MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Palm3 (ENSMUSG00000047986)

Cross Reference

CCDS	CCDS40405.1
EMBL	AK014493, EF208034
Fantom	4432412L15
GO	GO:0001960, GO:0001960, GO:0003674, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Palm3-001
OTTP	OTTMUSP00000043788
OTTT	OTTMUST00000081772
protein_id	ABM92364.1, BAB29393.3
RefSeq_mRNA	NM_028877.1

RefSeq_peptide	NP_083153
UCSC	uc009mlq.1
UniParc	UPI0000428FA7
Uniprot/SWISSPROT	A2TJV2
Vega_transcript	OTTMUST00000081772, Palm3-001
Vega_translation	204068, OTTMUSP00000043788

Definition

protein_id:ENSMUSP00000051396
translation:

MALQTPVLSPATPTVMAESALYRQRLEVIAEKRRLQEEIGAARRELEEEKLRVERLKRKS
LRERWLMDGAAEGPERPEEPASKDPQSPEGQAQARIRNLEDSLFSLQSQLQLLQSASTGA
QHRPAGRPAWRREGPRPLSQSAMEAAPTAPTDVDKRTSLPDAPVGMSPESPSDPREESIA
VLPASRPSTEAIGTSSEANGPCPGHSPLPEQLSLGVSSVTKAKGDGAVEVVWAGLRATEN
SATGPTDVELEAKVEEVVLEAIGARQGTSSPELPTWVKEGRGVVEVVWEGLGGRDLDVTG
ESGRDAEATHTSSRRLQEQFEAETCRKEEGASRDSLEGVGQGGPGVEEGSFIWVERVALS
EDWEEILMEGLEAPQGAGSAGEPEALIGAQPRGGEASWEVEKREVEKVEGIEEKGRAEKL
GAEREDGVAVLPDETQGREENEAEKVERKDSEGPFPAEIATDEEKWEVKTTEGEESLEVE
KGGEAEPVTTEKPLVTEKKPEGSLETERKGSEMPLDQEKDGEGSLDRESKTTEILLDGEI
GDKSSLDETKGSKKLLDEKTGGEGSLDEEAEGSKKLLDREADGIEPFSEVDKTSGAKDDV
SPEEQGKANEGAEFQAEDASPPGATVCVQDEPRSEEQGQQEPEKQEGLVEGAASKPEPCT
EREGPPGDATLLLAETPAPEQPVESQPLLHQEASSTNPGDHPAPTYAPAQQLELAEAKEA
SGPKQKTCQCCVVM

Chromosome

Length
Position(start - end)

8576
84021488 - 84030065

Orient to Chromosome

plus

Link

Location : (8:84021488-84030065)
/

Detail Map

name	Palm3 (ENSMUSG00000047986)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Palm3 note : paralemmin 3 [Source:MGI Symbol;Acc:MGI:1921587]

name	Il27ra (ENSMUSG00000005465)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Il27ra note : interleukin 27 receptor, alpha [Source:MGI Symbol;Acc:MGI:1355318]

name	Palm3 (ENSMUSG00000047986)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000055077

name	Il27ra (ENSMUSG00000005465)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000005601

name	Palm3 (ENSMUSG00000047986) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS40405.1 Uniprot/SWISSPROT:A2TJV2 RefSeq_peptide:NP_083153 RefSeq_mRNA:NM_028877.1 Vega_transcript:OTTMUST00000081772 Vega_transcript:Palm3-001 UCSC:uc009mlq.1 Fantom:4432412L15 EMBL:AK014493 EMBL:EF208034 GO:GO:0001960 GO:GO:0001960 GO:GO:0003674 GO:GO:0005515 GO:GO:0005524 GO:GO:0005575 GO:GO:0005737 GO:GO:0005886 GO:GO:0008063 GO:GO:0008063 GO:GO:0032496 GO:GO:0032496 MGI_trans_name:Palm3-001 Vega_translation:204068 Vega_translation:OTTMUSP00000043788 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005886 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0043167 protein_id:ABM92364.1 protein_id:BAB29393.3 OTTP:OTTMUSP00000043788 OTTT:OTTMUST00000081772 UniParc:UPI0000428FA7
definition	note : transcript_id=ENSMUST00000055077 protein_id : ENSMUSP00000051396 translation : MALQTPVLSPATPTVMAESALYRQRLEVIAEKRRLQEEIGAARRELEEEKLRVERLKRKSLRERWLMDGAAEGPERPEEPASKDPQSPEGQAQARIRNLEDSLFSLQSQLQLLQSASTGAQHRPAGRPAWRREGPRPLSQSAMEAAPTAPTDVDKRTSLPDAPVGMSPESPSDPREESIAVLPASRPSTEAIGTSSEANGPCPGHSPLPEQLSLGVSSVTKAKGDGAVEVVWAGLRATENSATGPTDVELEAKVEEVVLEAIGARQGTSSPELPTWVKEGRGVVEVVWEGLGGRDLDVTGESGRDAEATHTSSRRLQEQFEAETCRKEEGASRDSLEGVGQGGPGVEEGSFIWVERVALSEDWEEILMEGLEAPQGAGSAGEPEALIGAQPRGGEASWEVEKREVEKVEGIEEKGRAEKLGAEREDGVAVLPDETQGREENEAEKVERKDSEGPFPAEIATDEEKWEVKTTEGEESLEVEKGGEAEPVTTEKPLVTEKKPEGSLETERKGSEMPLDQEKDGEGSLDRESKTTEILLDGEIGDKSSLDETKGSKKLLDEKTGGEGSLDEEAEGSKKLLDREADGIEPFSEVDKTSGAKDDVSPEEQGKANEGAEFQAEDASPPGATVCVQDEPRSEEQGQQEPEKQEGLVEGAASKPEPCTEREGPPGDATLLLAETPAPEQPVESQPLLHQEASSTNPGDHPAPTYAPAQQLELAEAKEASGPKQKTCQCCVVM

name	Il27ra (ENSMUSG00000005465) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS22465.1 Uniprot/SWISSPROT:O70394 RefSeq_peptide:NP_057880 RefSeq_mRNA:NM_016671.3 UCSC:uc009mlr.2 EMBL:AC156028 EMBL:AF053005 EMBL:AF265243 EMBL:BC032878 GO:GO:0002827 GO:GO:0002829 GO:GO:0005515 GO:GO:0016021 GO:GO:0032729 GO:GO:0045509 GO:GO:0048302 GO:GO:0050830 GO:GO:0070106 MGI_trans_name:Il27ra-201 goslim_goa:GO:0003674 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 protein_id:AAC40121.1 protein_id:AAG27298.1 protein_id:AAH32878.1 UniParc:UPI0000020EB3
definition	note : transcript_id=ENSMUST00000005601 protein_id : ENSMUSP00000005601 translation : MNRLRVARLTPLELLLSLMSLLLGTRPHGSPGPLQCYSVGPLGILNCSWEPLGDLETPPVLYHQSQKYHPNRVWEVKVPSKQSWVTIPREQFTMADKLLIWGTQKGRPLWSSVSVNLETQMKPDTPQIFSQVDISEEATLEATVQWAPPVWPPQKVLICQFRYKECQAETWTRLEPQLKTDGLTPVEMQNLEPGTCYQVSGRCQVENGYPWGEWSSPLSFQTPFLDPEDVWVSGTVCETSGKRAALLVWKDPRPCVQVTYTVWFGAGDITTTQEEVPCCKSPVPAWMEWAVVSPGNSTSWVPPTNLSLVCLAPESAPCDVGVSSADGSPGIKVTWKQGTRKPLEYVVDWAQDGDSLDKLNWTRLPPGNLSTLLPGEFKGGVPYRITVTAVYSGGLAAAPSVWGFREELVPLAGPAVWRLPDDPPGTPVVAWGEVPRHQLRGQATHYTFCIQSRGLSTVCRNVSSQTQTATLPNLHLGSFKLWVTVSTVAGQGPPGPNLSLHLPDNRIRWKALPWFLSLWGLLLMGCGLSLASTRCLQARCLHWRHKLLPQWIWERVPDPANSNSGQPYIKEVSLPQPPKDGPILEVEEVELQPVVESPKASAPIYSGYEKHFLPTPEELGLLV

name
type	STS
link
xref	UniSTS_NUM:162339 UniSTS:RH125523
definition	note : map_weight=1 standard_name : RH125523

name
type	misc_feature
link
xref
definition	note : contig AC156028.2 39328..212724(1)

name	Palm3 (ENSMUSG00000047986)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081773 Vega_transcript:OTTMUST00000081773 UCSC:uc012ggy.1 MGI_trans_name:Palm3-002 OTTT:OTTMUST00000081773
definition	note : retained_intron note : transcript_id=ENSMUST00000142367

name	Palm3 (ENSMUSG00000047986)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081774 Vega_transcript:OTTMUST00000081774 MGI_trans_name:Palm3-003 OTTT:OTTMUST00000081774
definition	note : retained_intron note : transcript_id=ENSMUST00000154171

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Palm3 (ENSMUSG00000047986)
Transcript ID	ENSMUST00000055077

Reports
substitution
cSNPs	1
Insertion	1
Deletion	2
SNPs	-1kb 5'UTR CDS 84029535(c.1675A>G), 3'UTR INTRON +1kb
Insertions	-1kb 5'UTR CDS 3'UTR INTRON 84022194 (c.41+676dupC), +1kb
Deletions	-1kb 5'UTR CDS 3'UTR INTRON 84022497 (c.41+1000_41+1001delTG), 84025753 (c.91-440_91-438delACC), +1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	1
synonymous substitutions
non-synonymous substitutions	84029535 (p.Lys559Glu),
B6 transcript (ENSMUST00000055077)	MALQTPVLSPATPTVMAESALYRQRLEVIAEKRRLQEEIGAARRELEEEKLRVERLKRKS LRERWLMDGAAEGPERPEEPASKDPQSPEGQAQARIRNLEDSLFSLQSQLQLLQSASTGA QHRPAGRPAWRREGPRPLSQSAMEAAPTAPTDVDKRTSLPDAPVGMSPESPSDPREESIA VLPASRPSTEAIGTSSEANGPCPGHSPLPEQLSLGVSSVTKAKGDGAVEVVWAGLRATEN SATGPTDVELEAKVEEVVLEAIGARQGTSSPELPTWVKEGRGVVEVVWEGLGGRDLDVTG ESGRDAEATHTSSRRLQEQFEAETCRKEEGASRDSLEGVGQGGPGVEEGSFIWVERVALS EDWEEILMEGLEAPQGAGSAGEPEALIGAQPRGGEASWEVEKREVEKVEGIEEKGRAEKL GAEREDGVAVLPDETQGREENEAEKVERKDSEGPFPAEIATDEEKWEVKTTEGEESLEVE KGGEAEPVTTEKPLVTEKKPEGSLETERKGSEMPLDQEKDGEGSLDRESKTTEILLDGEI GDKSSLDETKGSKKLLDEKTGGEGSLDEEAEGSKKLLDREADGIEPFSEVDKTSGAKDDV SPEEQGKANEGAEFQAEDASPPGATVCVQDEPRSEEQGQQEPEKQEGLVEGAASKPEPCT EREGPPGDATLLLAETPAPEQPVESQPLLHQEASSTNPGDHPAPTYAPAQQLELAEAKEA SGPKQKTCQCCVVM*
MSMv4 transcript	MALQTPVLSPATPTVMAESALYRQRLEVIAEKRRLQEEIGAARRELEEEKLRVERLKRKS LRERWLMDGAAEGPERPEEPASKDPQSPEGQAQARIRNLEDSLFSLQSQLQLLQSASTGA QHRPAGRPAWRREGPRPLSQSAMEAAPTAPTDVDKRTSLPDAPVGMSPESPSDPREESIA VLPASRPSTEAIGTSSEANGPCPGHSPLPEQLSLGVSSVTKAKGDGAVEVVWAGLRATEN SATGPTDVELEAKVEEVVLEAIGARQGTSSPELPTWVKEGRGVVEVVWEGLGGRDLDVTG ESGRDAEATHTSSRRLQEQFEAETCRKEEGASRDSLEGVGQGGPGVEEGSFIWVERVALS EDWEEILMEGLEAPQGAGSAGEPEALIGAQPRGGEASWEVEKREVEKVEGIEEKGRAEKL GAEREDGVAVLPDETQGREENEAEKVERKDSEGPFPAEIATDEEKWEVKTTEGEESLEVE KGGEAEPVTTEKPLVTEKKPEGSLETERKGSEMPLDQEKDGEGSLDRESKTTEILLDGEI GDKSSLDETKGSKKLLDEETGGEGSLDEEAEGSKKLLDREADGIEPFSEVDKTSGAKDDV SPEEQGKANEGAEFQAEDASPPGATVCVQDEPRSEEQGQQEPEKQEGLVEGAASKPEPCT EREGPPGDATLLLAETPAPEQPVESQPLLHQEASSTNPGDHPAPTYAPAQQLELAEAKEA SGPKQKTCQCCVVM*
homology	99.86 (735 / 735)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Palm3 (ENSMUSG00000047986)
Transcript ID	ENSMUST00000055077


..........GAAATCCACCTACCTCTGCCTCCTAAGTGCTGGGATCAAAGGCATGCGCC
ACCACCGCCAGGCAAATCTTTAGATTCTTAAGAGTCTGTACTAGACTGTGGAACATAGGC
CATTCCAGCCCTTGAGGACAGCCCCAATCCAGTATGGTGGAGCCTGTGCTTCCAGGAGAG
ACACTCAACTTTACGTGCCAAAAGTGGCCCATGGAGCCCTGAAGCGGTCAGGAGAGGAGA
GGCCTAGATGTGGGTAAGTTTACCACTCGGTGTGGTGGGGGAAGGGGTCCTTGCTCAGAG
CAAGGTCCTCTGAAGCACCTAGCTGAGACAGACAAGGGCTGATCTCTTTCAAGACAAAGA
TCAAACCTGGTCTGGTTGTGGAGGTCTGTAATGACAGAGTTCAAAGGAAAGACATCCTCG
GTAGTGAATTGGAGGCCATTTCCCTATCGTTTATTTCTACCCCCACCCTTAAACATTAAA
TAGCACAACAGGGTCTTCTGACCTGCAGGCCAATTGAAGTTATTCTCCCATTTCCCAGCG
GGGCAAACTGAAGCCTTGAAACCTGAGGCAAATTGTCCACAGTGACCCACATCCTGGGCT
TCTTGGTTGCCATGGTCTCCGAAAGCCGGGTCAGAGAGCTCTCCCTACAGCATGCTCCAA
GGTCCTAGAAGGGAGAGCCAATGACTCTGGGCTTTTAGTAAAACTTTCCTGTGTGAGTGC
CCAACGCAGGCGCGTGTTCCCCAGCGGCCGCGGGTCAGTGCTTGGCTGCTGTCCCCCACC
TGCTGGAGCACCGGCGTGGCTGCGTGTATATGAACTGGGAGGCAGCCTAGCGCAGCGTGG
AGGCCGGAGGCTGGTAAATAATTCATCCTGAGAAGTTGATAGCGCTCCCCAGCACTGCCC
CAGCCCCAACCGGGCCGCGCCTCCCGCCCAAACCAGCTGGACCTGCTCTCCTGCTCCGCC
CCACAGCCCCCTCCCATCAACCAAGGCCCAGTCTGGGGCCTTTGGCTCAC
ACCTCTGCTGGGCAGTGATGGCTCTGCAGACCCCGGTGTTGTCTCCGGCCACACCCAC
GTAAGTGTCTGGGGTGGGGGCGGGA..........CTGAGCCCATGTGCTCTCCTTCCAG
GGTCATGGCGGAGAGCGCCCTCTATCGGCAGCGGCTGGAGGTCATCGCT
GTAAGTGTTACACTCCCAGAGCCCT..........GCAGCTCTGGGTCGTGTGTGCGCAG
GAGAAGCGGCGGCTGCAGGAGGAGATCGGCGCCGCGCGTCGCGAGCTGGAGGAGGAGAAACTCCGCGTGGAGCGGCTCAAG
GTTGGGGGCTCCTATCCAGTCCGGG..........TCCCGGACTCTCGTTCCATACCCAG
AGGAAATCTCTCCGAGAACGTTGGCTCATGGACGGGGCAGCTGAAGGGCCAGAACGGCCGGAGGAACCCGCCTCCAAGGACCCACAGTCGCCTGAGGGACAGGCCCAGGCTCGAATTCGCAACCTGGAAGACAGTTTGTTTTC
GTGAGTTGAGAATCCCTGATTTTGA..........TCCAGCAGCCTCCTTTCTCCCTCAG
ACTCCAGTCACAGCTACAGCTGTTGCAAAGTGCGTCCACAGGTGCTCAACACAGACCTGCTGGTAGGCCCGCCTGGCGCAGAGAG
GTGAGCAGGGCCTGAAAGAGGTGGA..........GACCTTGTCTCTATTCTCCTTGCAG
GGTCCCCGTCCTCTCTCTCAGTCTGCCATGGAAGCAGCTCCTACCG
GTAAGCATTGGAGTCCCCAAGACCT..........TCCCGTCCTCCCTTGATTCCCCCAG
CCCCGACTGATGTGGACAAGCGAACTTCCCTGCCAGATGCTCCAGTGGGCATGTCCCCTGAGTCTCCTTCTGATCCCAGGGAGGAGTCGATTGCGGTTCTACCAGCCTCGAGGCCATCCACTGAAGCTATAGGGACATCTTCAGAAGCCAATGGCCCCTGCCCTGGGCACAGCCCTCTCCCAGAGCAGCTGAGTCTAGGGGTGTCGAGTGTCACTAAGGCCAAAGGAGATGGTGCAGTGGAGGTGGTTTGGGCTGGGCTTAGAGCCACTGAGAACAGTGCCACAGGCCCCACAGATGTGGAGCTGGAGGCTAAGGTGGAAGAAGTGGTTCTGGAGGCCATTGGGGCCAGGCAGGGCACCAGCAGCCCTGAGCTCCCCACTTGGGTGAAGGAGGGCAGGGGTGTAGTGGAAGTGGTCTGGGAGGGGCTGGGAGGCAGGGATCTTGATGTCACAGGGGAGTCAGGCAGGGATGCAGAGGCCACACACACCAGTTCCAGGAGACTCCAGGAGCAATTTGAGGCTGAAACTTGCAGAAAAGAAGAAGGTGCTTCCAGAGATAGTCTTGAGGGTGTTGGGCAGGGAGGTCCTGGAGTAGAGGAGGGATCCTTCATTTGGGTGGAGAGAGTGGCCCTCAGCGAAGACTGGGAGGAGATTTTGATGGAGGGTTTGGAAGCACCGCAGGGGGCAGGGTCTGCAGGAGAACCTGAGGCTTTGATTGGAGCACAGCCCAGAGGAGGTGAAGCGTCCTGGGAGGTAGAGAAGAGAGAAGTAGAGAAAGTTGAGGGCATAGAAGAGAAGGGAAGGGCAGAAAAGCTCGGGGCAGAGAGGGAGGATGGTGTAGCTGTGCTGCCAGATGAGACCCAGGGAAGAGAGGAAAACGAGGCAGAAAAGGTAGAGAGAAAAGACAGTGAGGGCCCCTTTCCAGCAGAGATAGCAACAGATGAGGAAAAGTGGGAGGTGAAAACGACGGAAGGTGAAGAGTCGTTGGAAGTAGAAAAGGGAGGTGAGGCAGAGCCGGTCACCACTGAGAAGCCATTGGTGACAGAAAAAAAGCCAGAGGGCTCACTGGAGACAGAGAGAAAAGGAAGTGAGATGCCATTGGACCAGGAGAAAGATGGTGAGGGCTCATTGGACAGAGAATCAAAAACAACTGAGATACTATTGGATGGAGAGATAGGAGATAAGAGCTCATTGGATGAAACTAAAGGAAGCAAGAAACTATTAGATGAGGAGACAGGAGGTGAGGGCTCATTGGATGAAGAAGCTGAAGGAAGTAAGAAACTATTGGACAGGGAGGCAGATGGCATCGAGCCATTCTCTGAGGTGGACAAGACCTCAGGCGCCAAGGATGATGTGAGTCCAGAAGAGCAAGGCAAAGCCAACGAAGGAGCAGAGTTCCAGGCGGAGGATGCCAGCCCACCAGGAGCCACTGTTTGTGTCCAGGACGAGCCCAGGTCAGAGGAGCAAGGACAGCAAGAACCAGAGAAGCAAGAAGGCCTGGTAGAAGGGGCAGCCAGTAAGCCTGAGCCCTGTACTGAGCGAGAGGGTCCCCCAGGGGATGCTACCCTGCTCCTAGCTGAGACCCCAGCCCCGGAGCAGCCTGTGGAAAGCCAGCCACTGCTCCATCAGGAAGCGTCCAGCACTAACCCTGGTGACCACCCTGCACCTACGTATGCCCCTGCCCAGCAGCTTGAGCTGGCTGAGGCCAAAGAAGCTAGTGGTCCCAAGCAGAAGACGTGCCAGTGTTGTGTGGTCATGTGAGCCTACGCCTGCCGCCAGCACCCCACTCCTCCTCTCACAGCTACCTCGCTGCCTGGCACCCAGCAGAAGGTCCCAGGCATAGACAGGGTACCACAGGACTGGTAGTGGCACCCAGGAGCCGGAGGGCCCTGTGCTTTTAGATTCCCTGCCCACTGCCTGTGGCCCTGACTCCCTTCTGCAATGAAGCCTTTATACTTGAAAATTAAATGTTAAGGCACTCTGGCTTTAAG
AAAAAAAAGATTTATTTATTAATTTATTTTTATTTATTTATTTATTTTTATTTTATGCGT
GTGTTTTTCGGTGCATAAGTAACCATGTGTGTGCAGGGCTCACAGAAGCCAGAAGAGGGC
ATTGGATTCCTTGGACCTGGAGTTACAGGTGATTCTGAGCTGCCCTGTGGGTGCTGGAAA
CTGAACGTGTGTCCTTTGCAAGGGCAGGGAACCAAACTTTGGTCTACTGCAAGAAAACAC
AGGCTCTTAACCACTTCAGGCCCTTGAATGTGTCTTTCGAGTCACCACCTCATAGCCTGC
CTGGTAGTTATTCTTACTAGAATCAAAAGTTATGACTCGATGAAGTGACGCACACCTGTA
ATCCCAGCTCTGGGGATGCTGCAGCAGGGAGGATCACAAGTTCGAGGCCAGCCTTGGCTA
CCTAGCAAGCCTGTGACACAAGGAGGAAATAACAACGATGGGGTTGAGGCTGTGAGCTCA
CTGATTCTTCTGCAGTAACAAACAGATGCCCAAGACCCAGAGGCAAGGAAAGCAAAAGCT
GGTTGGGCGGGAGGCGGCACACTCATTTCTTCTCAGTCCTTGGAAGGCAAAACCAGGTGA
GTCTTGGTGAGTTCCAGGCCAGCCTGGTTGTTATATCAAGTTCCAGGCCAGCCATAGTGA
GATCCTGTCTCAAAAATCTAAAAATACAAAAACGTCTAGCCCAAGATAGGGGTACAGCCC
CTAGCCGTAAGCAGATCAGACTAGAAGGCCCAGCTCCTCTGGTGTGGGCAGGAAGTGTTT
CTCATACCCAGAGTAAATTGGGGCAGAGGCTTTAGGGGACTCCACAACAGGCTGTAGCTC
CACTTCCTCCACCTCCAGGATGGGTCCGTCCTTGGGCGGTTGGGGCAGGCTCACCTCCTG
GGGAGATGGAAGCTTGAAACTCAGTGCTCCTCCCCTCCCACTTGCCCCAGCATCCTCCAG
TTGGAGAGTGGTGCTCCCAGTTAGAGAGTGGTGCTCCCAG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GAAATCCACCTACCTCTGCCTCCTAAGTGCTGGGATCAAAGGCATGCGCC ACCACCGCCAGGCAAATCTTTAGATTCTTAAGAGTCTGTACTAGACTGTGGAACATAGGC CATTCCAGCCCTTGAGGACAGCCCCAATCCAGTATGGTGGAGCCTGTGCTTCCAGGAGAG ACACTCAACTTTACGTGCCAAAAGTGGCCCATGGAGCCCTGAAGCGGTCAGGAGAGGAGA GGCCTAGATGTGGGTAAGTTTACCACTCGGTGTGGTGGGGGAAGGGGTCCTTGCTCAGAG CAAGGTCCTCTGAAGCACCTAGCTGAGACAGACAAGGGCTGATCTCTTTCAAGACAAAGA TCAAACCTGGTCTGGTTGTGGAGGTCTGTAATGACAGAGTTCAAAGGAAAGACATCCTCG GTAGTGAATTGGAGGCCATTTCCCTATCGTTTATTTCTACCCCCACCCTTAAACATTAAA TAGCACAACAGGGTCTTCTGACCTGCAGGCCAATTGAAGTTATTCTCCCATTTCCCAGCG GGGCAAACTGAAGCCTTGAAACCTGAGGCAAATTGTCCACAGTGACCCACATCCTGGGCT TCTTGGTTGCCATGGTCTCCGAAAGCCGGGTCAGAGAGCTCTCCCTACAGCATGCTCCAA GGTCCTAGAAGGGAGAGCCAATGACTCTGGGCTTTTAGTAAAACTTTCCTGTGTGAGTGC CCAACGCAGGCGCGTGTTCCCCAGCGGCCGCGGGTCAGTGCTTGGCTGCTGTCCCCCACC TGCTGGAGCACCGGCGTGGCTGCGTGTATATGAACTGGGAGGCAGCCTAGCGCAGCGTGG AGGCCGGAGGCTGGTAAATAATTCATCCTGAGAAGTTGATAGCGCTCCCCAGCACTGCCC CAGCCCCAACCGGGCCGCGCCTCCCGCCCAAACCAGCTGGACCTGCTCTCCTGCTCCGCC CCACAGCCCCCTCCCATCAACCAAGGCCCAGTCTGGGGCCTTTGGCTCAC
1	EXON 1	84021471	84021528	-	2	58	ACCTCTGCTGGGCAGTGATGGCTCTGCAGACCCCGGTGTTGTCTCCGGCCACACCCAC
	INTRON 1 - 2	84021529	84024351			2823	GTAAGTGTCTGGGGTGGGGGCGGGA..........CTGAGCCCATGTGCTCTCCTTCCAG
2	EXON 2	84024352	84024400	2	0	49	GGTCATGGCGGAGAGCGCCCTCTATCGGCAGCGGCTGGAGGTCATCGCT
	INTRON 2 - 3	84024401	84026193			1793	GTAAGTGTTACACTCCCAGAGCCCT..........GCAGCTCTGGGTCGTGTGTGCGCAG
3	EXON 3	84026194	84026274	0	0	81	GAGAAGCGGCGGCTGCAGGAGGAGATCGGCGCCGCGCGTCGCGAGCTGGAGGAGGAGAAA CTCCGCGTGGAGCGGCTCAAG
	INTRON 3 - 4	84026275	84026748			474	GTTGGGGGCTCCTATCCAGTCCGGG..........TCCCGGACTCTCGTTCCATACCCAG
4	EXON 4	84026749	84026891	0	2	143	AGGAAATCTCTCCGAGAACGTTGGCTCATGGACGGGGCAGCTGAAGGGCCAGAACGGCCG GAGGAACCCGCCTCCAAGGACCCACAGTCGCCTGAGGGACAGGCCCAGGCTCGAATTCGC AACCTGGAAGACAGTTTGTTTTC
	INTRON 4 - 5	84026892	84026999			108	GTGAGTTGAGAATCCCTGATTTTGA..........TCCAGCAGCCTCCTTTCTCCCTCAG
5	EXON 5	84027000	84027084	2	0	85	ACTCCAGTCACAGCTACAGCTGTTGCAAAGTGCGTCCACAGGTGCTCAACACAGACCTGC TGGTAGGCCCGCCTGGCGCAGAGAG
	INTRON 5 - 6	84027085	84028125			1041	GTGAGCAGGGCCTGAAAGAGGTGGA..........GACCTTGTCTCTATTCTCCTTGCAG
6	EXON 6	84028126	84028171	0	1	46	GGTCCCCGTCCTCTCTCTCAGTCTGCCATGGAAGCAGCTCCTACCG
	INTRON 6 - 7	84028172	84028305			134	GTAAGCATTGGAGTCCCCAAGACCT..........TCCCGTCCTCCCTTGATTCCCCCAG
7	EXON 7	84028306	84030295	1	-	1990	CCCCGACTGATGTGGACAAGCGAACTTCCCTGCCAGATGCTCCAGTGGGCATGTCCCCTG AGTCTCCTTCTGATCCCAGGGAGGAGTCGATTGCGGTTCTACCAGCCTCGAGGCCATCCA CTGAAGCTATAGGGACATCTTCAGAAGCCAATGGCCCCTGCCCTGGGCACAGCCCTCTCC CAGAGCAGCTGAGTCTAGGGGTGTCGAGTGTCACTAAGGCCAAAGGAGATGGTGCAGTGG AGGTGGTTTGGGCTGGGCTTAGAGCCACTGAGAACAGTGCCACAGGCCCCACAGATGTGG AGCTGGAGGCTAAGGTGGAAGAAGTGGTTCTGGAGGCCATTGGGGCCAGGCAGGGCACCA GCAGCCCTGAGCTCCCCACTTGGGTGAAGGAGGGCAGGGGTGTAGTGGAAGTGGTCTGGG AGGGGCTGGGAGGCAGGGATCTTGATGTCACAGGGGAGTCAGGCAGGGATGCAGAGGCCA CACACACCAGTTCCAGGAGACTCCAGGAGCAATTTGAGGCTGAAACTTGCAGAAAAGAAG AAGGTGCTTCCAGAGATAGTCTTGAGGGTGTTGGGCAGGGAGGTCCTGGAGTAGAGGAGG GATCCTTCATTTGGGTGGAGAGAGTGGCCCTCAGCGAAGACTGGGAGGAGATTTTGATGG AGGGTTTGGAAGCACCGCAGGGGGCAGGGTCTGCAGGAGAACCTGAGGCTTTGATTGGAG CACAGCCCAGAGGAGGTGAAGCGTCCTGGGAGGTAGAGAAGAGAGAAGTAGAGAAAGTTG AGGGCATAGAAGAGAAGGGAAGGGCAGAAAAGCTCGGGGCAGAGAGGGAGGATGGTGTAG CTGTGCTGCCAGATGAGACCCAGGGAAGAGAGGAAAACGAGGCAGAAAAGGTAGAGAGAA AAGACAGTGAGGGCCCCTTTCCAGCAGAGATAGCAACAGATGAGGAAAAGTGGGAGGTGA AAACGACGGAAGGTGAAGAGTCGTTGGAAGTAGAAAAGGGAGGTGAGGCAGAGCCGGTCA CCACTGAGAAGCCATTGGTGACAGAAAAAAAGCCAGAGGGCTCACTGGAGACAGAGAGAA AAGGAAGTGAGATGCCATTGGACCAGGAGAAAGATGGTGAGGGCTCATTGGACAGAGAAT CAAAAACAACTGAGATACTATTGGATGGAGAGATAGGAGATAAGAGCTCATTGGATGAAA CTAAAGGAAGCAAGAAACTATTAGATGAGGAGACAGGAGGTGAGGGCTCATTGGATGAAG AAGCTGAAGGAAGTAAGAAACTATTGGACAGGGAGGCAGATGGCATCGAGCCATTCTCTG AGGTGGACAAGACCTCAGGCGCCAAGGATGATGTGAGTCCAGAAGAGCAAGGCAAAGCCA ACGAAGGAGCAGAGTTCCAGGCGGAGGATGCCAGCCCACCAGGAGCCACTGTTTGTGTCC AGGACGAGCCCAGGTCAGAGGAGCAAGGACAGCAAGAACCAGAGAAGCAAGAAGGCCTGG TAGAAGGGGCAGCCAGTAAGCCTGAGCCCTGTACTGAGCGAGAGGGTCCCCCAGGGGATG CTACCCTGCTCCTAGCTGAGACCCCAGCCCCGGAGCAGCCTGTGGAAAGCCAGCCACTGC TCCATCAGGAAGCGTCCAGCACTAACCCTGGTGACCACCCTGCACCTACGTATGCCCCTG CCCAGCAGCTTGAGCTGGCTGAGGCCAAAGAAGCTAGTGGTCCCAAGCAGAAGACGTGCC AGTGTTGTGTGGTCATGTGAGCCTACGCCTGCCGCCAGCACCCCACTCCTCCTCTCACAG CTACCTCGCTGCCTGGCACCCAGCAGAAGGTCCCAGGCATAGACAGGGTACCACAGGACT GGTAGTGGCACCCAGGAGCCGGAGGGCCCTGTGCTTTTAGATTCCCTGCCCACTGCCTGT GGCCCTGACTCCCTTCTGCAATGAAGCCTTTATACTTGAAAATTAAATGTTAAGGCACTC TGGCTTTAAG
	3' upstream sequence						AAAAAAAAGATTTATTTATTAATTTATTTTTATTTATTTATTTATTTTTATTTTATGCGT GTGTTTTTCGGTGCATAAGTAACCATGTGTGTGCAGGGCTCACAGAAGCCAGAAGAGGGC ATTGGATTCCTTGGACCTGGAGTTACAGGTGATTCTGAGCTGCCCTGTGGGTGCTGGAAA CTGAACGTGTGTCCTTTGCAAGGGCAGGGAACCAAACTTTGGTCTACTGCAAGAAAACAC AGGCTCTTAACCACTTCAGGCCCTTGAATGTGTCTTTCGAGTCACCACCTCATAGCCTGC CTGGTAGTTATTCTTACTAGAATCAAAAGTTATGACTCGATGAAGTGACGCACACCTGTA ATCCCAGCTCTGGGGATGCTGCAGCAGGGAGGATCACAAGTTCGAGGCCAGCCTTGGCTA CCTAGCAAGCCTGTGACACAAGGAGGAAATAACAACGATGGGGTTGAGGCTGTGAGCTCA CTGATTCTTCTGCAGTAACAAACAGATGCCCAAGACCCAGAGGCAAGGAAAGCAAAAGCT GGTTGGGCGGGAGGCGGCACACTCATTTCTTCTCAGTCCTTGGAAGGCAAAACCAGGTGA GTCTTGGTGAGTTCCAGGCCAGCCTGGTTGTTATATCAAGTTCCAGGCCAGCCATAGTGA GATCCTGTCTCAAAAATCTAAAAATACAAAAACGTCTAGCCCAAGATAGGGGTACAGCCC CTAGCCGTAAGCAGATCAGACTAGAAGGCCCAGCTCCTCTGGTGTGGGCAGGAAGTGTTT CTCATACCCAGAGTAAATTGGGGCAGAGGCTTTAGGGGACTCCACAACAGGCTGTAGCTC CACTTCCTCCACCTCCAGGATGGGTCCGTCCTTGGGCGGTTGGGGCAGGCTCACCTCCTG GGGAGATGGAAGCTTGAAACTCAGTGCTCCTCCCCTCCCACTTGCCCCAGCATCCTCCAG TTGGAGAGTGGTGCTCCCAGTTAGAGAGTGGTGCTCCCAG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Palm3 (ENSMUSG00000047986)
Transcript ID	ENSMUST00000055077

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 735 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information