTTTCCAAGTTA GAAAATGCTATGTGAATCTAGTTGAACCAGGGAATACGGAGTGAGCAATATGTAGCTTGA ATTACGTGTAAAAGTAGATTTAAAAAGAAAAGAAAAGAAAACAAGACAGAAAAGCGCTGG TTGTCCTTCATTGCAGTAACGGCAGGCCTGCAGAACTTTGTTGAGGCAGGAGGTAGTGTG TTTGTGCTATCTCAGAAGATGGGCATCGAACAATCAGTTTCGGGGTGTGACGGCGGGGAC AGTGGTGGACAGGTACCAAAGCTATTTTCTCATCTGTCCTGTGGACGAGTGGGGTTGTGG AGCCATTGATACTGCACCAGCCGCTCAGACAATCAACAGCACACACTGTTCAAGAAAGAG TCCATCACTTGTACTCGTGGGAGGAGCTTGTCCCATTATAATTCCTCTCCCCATTCCCTG TCACTTGGGGATGATTTCATCTGCGGGTCAGGCTTTCACCACACCACTTGTCTTTCTATT TATTACATAGACTAGAGGATTATGGGTAAAGGCAGGCAGAAGTTGCAGATGCTCGCCCCT TCGGGACTGTCTGAAGGACCTTTCTTTTCCTCCTGCCCCACCCCTCCCCCTTTAAAATAA TTTGACACTTTTTTCGTATCTATTTCAGAGTCCTATTTAAAACTATTTATTAGTGACTAC AGTACCTAAGACAGCAAGGTTCTTGACATTACAGTTCTCCGACAGTTGATGATCTTGTAC TTTATAATGTGCCTTAATAATAATCCTATTTAAGATATTTATTTTTAAGTTTTACTATGC TGCACTCTAAAGGAAGGAACTTTAGAAGTGACACTGTAAAATTATGTATTCATCTCATGG CATAAGTTATTCAGTAGGTCTAGATGTAGCATATTAAATATTAACCTATTCAACTAAAGA CGTTGGCTTTGGATTTATTTAAATTCATATGTGCACTGTTCGGGTGGGTACTCTTGCCTA AACATATTTGAGTTTATTTTAGTCTTGAGTTGTTTTACTTTTTTTTTTTTTTTAAACAAG CTACATCGCTGGTTCTGTGCTTCCTCAATTGCTTTCCCCCTGTGGATCTCATGTACCGGG GACTCATAGCATCCCCGCTTTCCTCGTGTAGTGTATGTAGTTTTAAAAGACGGCTTTATA TTTTTCCTTCTAAAAGTGAGATACTTGCAATTTTTACTCTTAAACTAAAATGAATACTAT TTTACACTGTATTGGACTTTTATACTTGAAGAACTTCCTACAATGGACAATTTTTATGGA CTCTCTCCATTGTCACTGGATTTAAGTATTCCTGTGCCGGGCAGTGGTCCGCAATGGAGG GCGTGGCTCTCCTGTGCAAATTATTTATTTGTTGTGTATTTCGCTTTATAATGTTTCAGA TCTTCTCATCTATTCACTTGTATTAAATATAATTTTT
	3' upstream sequence						AAAAACTGCTGTTGCATCAGTTATTTCTAATGCTGCCGGAATTAGTTTCTCCTTTTGAGA GAGGCTGACTGTACTCGCCACGTAGCTAAGGATAACCTTGATTTTTGATCCTCACACCTC CTGAGTGATGGAGGTACAGGCATGCAGCACCAAACCCAGGGTTTCCCAAACATGGGGCAA GCACTCTACCAACTGAGCTACGTTCCCAGCCCCCAGCTCCCAGCCCCCAGCCCCCAGCCC TTTTTCTTCTTAACTACTTTGGTTAACCATTCCTCAATGGAAAACTTGTTCTGTGGATGT AAAAATCTCTCAGAGGATGTACTCTTTGACCTCTAAAGTATATCTCCCTAGATACCCGCC TTATGTGTAGCAAATAGATCATCGCCCTAAACTGAATCCGGAAGGACCGTTTATACCACT GAGAATGGGTTAAAGCGGCCTCGGCCTAGGTCAGGACGGTGCTGCTGGCATTGGGGAAGA CAAGAGGCTGGAGCTAGCCTCCGTATTTCCTAGAAATATCAATAGATCCAAATGCTCTTG CTTATTGCTTTGTGATGCTAAGATTGAACCTGGGGCCTTAACCTTGCCTAGGCAAGTGCT CTACCACTGAACAATACTCCCACCCCGCTTTTTGACCTTCAACTGGATCTCTTGTATACC AGGGCAGACCTCAAAACTGCTATGAAAAAGAAAATGACCTTGAACCTATGGCCACCAATC TTTGACTCCTGAGTATTGGGATTACAGGCGTACACCACTACAGTTGATAGATGTGGTCCT AGGGGCTGAATCCAACAGAGGTCCATCCCCTGTCCTAGATGAGGCCTCACTGAAAAGCCC TGGCTAGCCATGAGCTCACCCTCTGGAGTAGCTTTAACTTGGGATCTTCCCACCTTAGCC TCCCTAGAGGTCAATATCACCAGGTCCCAAATTACATTTAGTAGCTAACCCCCTTTGTTG GTGATATTTCCAAACTTCTCATATAGTCTATTGGAACAGA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rbm24 (ENSMUSG00000038132)
Transcript ID	ENSMUST00000037923

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 237 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information