MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cks2 (ENSMUSG00000062248)

Cross Reference

CCDS	CCDS36664.1
EMBL	AA041913, AA289122, AK002451, ...show all
Fantom	0610010C14, 1110038L14, I1C0002M13
GO	GO:0007127, GO:0016538, GO:0045859, ...show all
goslim_goa	GO:0000003, GO:0003674, GO:0007049, ...show all
MGI_trans_name	Cks2-001
OTTP	OTTMUSP00000028176
OTTT	OTTMUST00000058218
protein_id	AAH22647.1, AAH94919.1, BAB22110.1, ...show all
RefSeq_mRNA	NM_025415.3

RefSeq_peptide	NP_079691
UCSC	uc007qmh.2
UniParc	UPI00000019BA
Uniprot/SPTREMBL	Q545R9
Uniprot/SWISSPROT	P56390
Vega_transcript	Cks2-001, OTTMUST00000058218
Vega_translation	214456, OTTMUSP00000028176

Definition

protein_id:ENSMUSP00000075250
translation:

MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH
EPEPHILLFRRPLPKEQQK

Chromosome

Length
Position(start - end)

4975
51645413 - 51650389

Orient to Chromosome

plus

Link

Location : (13:51645413-51650389)
/

Detail Map

name	Cks2 (ENSMUSG00000062248)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cks2 note : CDC28 protein kinase regulatory subunit 2 [Source:MGI Symbol;Acc:MGI:1913447]

name	Gm22806 (ENSMUSG00000064672)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm22806 note : predicted gene, 22806 [Source:MGI Symbol;Acc:MGI:5452583]

name	Secisbp2 (ENSMUSG00000035139)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Secisbp2 note : SECIS binding protein 2 [Source:MGI Symbol;Acc:MGI:1922670]

name	Cks2 (ENSMUSG00000062248)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000075853

name	Secisbp2 (ENSMUSG00000035139)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000040117

name	Secisbp2 (ENSMUSG00000035139)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000110044

name	Cks2 (ENSMUSG00000062248) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36664.1 Uniprot/SWISSPROT:P56390 RefSeq_peptide:NP_079691 RefSeq_mRNA:NM_025415.3 Vega_transcript:Cks2-001 Vega_transcript:OTTMUST00000058218 Uniprot/SPTREMBL:Q545R9 UCSC:uc007qmh.2 Fantom:0610010C14 Fantom:1110038L14 Fantom:I1C0002M13 EMBL:AA041913 EMBL:AA289122 EMBL:AK002451 EMBL:AK004163 EMBL:AK166688 EMBL:BC022647 EMBL:BC094919 EMBL:CH466536 GO:GO:0007127 GO:GO:0016538 GO:GO:0045859 GO:GO:0051301 MGI_trans_name:Cks2-001 Vega_translation:214456 Vega_translation:OTTMUSP00000028176 goslim_goa:GO:0000003 goslim_goa:GO:0003674 goslim_goa:GO:0007049 goslim_goa:GO:0008150 goslim_goa:GO:0030234 goslim_goa:GO:0051301 protein_id:AAH22647.1 protein_id:AAH94919.1 protein_id:BAB22110.1 protein_id:BAB23199.1 protein_id:BAE38947.1 protein_id:EDL14275.1 OTTP:OTTMUSP00000028176 OTTT:OTTMUST00000058218 UniParc:UPI00000019BA
definition	note : transcript_id=ENSMUST00000075853 protein_id : ENSMUSP00000075250 translation : MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPLPKEQQK

name	Secisbp2 (ENSMUSG00000035139) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36665.1 RefSeq_peptide:NP_001295377.1 RefSeq_peptide:NP_083555 RefSeq_mRNA:NM_001308448.1 RefSeq_mRNA:NM_029279.1 Vega_transcript:OTTMUST00000049571 Vega_transcript:Secisbp2-001 Uniprot/SPTREMBL:Q3U1C4 UCSC:uc007qml.1 Fantom:F830007A19 EMBL:AC126547 EMBL:AK156076 EMBL:BC125391 EMBL:BC125393 EMBL:CH466546 GO:GO:0001514 GO:GO:0003730 GO:GO:0003730 GO:GO:0005515 GO:GO:0005515 GO:GO:0005654 GO:GO:0005654 GO:GO:0005739 GO:GO:0021756 GO:GO:0030529 GO:GO:0035368 GO:GO:0043021 GO:GO:0044822 GO:GO:0044822 GO:GO:0048666 GO:GO:2000623 MGI_trans_name:Secisbp2-001 Vega_translation:214457 Vega_translation:OTTMUSP00000022992 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0003729 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006412 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0048856 protein_id:AAI25392.1 protein_id:AAI25394.1 protein_id:BAE33574.1 protein_id:EDL41104.1 OTTP:OTTMUSP00000022992 OTTT:OTTMUST00000049571 UniParc:UPI00001C51DE
definition	note : transcript_id=ENSMUST00000040117 protein_id : ENSMUSP00000045740 translation : MASERPREPDGEDSIKLSADVKPFVPKFAGLNVAWSESSETRVFPGCAATYYPFVQEPPAAEQKMYPEDMAFGAPTFPAQYVSSEIALHPFAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPARGSSHLSSRTESSLKSDGYHKRPDRKSRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPKAKASQGGELEQNESSKKNKKKKEKSKPSYEVLTVQEPPRIEDAEEFPNLSVASERRHRGQSPKLHSKQQTQNEFKTSGKKSQVPVQLDLGGMLAALEKQQQQQHASHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERMQQRLQESAVSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDSATFPKIHSRRFRDYCSQMLSKEVDACVTGLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALNRKALGRSLNKAVPVSIVGIFSYDGAQDQFHKMVELTMAARQAYKTMLETMRQEQAGEPGPQSPPSPPMQDPIPSTEEGTLPSTGEEPHYIEIWKKHLEAYSQRALELEDSLEASTSQMMNLNL

name	Secisbp2 (ENSMUSG00000035139) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049572 Vega_transcript:Secisbp2-002 Uniprot/SPTREMBL:Q8BYU9 UCSC:uc007qmj.1 Fantom:A130069J03 EMBL:AC126547 EMBL:AK037988 GO:GO:0001514 GO:GO:0003730 GO:GO:0005515 GO:GO:0005654 GO:GO:0005739 GO:GO:0021756 GO:GO:0030529 GO:GO:0035368 GO:GO:0043021 GO:GO:0044822 GO:GO:0048666 GO:GO:2000623 MGI_trans_name:Secisbp2-002 Vega_translation:214458 Vega_translation:OTTMUSP00000022993 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0003729 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006412 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0048856 protein_id:BAC29914.1 OTTP:OTTMUSP00000022993 OTTT:OTTMUST00000049572 UniParc:UPI00000EA4D6
definition	note : transcript_id=ENSMUST00000110044 protein_id : ENSMUSP00000105671 translation : MASERPREPDGEDSIKLSADVKPFVPKFAGLNVAWSESSETRVFPGCAATYYPFVQEPPAAEQKMYPEDMAFGAPTFPAQYVSSEIALHPFAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPARGSSHLSSRTESSLKSDGYHKRPDRKSRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPKVCVKDPRSRMGSGCSGKNCNSALGRLIQEDCKSKAILGHIVNPCLKIKAIR

name
type	misc_feature
link
xref
definition	note : contig AC126547.4 30663..181823(1)

name	Gm22806 (ENSMUSG00000064672)
type	misc_RNA
link	VEGA Ensembl MGI
xref	MGI_trans_name:Gm22806-201 RNACentral:URS0000659250
definition	note : snoRNA note : transcript_id=ENSMUST00000082738

name	Secisbp2 (ENSMUSG00000035139)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049573 Vega_transcript:OTTMUST00000049573 MGI_trans_name:Secisbp2-003 OTTT:OTTMUST00000049573
definition	note : processed_transcript note : transcript_id=ENSMUST00000154202

name	Secisbp2 (ENSMUSG00000035139)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049574 Vega_transcript:OTTMUST00000049574 MGI_trans_name:Secisbp2-004 OTTT:OTTMUST00000049574
definition	note : processed_transcript note : transcript_id=ENSMUST00000127360

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cks2 (ENSMUSG00000062248)
Transcript ID	ENSMUST00000075853

Reports
substitution
cSNPs	0
Insertion	6
Deletion	16
SNPs	-1kb 51640642(c.-4771G>A), 51640723(c.-4690A>C), 51640958(c.-4455G>A), 51641012(c.-4401C>T), 51641134(c.-4279T>C), 51641750(c.-3663C>A), 51641770(c.-3643A>C), 51641771(c.-3642G>A), 51641814(c.-3599T>G), 51641834(c.-3579C>T), 51641916(c.-3497G>A), 51642066(c.-3347C>G), 51642375(c.-3038C>T), 51642500(c.-2913G>T), 51642522(c.-2891T>A), 51642595(c.-2818G>A), 51642619(c.-2794A>G), 51642636(c.-2777T>C), 51642774(c.-2639A>T), 51643085(c.-2328A>G), 51643462(c.-1951A>G), 51643464(c.-1949T>G), 51643965(c.-1448A>T), 51644161(c.-1252T>C), 51644620(c.-793G>T), 51644662(c.-751C>T), 51644718(c.-695A>C), 51644785(c.-628G>T), 51645012(c.-401C>T), 51645013(c.-400C>G), 5'UTR CDS 3'UTR INTRON 51645477(c.59+6G>C), 51645769(c.59+298A>T), 51645999(c.59+528A>C), 51646462(c.59+991T>C), 51646779(c.59+1308T>C), 51647057(c.59+1586A>G), 51647262(c.59+1791G>A), 51647383(c.59+1912G>T), 51647501(c.59+2030A>G), 51647572(c.60-2013C>T), 51647600(c.60-1985C>A), 51647760(c.60-1825G>A), 51648610(c.60-975G>A), 51648669(c.60-916G>A), 51648696(c.60-889A>G), 51649358(c.60-227A>G), 51649505(c.60-80G>T), +1kb 51650943(c.554A>G), 51651222(c.833A>G), 51651353(c.964A>G), 51651641(c.1252G>C), 51651750(c.1361G>T), 51652134(c.1745C>G), 51652172(c.1783A>C), 51652180(c.1791A>G), 51652205(c.1816T>C), 51652270(c.1881A>G), 51652331(c.1942C>A), 51652690(c.2301G>A), 51652691(c.2302A>G), 51652750(c.2361A>G), 51652899(c.2510T>C), 51652918(c.2529A>G), 51652919(c.2530A>C), 51652960(c.2571C>A), 51653015(c.2626C>T), 51653076(c.2687G>A), 51653131(c.2742G>A), 51653210(c.2821C>T), 51653372(c.2983T>C), 51653645(c.3256G>A), 51653676(c.3287T>C), 51653701(c.3312C>T), 51653711(c.3322G>A), 51653902(c.3513G>A), 51654050(c.3661A>C), 51654256(c.3867G>A), 51654894(c.4505A>G), 51654916(c.4527G>A), 51655076(c.4687T>C), 51655325(c.4936G>T), 51655341(c.4952C>T), 51655439(c.5050A>G), 51655622(c.*5233C>T),
Insertions	-1kb 51640570 (c.-4843_-4842insC), 51642156 (c.-3257_-3256insTG), 51644426 (c.-987_-986insAAAAA), 5'UTR CDS 3'UTR INTRON 51649920 (c.187+211_187+213dupCAG), 51650092 (c.188-248_188-245dupATTT), +1kb 51651330 (c.941_942insAC),
Deletions	-1kb 51640242 (c.-5170_-5167delCACA), 51641148 (c.-4264_-4256delAATAATAAT), 51642448 (c.-2964delG), 51643819 (c.-1593delA), 51644595 (c.-817_-816delAA), 5'UTR CDS 3'UTR INTRON 51647635 (c.60-1949_60-1946delATAT), 51647990 (c.60-1594_60-1592delCAA), 51648977 (c.60-600delC), 51650017 (c.187+306_187+311delTCACCC), +1kb 51650700 (c.312delG), 51651575 (c.1187_1189delCCA), 51651930 (c.1542_1543delAT), 51652418 (c.2030_2032delTTT), 51653576 (c.3188delC), 51653851 (c.3463_3464delAA), 51653940 (c.3552_3553delTG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000075853)	MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH EPEPHILLFRRPLPKEQQK*
MSMv4 transcript	MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH EPEPHILLFRRPLPKEQQK*
homology	100.00 (80 / 80)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cks2 (ENSMUSG00000062248)
Transcript ID	ENSMUST00000075853

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ATCCTACCATCTGTTAAAGATATTAGGCTGAAGCTGGACGGTGATGGGGC ATCCACTTTTAATCCCAGCACTGGGGAGGCAGGGGCAGGAGGATCGCTGAGTTTGAGGCC AGCTTGGTGTACAGAGCGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACTCTGTCTCA AAAACAAAACAAAACAAAACAAAACAAAAAACAGCCGGGCGGTGGTGGCGCACGCCTTTA ATCCCAGCATTTGGGAGGCAGAGGCAAATGGATTTCTGAGTTCGAGGCCAGCCTGGTTTA CAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGGAAAAGCCAGTCTCCGAAAAAACAAA AACCAAACCAAACTAAAAAAAAAAAAGGAGGAGGGAGGTGTGTTGACCTGGCATTGGAGT ACAGGGATTAAAGGTGTGGGTCAGTACGCCCAGCTGCCGTGGGTTACTTTGTTATCCTAA CAGCCACACCAGAGCACTTCATCCACTGCAACAAATCGCAAAAATATTAAAAGAAAAATG ACACCTGCTCATTGTAGAAAATGTTTGTTATATGTAACTTGCTGCACGAAACCACGACTT AACACCCTTTCAACTTCCTTTTACATGAGCACATCTTTTTAAGATGGGACTAGCTCGCAG CCAAGCGTAATTAGCGTTGCCATCAGGGGCAGCGGAGGGCACCTTACCCTCTGGAACGCT CCGCAGCTGGACTTCCCTGACCACAGAGACCGCCCCCCAGGCGTCTCGTGCCGCTCCGGC CCCCAGAGCCTGGGATACCTCATCTCGTGTCCGCCCACCACCCAACGGTTCTGCCCCCAG GCACGTTCTAAACCACTGCGCACGCGCTGCGAGGCACTTAACGACTCGGCTCCGCCCTTC TCAATATCTCTTGGGGTCGCCGGGCGCTCCTCGCTGAATCGTTAGCCAATCCTTACTCCC GCCCTCGCAATCTTGCAACAGGCTTCTGATTGGTTACCTGTCCTCGAGGT
1	EXON 1	51645232	51645471	-	2	240	CTGCGCGGAGCGTGATTGGTTGGTGGCTTCGCCCAATCGGCGGAGGGCTGTCGGATTCAA ATCCAGAGCGTTGGGCCTGCGGTCGTTGGCCTCATTCGAGTCGTTGCGTCGGCCCTAGGC GGACGTAGAGCCCCTTGCGCCCGGTTTCCTGATCCCGCTTACTCCTCTGCGCGCCGGCAG GATGGCCCACAAGCAGATCTACTACTCAGACAAGTACTTCGATGAGCACTACGAGTACCG
	INTRON 1 - 2	51645472	51649584			4113	GTGAGCAGCGCCTGCGGAGGAGGGC..........AATCTTTGGCTGAATATTTTAATAG
2	EXON 2	51649585	51649712	2	1	128	GCATGTCATGTTACCCAGAGAACTCTCTAAACAAGTACCCAAAACTCATCTGATGTCCGA AGAGGAGTGGAGGAGACTTGGTGTCCAACAGAGTCTAGGATGGGTTCATTACATGATTCA TGAGCCAG
	INTRON 2 - 3	51649713	51650336			624	GTAAGCTTTGCTGTAAAGGAAAGTG..........GGAACTTAATATTTTCTTTCCACAG
3	EXON 3	51650337	51650660	1	-	324	AACCGCATATTCTTCTCTTTAGACGACCTCTTCCAAAAGAACAACAAAAATGAAGTGCAG CTGGGATCATCTAATCTTTTTCAAATTTAATGTATATGTGTATATAAGGTAGTATTCAGT GAATACTTGAAAAGTGTACAAACCTTTCATCCATACCTGTGCATGCGCTGTATTCTTCAC AGCAACAGAGCTCAGTCAAATGCAACTGCAAGTAGGGTTGTTTTAAGTTGTTCAAGATAG TTTCTTGTAGTTTTTTCTTAATATAAATGCCTGTTTTATTTTACCTGTTTTGTTAAATAA AGTTTGTATATTGCATTTATATCA
	3' upstream sequence						CCATTGTTGAAATTAATTTGACTTGATTATTTTTACCCCTGGGGAAAATAAACATACTTG AAAAAGAAATATAAGAAAATAAACATACTTGAAAAAGAAATATTAAGCTCCAAATGAGGA TATTACAGCTTTATTGCCAGTTTACTTCCTAAATAACTTTGGATTCTGCAAGTGAACAGA AAAACCCACCGCTTGATAGTGTCCACAAGTCTACAAAAAGTCTAGTGGTTTCAGAGAAAA GTATCTTAAAAGTTCAGGTGCCACATTCGTGCATCTTGTGTGGACCAAGAAATTAAGCAC ACATCAGTGGATAGCCATAAAAAAAAGTATGAGTGGCCAGAAACAAGACTGTAGTTAGAC ATTAGCAGGGGTGATTTCTCATTGAACACAGTAAACACTACAGAGCCACAGCCTTCCATG TGTGGGATACACTAGACCTAACAGGGCTACTGACCATGAACTGGCACTGGTGTCTTGCTT GAAAAAAAGGGCTGGTGTTTAATTCTAACCCTACAGACTGACTCCAAGGCCTGTTTGCCA AATGCCCCCACATTGCAGGCGGCCTTTTTCTGTCCTTCGACCTGTTTCTGTGCTCTTGGT TTCATTTTGGAGTTGTGTTTTGCGAGAGCTTCCTGTTGTCCAGGCCCCAGCAGAAGTCTC ACATAGCTAAACATTTGACTCCTCTTAGTTCCGAGGTTCTTCATCTGCCTGCAGGCACCC GCCATGACATCCTACTAGAAACTCCACAGGAGCAGATGCTCCTGGAAGCTCACCACTGAG CAGGTCTGCCGGCCTCACTCTTACTAGGAGTCTCCCTCCTGCACTGCATCAGTGCGGGCG CCCAGAGCCTGGCCTCCCCTAGTGTCACATCACCAAGCCCGCCCCACGTAAGAGCTCAGC CGCGCCCTTCCTGGCCCACCACAAGCCACCCCCTAGAGCTGTCGCTGCCCCAGTCTTCCA CGTGCGGCTCCGGAGGCCCGCGACGCCGAGCACTTCCGGC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cks2 (ENSMUSG00000062248)
Transcript ID	ENSMUST00000075853

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 80 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information