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Target CDS Information

Gene Symbol (Gene ID) Tmx4 (ENSMUSG00000034723)
Cross Reference
CCDS CCDS16784.1
EMBL AK030696, AK129301, AK147465, ...show all
Fantom 5530400J02, M5C1048C18
GO GO:0003756, GO:0005623, GO:0006457, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Tmx4-001
OTTP OTTMUSP00000016456
OTTT OTTMUST00000036670
protein_id AAH50918.1, AAH54558.1, AAI38169.1, ...show all
RefSeq_mRNA NM_029148.1
RefSeq_peptide NP_083424
UCSC uc008mnt.2
UniParc UPI00001C2805
Uniprot/SPTREMBL Q0P5W2
Uniprot/SWISSPROT Q8C0L0
Vega_transcript OTTMUST00000036670, Tmx4-001
Vega_translation 185256, OTTMUSP00000016456
Definition protein_id:ENSMUSP00000045154
translation:
MTGGFCVPVLLAAWLAAAAAEGLEQAALPAEESRVQPMTASNWTLVMEGEWMLKFYAPWC
PSCQQTDSEWETFAKNGETLQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRG
PGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGIP
AWCSYVFFVIATLVFGLFMGLILVVISECFCVPLPRASSERCEQEQSTGEAQGAEQLQDA
EEEKDDSNEEENKDSLVDDEEEKEDIGDEDEGEEDEEEDNLAGIMAEERSDTNERAVVKE
GSVSPKEDGAHPADTQDVVEDALRQRKSQNANKGS

Chromosome 2
Length
Position(start - end)
45479
134598525 - 134644005
Orient to Chromosome minus
Link Location : (2:134598525-134644005)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmx4 (ENSMUSG00000034723)
Transcript ID ENSMUST00000038228
Reports
substitution
cSNPs2
Insertion36
Deletion39
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num1
synonymous substitutions 134600029 (p.Arg216Arg),
non-synonymous substitutions 134598569 (p.Ala322Ser),
B6 transcript
(ENSMUST00000038228)
MTGGFCVPVLLAAWLAAAAAEGLEQAALPAEESRVQPMTASNWTLVMEGEWMLKFYAPWC
PSCQQTDSEWETFAKNGETLQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRG
PGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGIP
AWCSYVFFVIATLVFGLFMGLILVVISECFCVPLPRASSERCEQEQSTGEAQGAEQLQDA
EEEKDDSNEEENKDSLVDDEEEKEDIGDEDEGEEDEEEDNLAGIMAEERSDTNERAVVKE
GSVSPKEDGAHPADTQDVVEDALRQRKSQNANKGS*
MSMv4 transcript
MTGGFCVPVLLAAWLAAAAAEGLEQAALPAEESRVQPMTASNWTLVMEGEWMLKFYAPWC
PSCQQTDSEWETFAKNGETLQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRG
PGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGIP
AWCSYVFFVIATLVFGLFMGLILVVISECFCVPLPRASSERCEQEQSTGEAQGAEQLQDA
EEEKDDSNEEENKDSLVDDEEEKEDIGDEDEGEEDEEEDNLAGIMAEERSDTNERAVVKE
GSVSPKEDGAHPADTQDVVEDSLRQRKSQNANKGS*
homology99.70 (336 / 336)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmx4 (ENSMUSG00000034723)
Transcript ID ENSMUST00000038228
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCATGCTCTAAAGCCAGTTAATTCTAAGCATAAGCATTCCATTTATTCAC
CCCTTTCTCTGTTTCTGTCTCTGTCTCTGTGCTAAAAATGCTACAATGAAAACGATAGAC
TTTCTGTTTATGAATATTTTATAAGCACAGTAAAATACTTTCTACCAGCATTGTAGGCTC
AATGTGCACACTATAACGTTTTATCCAGACAACAAGACAACACCTCTGCATGCAAACTTG
ATCTTTTCTATATTACGGACTAGAGGCTGACCTTAAGTACTCTCAAGTACTCTGAATTGC
ATAGCTGTGTTTTATGCTAGGAACAGAAATCACATTTGTAGGTATATTAGCTGCACCACT
GAATTTTACAATTTAGACACCTAAATAAGCTCATGGGCCCTCCAATTGTGTTACACCAAG
GTGTGGTAGTTCCAGGGTACAGATTCGTCTAATGTGTATCTGTAAATCCACAGAAATCAT
GTATGACTCTGACAAAGTTGTAGCTGGAAGAAAAATGGTGTCCATTTCACTGCAAGTAGC
AATAGGAACAGATTCATTTTGTTAATACATGTGTTTTAAAAGTCTATAAAATTTTTTTAA
AAATTATTTTTTAAAAGGCTGCATTATCTAGATTTATCATTAATCTAGTTTTATCTGTTT
GGGCAAGGCTGCTCCAGTAGTGTGTGCATGCAGAGAGCTTTTTACTTGTCCTTCCCTTCA
GTCGCCATGGTCCACTCCACAATTCTTGGATATTTTTGTTAACATGAAATGGGGGATGGG
TTTATTTAGCCAATGGCCACGTTTCCCTTTAGAGAAACAGCAAGCAGTCGGTAAAACAGC
ATTGGGTCATTTGTATATTTTCAGCCAGACAGTCAGCAGGAAGAGCAGGCTGTTGCCTTG
GGAAACTGCAGACGGTTGCTTTGGCAACCGCCTTCCCACAGTGCGTTGGGGGCGTGGTCA
GGGTGGCTGGGCGTGGCCTTGCCGGGCGGGCAGATAAGAGGCTGAGGGAG
1 EXON 1 134643842 134644145 - 2 304
GCGCGGCAGGCGTGGCTGGGAGCACGGCGCAGAGGCGGGTTGGCCTCTCCTCAGACCTCT
GTGAAGGCGGTTGCTTGGGGTGAGAAGCCCAGCCACTGCTCCCCGCCCTCAGAGAGCTGA
GCTACCTCACAAGCGCCACCATGACAGGCGGCTTCTGCGTCCCGGTACTCCTGGCCGCCT
GGCTCGCAGCGGCAGCGGCCGAGGGTCTCGAGCAGGCCGCGCTGCCGGCCGAGGAGAGCC
GTGTGCAGCCCATGACCGCCTCCAACTGGACGCTGGTGATGGAGGGCGAGTGGATGCTGA
AATT
INTRON 1 - 2 134639838 134643841 4004
GTGAGTGTCCCCACCCACCCCGCAC..........TTGATTAGTTCTTCTGGTTTTACAG
2 EXON 2 134639722 134639837 2 1 116
TTATGCTCCATGGTGTCCATCCTGCCAGCAGACTGATTCTGAATGGGAGACTTTTGCAAA
GAATGGAGAAACACTTCAGATCAGTGTGGGAAAGGTGGATGTCATTCAAGAGCCAG
INTRON 2 - 3 134621434 134639721 18288
GTACTGCAAATGTGGTCTATAGATG..........CTGTTTTTGTTTATGTTTTTCCTAG
3 EXON 3 134621388 134621433 1 2 46
GTTTGAGTGGCCGCTTCTTTGTCACCACTCTCCCAGCATTTTTTCA
INTRON 3 - 4 134620684 134621387 704
GTAAGTTTTATTAAGTTTATTATCT..........TTCTGCTTAATTTTATAATTTATAG
4 EXON 4 134620555 134620683 2 2 129
TGCAAAAGATGGGATATTCCGCCGTTACCGTGGTCCAGGAATCTATGAAGATTTACAGAA
TTACATATTAGAGAAGAAATGGCAATCAGTTGAGCCTCTCACTGGCTGGAAGTCCCCAGC
CTCTCTAAC
INTRON 4 - 5 134609577 134620554 10978
GTAAGTTATCAGTAGGTCTCATGTT..........CAGGGTTCTTCTCTTTCTTTTGTAG
5 EXON 5 134609531 134609576 2 0 46
GATGTCTGGAATGGCTGGTCTTTTTAGCATCTCTGGCAAGATTTGG
INTRON 5 - 6 134600990 134609530 8541
GTGAGTACTTATAAACAATTATATT..........CATTTCATTTCTCATTTGATTGCAG
6 EXON 6 134600888 134600989 0 0 102
CACCTTCACAACTATTTCACAGTGACCCTTGGAATTCCTGCATGGTGTTCTTACGTTTTT
TTCGTCATTGCCACATTGGTGTTTGGCCTGTTCATGGGTCTG
INTRON 6 - 7 134600074 134600887 814
GTAAGACATTGCCAGTCTTTTTTTT..........GTGAAATTAACTTTGTTTCTTCCAG
7 EXON 7 134600010 134600073 0 1 64
ATCCTGGTGGTGATTTCAGAATGTTTCTGTGTGCCTCTTCCAAGGGCTTCCTCTGAACGC
TGTG
INTRON 7 - 8 134598866 134600009 1144
GTAAGTCCGAGAAGTTCTCATGGGT..........TTTGTTTTTTCTTTTCCTTCCATAG
8 EXON 8 134594185 134598865 1 - 4681
AGCAGGAGCAGAGTACTGGAGAGGCTCAAGGAGCTGAGCAGCTACAGGATGCAGAGGAAG
AAAAGGATGACTCAAATGAAGAAGAAAACAAAGACAGTCTTGTGGATGATGAGGAAGAGA
AAGAGGACATTGGAGATGAGGATGAAGGAGAAGAAGATGAGGAAGAGGACAACTTGGCAG
GCATCATGGCTGAGGAGAGAAGTGACACCAACGAGCGAGCAGTTGTGAAGGAGGGTAGTG
TGTCCCCAAAGGAGGACGGAGCTCACCCAGCTGACACTCAGGACGTGGTGGAAGACTCCC
TGAGGCAGCGCAAGAGTCAGAATGCCAACAAGGGATCTTAGGTTACATTATGACATTTCT
AAAAATACAGGCCAAAAAAGAAGTCTGTTTCCCTCTGGTCTGCAGTTTAAGCCAAATCCT
TAGTTGTTTGTTTTGTTTTTCTGAATGAGCAGTGTTCACTTTTAGAAGATGATCTCTGGC
CCTGTGGTTACATGGTAGTAAGCCTCAGTGTCGTAAGAGAGGTGTAGCACTTAGCCATCA
TAGTGTTAGTAACTTTGTGGGGTCTTGAAGAGAACAAGTTGATGTGCTTGGGAGCCAAAG
AGTAAATCAGAGGACTTCTCTGCAGTTCTCATTAGCACCTTTAGAAGTGAGGCTGCTGCT
TAATAAAGTGAGAGCAAAACCAGAGCATCCTTGAAGTACAGGAAGTCTTTGCCTTTGTTG
TTAAGCATGTGTTTTAGTCAGGTCAGAAACATCAGGTACCACAGCTCCCCAGCACTCTCT
TGAGGCTAGAAATTGTGGAGACCGGGGTATAGATAGAACTTCAGCATGGAGCTAGGGAGT
CATCTGAGCTCTTTTGGTCTCTCGTCTTTTGTTTCTTACCTTTCATCTCTATGACTTTTC
CACCTTGCACTTGCAGACTCCCATGGTTCACAGCTGCTCTGTAGTGAGAAGAGCAGGCAG
CAGTGATCTGCATGGATTACCCTTACTGGATGTAAAACTTGAGGGAACCACAGTTGAGAA
GGCTAAGACTGCCAAGTGTCTCAAAGACATATGCTGTACTCTCTGAAAATTCAAAAGGCA
GTGGCAGTTTCATAGGACAGGTACAAGCAACATCTTGTTTGGGTCCTATAGTTACAGGAT
AACTTCTTCAAGAGTTTCTTCAGCCACATCCTTTGTTTTTCTGAACCCAGAGTGCTCTAA
GCCTTGTCACTGTAAGGTATTTTTATAAAGCTGACTTCAGGTCTGTGGTGGTTAGTTTCC
ATCTCAAGAAACCTCTCTGGAACCACTTTAATAACAACTGAAAAGGCATGTTAGCTTTGC
TTTTAGTGATGTGCTTTTGGTGAAAAAACAAATTGATGAAAGTCAATTTCAGTAGGTAAA
AGATTTTATTTGTTTCTATCTCCCTTGATCCTCTGGAGAATTGTGTGATTATAAATCTCT
CCCTGCTCAATCCAATATCAGTATCAAGGAACCCAGATTCCTTATTAAATAAAAAAAAAT
CTCTATCTCCTCTCTTACCCTCTCAAGTCTGAGAATAAATCCATAAAATTAGATTCTAGC
TATATGAAGGATGACTAAATTCAATCTTATTCCCCCTTGGGTTGAGTCAGAATAATGAGT
ACAGGTTTGTGAAACTCAAAATGTTTCATCATTTTAAAAAGGGGTATGTAGTATATTTCT
CTGGCTGCTTAGATAACGTTTTCTTTGCATTAGCTGCCAACAGGAGGGTCATTGTTAGTG
GAGGTTCAGAATCTGCCTTCCTGTACTGCACAAGGCTGCTACAAACCTTGCACAAAGAAA
GATTTTATTGTGACAATCCATTCTTTATGAATGTTTTTATTTCATCTTTGTAACTTAGTT
AACTGTCAGTTCAAGGCTGAGGCCATCACAGAACTGGAGACCTTACTGCCCTTCCATGTT
TCTGCCCTTCTGATACATCCTTACTCAAAAGTGTCATGGTTCTGTGGTACTTTTCATCTT
CCTAATAGAGCTGAGCTGCACCTTCTCTTCTGCCAGTATATTTCCTTCCTTCCTTCCCTT
GTAATCCTTCCTTGATGCATGGAGTGTTTAAGCAATAGTAAATCCAAGTTCAGAGTGGTG
GGAAAGGGACGACTTGCATCTCTGTTCTGTGAAGTACCCTCCTCCAAATGGACATACTGG
GTTTTAATGGGATATTTGACAAGAGGGAAAGCTTGAAGGATTACAGTCTGCCTTGGCTTT
GATAAATGTTTTAAAACCAGGTTCCATTTGGACCACAAATACTACCTAATAATATAATAA
GATAATATATTTCCTTTCTTTTTTTTTTTTTTTTCCTGAGATAGGGTTTCTCTGTGTAGC
CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCTGCCT
GCCTCTGCCACCCAGGGGCTGGGATTAAAGCCGTGCACCACCACCACCACCCGCATTATA
TTTCCTTTCTTAATACTTAAAAGATATTGGAAGCTGGAAGAAAAAGTCATGGAGAAGGGG
GTCTAGTCCACTAAAATTATATTTATTTGTAGGAATCATTTTTTTTCCTGGCTTTTCTGT
TTTTAACATCCTGGCAAAAATTGGGTTTCTAGTAAATAGTCCAGGACCTTAATTTCTTTC
CATATGAAGCCTTAAGGTTTATTTTCAATACTTTGTTCATATAAAATTAAAGGAAAAAAC
AACTTAAGATTAGATAAACATTTAATACATTTTTGTGTACATAATAAATTTAATCCAGAA
GTGAAGTGCATGAAAATGTGATTTTCTAAAACAAAAACCATGCTTCCCTTCCATTGCCAT
ACCTGCTATTTAATTGTAGATTGCTATTTTCTGGATGTTAAAATCTGGTGAATGAGATAG
CAATTGTGGAATGAGGGTGTATAGTGCTTTATGCACAGATGGATAGAGAAAGGTGCCTTG
TTCTTCATTGGAATATCTGAAAATTCCATTACCTCTTTTTATTTTTTTCTTAACCCTTCA
CCTCCTTAACCATGCTGAACCACACTGACTTGCTTAGAATCTCATGGGAGCGATGCACAG
GCAGTTCACTTTTCTGTTGTTGTTATTGTTTGGTTTTGAAGGCTAATCATGGAACATGGA
AGAGATGTCTCATTCACTACATAGGCCATTGTGCTGTGTGGCAGTCACTGCGGTCTCATC
CTGTCCATAGGATCTGTACCTGTTATTTATAATAACTAGTGCAATGGAAGGCAAACAAGC
TTGACACAGATCAGCTTTGGACAGCTGAAAAGCTACACTCTGACCTTTTAGGGTCAACTC
CTGGCTGATAATTAAGATATTGCCATGTGGTTTGAGTATATGTAAGCTTGAATAAGTGCA
CTGTGTAACATCTTTTGGGGAGGAGATTAAAATGCTAGTTAAGGGAATATCTGCCATGTG
GCTTTTGCGAGTTTGGAAACAATGGAGGTCAAAGGGAAGTTTTAAAGAATTGTAAAGGGT
GAAAGATATTTCAGCATTAAAATCCTAAGCATGAAGTGAGGGAAAGAGAGAGAGAATGGA
GCTTTTGCTGGTGTGTACAGGTTTTCTGTGTTCTTCCTCTTAGTGTCCTGCTGTTATTCC
TGCCAGTATTGTACATTTGTGATTGACTAGCCTGTCAAATCATTCAACTGTTTGGAAAGT
ATTTGTGTAAATCTTTGTGCCAACAAGAACGCTCTCAGTGTTGTGTCTCTTTACCTCATT
GACTTGATCCTTGTGAGATTGTAGCTTCTGACAGAAGCCAAGGTGGAGTCTCATGAAACC
TGCTAGGTCAGTTCTTTGAGCAGCTACCCAAAGCAGGAGACTCAACTGAGAAACCTTGGA
CAGCTTCAGCCTAGCATGTTGACCTCAGAGGCTTATTCTCTAAAGTTTCGTGTAGACTGT
GATGTTCACCTGTGGCTTTGACTCATTTCTAATGTGGTTTAATTTTATTTGTCTTTGGAA
AGCTTTGTAGAAATGCAATTTTTATACTAATGACACTGTTCATTTGTGAGTCAGTATATT
ATAAAATGGTGTGTTTTTTTGTAATAGTTTTGATTGTTTAGCCCAGTGTATTTATTTTCC
ATTACCTATGTATTCTGTGCTCTCAAATAGATGTGTAGCAATTGAAATGAGAAATCAGTT
CATCATTTCAAGTACTACATTGCCTGCATTACAAATTCTCTGATCACAGAATTGTACATA
ACCCTGAGCCTATGTACTGCCATTTGATTGTCAGGTTCCATTTGTGTCAAAACCTAAAGA
TAGTGATGACCAAGTGAAACAGAGTGGTGTATTGCTTTTTCATATGAATATTTTCACATA
AAAGCATTTGTGAAAGCAGTTGAAAATATTACTTTGTTAAAAAAAGAATTTTCTTCTGTG
TTTATTCTCTGAGTGTTCATTCTCCACTTTTTGTACTTGGACTTGGTAAAATCCATGCAG
TGTGCCCAAGGTTAATGCAAGGGTTTCTGAACACCACAGCCCATTGTCCTGTCTGTATGA
GCTCACTGCAGTTGCCCTGGTCAGGCTCGTGCATTTACTTAGTGACTTTGCTACTTCTCC
AAGATTGCTGGCCTTCCACAGTCTCCTACGACTTAGAGAAGACTATCTCAACTTACCTGT
TCCCACCTCTGTAGCAATAAAAGAGCCAAAAAGGCAAGGTGGCTCCTTTGAACACACTTC
A
3' upstream sequence
CACTGATGTAATGGAGATTTGATTTATTCCTTTTGAAAGATAGTAGTAAGCTGTTTGGTA
AAAGAAAAAATGCTATTAAGTTCAATTTTACCCAGTTTCTTTACCAAAGTAGAGGTAAGA
ATTCTGTCTGTGTGAATGACTCTTGGTGAAAATTCTTCACTAATCTACCTCTCAGGTAAG
TTAGTATAGTCTCTAAGTATAGTAAGTGGGATTCTCTTTAATCCTGCTAATTTAACATTA
GTTGCCCTTTGGAAAATCTTTTGCCATTAGAATGTAGAGTGTTTTAGTGTCACTGGTGGG
GCCCTTTCCTGGAATTAAATGGTAGAGACCATATGATAGATGCAGAAAATATCAGTGGTG
CAAAAGAACAAACTGTCAGGCTCATGAAGTTATAAATCATTGAAACAGTGACTGCCTTTT
TAGCCCATGCTCTCTGCACATGTCTCAGGCACATAAGAGATTACAGGTTGGCTGCTTGAT
TATTTTGACTAATAGCAATATTGTATAGTGTATTTTGTTTCTCATATCCTTAACATCTTT
GTCAAATAAGGTGCCAAGCCAGCTGATCTGCAGACTCTTCTATTTACTGGAAAAGTAGTT
GTCACTTGTCTCTTTTTAAATAGTTTACTTTGTATTTGGGGTTTTGTGTTTTGAAGCAAG
GTCACGATAAGTGTCCCAGCTAGCCTTAGATTTACAACTCTCCAGACTTAGAATTTCCTA
GGAGTGCTGTGATACATGGCATGCACTTCTCTGACTAGGAGCTGTATTTTCAAGTAGCAT
AAAGTAGAATGATTAAAAACCAAGTTTCTATTGTCTATTAACCTTTGTTTTAAAACTGTA
GATCTATTCTTATGAGTTAGCAGGAAGATAAGTCCCTTGCCAAGTAAGGTCAATTCAAAT
AATAGCCTCAAGAAACCATCTACAACTGTGAGAGCTGGGAGAATGACCACATTTATAAAA
TGAGGACAATAATTCAGGGTTTGACAACAAGTCAGAGTTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Tmx4 (ENSMUSG00000034723)
Transcript ID ENSMUST00000038228
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 336 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information