MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cldn24 (ENSMUSG00000061974)

Cross Reference

CCDS	CCDS52549.1
EMBL	AC110509, CH466554
GO	GO:0003674, GO:0005198, GO:0005923, ...show all
goslim_goa	GO:0003674, GO:0005198, GO:0005575, ...show all
MGI_trans_name	Cldn24-201
protein_id	EDL35614.1
RefSeq_mRNA	NM_001111318.1
RefSeq_peptide	NP_001104788
UCSC	uc012gdp.1
UniParc	UPI0000194661

Uniprot/SPTREMBL

D3YXJ9

Definition

protein_id:ENSMUSP00000078584
translation:

MAFIFRTAMQSVGLSLSLLGWVLAIITTYLPHWKNLNLELNEMENWTMGLWKSCVIQEEV
GRQCKDFDSFLALPAELQVSRVLMSLCNGLGLLGLLASGCGLDCLRLGETQEGLKKRLLT
LGGTLLWTSGVMVLVPVSWVAHKTVREFWDETMPEIVPRWEFGEALFLGWFAGFCLVLGG
CVLHCAACSSPAPAASSHYAGAGPRDHGSYLENGTVQPKV

Chromosome

Length
Position(start - end)

661
47822143 - 47822805

Orient to Chromosome

plus

Link

Location : (8:47822143-47822805)
/

Detail Map

name	Cldn24 (ENSMUSG00000061974)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cldn24 note : claudin 24 [Source:MGI Symbol;Acc:MGI:3712484]

name	Cldn22 (ENSMUSG00000038064)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cldn22 note : claudin 22 [Source:MGI Symbol;Acc:MGI:1922927]

name	Cldn24 (ENSMUSG00000061974)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000079639

name	Cldn22 (ENSMUSG00000038064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000038693

name	Cldn24 (ENSMUSG00000061974) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS52549.1 RefSeq_peptide:NP_001104788 RefSeq_mRNA:NM_001111318.1 Uniprot/SPTREMBL:D3YXJ9 UCSC:uc012gdp.1 EMBL:AC110509 EMBL:CH466554 GO:GO:0003674 GO:GO:0005198 GO:GO:0005923 GO:GO:0008150 GO:GO:0016021 GO:GO:0016324 MGI_trans_name:Cldn24-201 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 protein_id:EDL35614.1 UniParc:UPI0000194661
definition	note : transcript_id=ENSMUST00000079639 protein_id : ENSMUSP00000078584 translation : MAFIFRTAMQSVGLSLSLLGWVLAIITTYLPHWKNLNLELNEMENWTMGLWKSCVIQEEVGRQCKDFDSFLALPAELQVSRVLMSLCNGLGLLGLLASGCGLDCLRLGETQEGLKKRLLTLGGTLLWTSGVMVLVPVSWVAHKTVREFWDETMPEIVPRWEFGEALFLGWFAGFCLVLGGCVLHCAACSSPAPAASSHYAGAGPRDHGSYLENGTVQPKV

name	Cldn22 (ENSMUSG00000038064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS52550.1 Uniprot/SWISSPROT:Q9D7U6 RefSeq_peptide:NP_083659 RefSeq_mRNA:NM_029383.1 UCSC:uc012gdq.1 Fantom:2210404A22 EMBL:AK008821 GO:GO:0003674 GO:GO:0005198 GO:GO:0005575 GO:GO:0005886 GO:GO:0005923 GO:GO:0008150 GO:GO:0016021 GO:GO:0016338 GO:GO:0042802 MGI_trans_name:Cldn22-201 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0008150 protein_id:BAB25914.1 UniParc:UPI000002743D
definition	note : transcript_id=ENSMUST00000038693 protein_id : ENSMUSP00000041676 translation : MGLVFRTATQAAALLLSLLGWVLSCLTNYLPHWKNLNLELNEMENWTMGLWKSCVIQEEVGRQCKDFDSFLALPAELQVSRVLMSLCNGLGLLGLLASGCGLDCLRLGETQEGLKKRLLTLGGTLLWTSGVMVLVPVSWVAHKTVREFWDETMPEIVPRWEFGEALFLGWFAGFCLVLGGCVLHCAACWSPAPAASSHYAVAGPRDHQQHLELKQANPEI

name
type	misc_feature
link
xref
definition	note : contig AC110509.21 1..150170(-1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cldn24 (ENSMUSG00000061974)
Transcript ID	ENSMUST00000079639

Reports
substitution
cSNPs	1
Insertion	6
Deletion	10
SNPs	-1kb 47817143(c.-5000A>T), 47817201(c.-4942T>C), 47817517(c.-4626C>A), 47817519(c.-4624G>A), 47817525(c.-4618A>G), 47817726(c.-4417C>T), 47817907(c.-4236C>T), 47817978(c.-4165T>C), 47818029(c.-4114A>G), 47818044(c.-4099A>G), 47818074(c.-4069G>A), 47818079(c.-4064C>T), 47818105(c.-4038T>C), 47818142(c.-4001G>C), 47818241(c.-3902T>C), 47818264(c.-3879C>T), 47818280(c.-3863C>T), 47818286(c.-3857C>T), 47818288(c.-3855C>T), 47818334(c.-3809T>C), 47818347(c.-3796A>C), 47818372(c.-3771T>C), 47818681(c.-3462C>T), 47818766(c.-3377A>G), 47818794(c.-3349G>T), 47818799(c.-3344T>G), 47819424(c.-2719T>C), 47820264(c.-1879G>A), 47820440(c.-1703G>A), 47820463(c.-1680T>G), 47820498(c.-1645G>A), 47821517(c.-626G>T), 5'UTR CDS 47822747(c.605C>T), 3'UTR INTRON +1kb 47822986(c.181T>G), 47823253(c.448C>T), 47823884(c.1079C>A), 47823885(c.1080G>C), 47824019(c.1214G>A), 47825059(c.2254G>A), 47825117(c.2312A>G), 47825134(c.2329G>A), 47825139(c.2334C>T), 47825486(c.2681T>C), 47825598(c.2793A>C), 47825600(c.2795G>A), 47825634(c.2829G>A), 47825672(c.2867A>C), 47825673(c.2868C>A), 47825675(c.2870C>T), 47825750(c.2945A>G), 47825811(c.3006T>C), 47826011(c.3206C>G), 47827289(c.4484G>A), 47827312(c.*4507A>G),
Insertions	-1kb 47817855 (c.-4288_-4287insTT), 47817862 (c.-4281_-4280insTTTC), 47819822 (c.-2321_-2320insC), 47819827 (c.-2316_-2315insA), 5'UTR CDS 3'UTR INTRON +1kb 47823800 (c.995_996insCC), 47824147 (c.1342_1343insTTTT),
Deletions	-1kb 47817740 (c.-4402delT), 47818153 (c.-3989_-3986delTCTC), 47818299 (c.-3843delG), 47818547 (c.-3595_-3592delGTTT), 47818569 (c.-3573delT), 47819822 (c.-2320_-2317delTCTC), 47820908 (c.-1234_-1229delAAAACA), 5'UTR CDS 3'UTR INTRON +1kb 47823630 (c.826_828delAAC), 47827214 (c.4410_4412delGTT), 47827593 (c.4789_4790delCT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	1
synonymous substitutions
non-synonymous substitutions	47822747 (p.Ala202Val),
B6 transcript (ENSMUST00000079639)	MAFIFRTAMQSVGLSLSLLGWVLAIITTYLPHWKNLNLELNEMENWTMGLWKSCVIQEEV GRQCKDFDSFLALPAELQVSRVLMSLCNGLGLLGLLASGCGLDCLRLGETQEGLKKRLLT LGGTLLWTSGVMVLVPVSWVAHKTVREFWDETMPEIVPRWEFGEALFLGWFAGFCLVLGG CVLHCAACSSPAPAASSHYAGAGPRDHGSYLENGTVQPKV*
MSMv4 transcript	MAFIFRTAMQSVGLSLSLLGWVLAIITTYLPHWKNLNLELNEMENWTMGLWKSCVIQEEV GRQCKDFDSFLALPAELQVSRVLMSLCNGLGLLGLLASGCGLDCLRLGETQEGLKKRLLT LGGTLLWTSGVMVLVPVSWVAHKTVREFWDETMPEIVPRWEFGEALFLGWFAGFCLVLGG CVLHCAACSSPAPAASSHYAGVGPRDHGSYLENGTVQPKV*
homology	99.55 (221 / 221)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cldn24 (ENSMUSG00000061974)
Transcript ID	ENSMUST00000079639

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CCACCAGAGATGGAACGTGCTCTGGGAATCCAGAGCATGTGGCCTTTTGT CCTGGCCTGGGAGGGAGGCCCAGTGTTCTTTGAGGGGTCATGCTCGCCTGAGGTATGTTC TCAAGGTGTGGCCTGAGCCAAAACAACAAGATGAAGCCTCAAAGGTCAGCCCCAGCGTGG CTGTTACTCTCATACCAGACTTTCGTCTTGAACCTGAAAGGCGCCTTCATGCCCGCAGCT CCTCTGCCTTTTCAGATGAAGTGGTGTAGAAAGCTCTGCTCTGGGCAGTGAGCAGCTCCC AGAGACACATCAGCCTTTACCCGGTGTCTGTAATGAGGGGGGACTAAATACTGTTGGATT TTCCCACAATGCCCCTTTCCTCACTCAGTTTCTCTGAGTACCAACCGGGGTCCTTACATT TTAATTAGTGCAGTGAACTGCCAAGTCCCGAGGGAGTCCCCATGACACTCAGGAACACAG GGTGAGCTCGTGTGTAGGTTAAGGATGTCTGAGGAGAACAGAGATTATAGGGAAACAGTC TACCTTTCTTTACAAGGCCTTGTTTCGCATCCCTGAAATCTCAGATGCGGCTATTACAAT GAGGTCCTGTTGTAGAAAGAGCTGGCCTTTTATCACCACTTAAAATCTAATTAATCCATA TTGAAGCACAAAGATTTCTGTTGTACGTTAGGGTGAGGGGTCATAGAGACCTCTTTGTTC ATCTTCAGACTTATACTCGTCAAGCACTGGGGATATAATTTTACCAAGCAAATTGGAAGG TAACAGATCAAATCCTTATCAGAGAGCCTAACTCATAGTTTTTTAACAGAGTCCTTCACC CTTTACATGAAACACTATATTCAAGAGGAACAAAAACGTATTTTAGAGTGCCAGAGAGTT AATGACCAAAGCTTATACCCTGGGCAGCACAGGCTCAAGATCATTACGCCACTGTCAACC ACAAGGGACGGCAGATCCTATAGAGTGGCTAAGTTGTAGTCTCTATCCCG
1	EXON 1	47822143	47822805	-	-	663	ATGGCTTTCATCTTCAGAACGGCCATGCAATCAGTAGGGCTTTCTCTGTCATTGCTGGGA TGGGTTCTAGCCATTATTACCACATATCTACCACACTGGAAGAACCTTAACTTGGAGCTG AACGAGATGGAGAACTGGACCATGGGGCTCTGGAAATCCTGCGTCATCCAGGAGGAAGTC GGGAGGCAATGCAAGGACTTTGACTCCTTCCTGGCCTTGCCAGCTGAACTGCAGGTCTCC AGGGTCTTGATGTCCCTGTGCAACGGGCTGGGGCTGCTGGGCTTGCTGGCCTCTGGCTGT GGCCTGGACTGCTTGAGGCTTGGAGAGACACAGGAGGGTCTGAAGAAGCGGCTGCTCACC CTGGGAGGGACCCTGCTCTGGACCTCGGGAGTCATGGTGCTAGTTCCTGTCTCCTGGGTG GCCCACAAGACGGTGCGGGAGTTCTGGGATGAGACCATGCCTGAGATTGTGCCCAGGTGG GAGTTTGGGGAGGCCCTGTTCCTGGGCTGGTTTGCTGGCTTCTGCCTGGTGCTAGGAGGG TGTGTGCTTCACTGTGCAGCCTGCTCGAGCCCAGCTCCTGCAGCCTCGAGTCACTATGCA GGGGTGGGACCTCGAGATCATGGTTCATACCTAGAAAATGGAACTGTACAGCCTAAAGTG TAA
	3' upstream sequence						GCCACCAGCAGGGCCGAGTCGTGTCCTTAATCAGCTGATTACAAAAAAGGTCTCTGTTGT GTCCTTATGTAACTAAATCGTACTGCTCACATTTTCTTCATTCAATAGCTGTTTTTAACA TTTTCTTTTTTCTGTACTAGAGGTTCACTTTTTCAAATCTGAACGAAAGGAAGTCTATAA GGAATTTATTATGACACACATTGCATAGCTATGTGTGGAAAAAAAAGACTTGCCATTGAT TTGATTATTTAAGCCTGTGTATGCTGGGGATTGTCCAATTTGTCTAGTGCTGTGATACGT TCACTTTGTGGGAAAGCTGTGTTGCTGTCTATGGCTGGAAAGGGTAATTACTTTCCACTT CCTAAAGAAAATAATGACAACCTGCACTCTTTTTCTTTTTCTCTCCAAGGCAGGGCTTCT CTGTGTAGCCCTGGCTGTCCTGGAACTTACTCTGTAGACCAGGCTAGTCTTGAACTCAGA AATCTGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGAGGCACGTGCCACTACTGCCG GGCGATAATCTGCACTCTTAAGTATTGTTAGAGTCCCAGGCTAAGCCAGTCCCCAAATGT CATCTCCATTGTGGGCCTGCTCTTTAAACAAAAGCATTCGTGTTGAGCTATTTCCAGGAA CCTGGTGAACTGGAGGAGGCTTTTGGAGGCTGGATGATCCTGGATGATTCTTGGTGTTCT GGGTGATTCCAGATGGACCACCAGAACACCAGGGTCCTCTACTAAGTAGCTAATCTCTGT TCTCATTTCTTTCCTCAAAAGCTTCAAATTTAAAAAGAAAAAAAAAACCACAAAAAGCAT TTAAAAATTTTTTTTTGCTATCTAGATTCTGTCTGTGTGTGTGTCAGAATGAAAGCGTCT GTGTCCAGTTAAAAAGGACAGATGTGAGGCTGTCTCTTGGAGTGGTGAGCAGTCTAGAAA GCATATTTCAGTAAAGATGCAAAAGGCAAAAACTGCCCCC..........

No.

Exon / Intron

Start

End

Start Phase

End Phase

Length

Sequence

5' upstream sequence

..........CCACCAGAGATGGAACGTGCTCTGGGAATCCAGAGCATGTGGCCTTTTGT
CCTGGCCTGGGAGGGAGGCCCAGTGTTCTTTGAGGGGTCATGCTCGCCTGAGGTATGTTC
TCAAGGTGTGGCCTGAGCCAAAACAACAAGATGAAGCCTCAAAGGTCAGCCCCAGCGTGG
CTGTTACTCTCATACCAGACTTTCGTCTTGAACCTGAAAGGCGCCTTCATGCCCGCAGCT
CCTCTGCCTTTTCAGATGAAGTGGTGTAGAAAGCTCTGCTCTGGGCAGTGAGCAGCTCCC
AGAGACACATCAGCCTTTACCCGGTGTCTGTAATGAGGGGGGACTAAATACTGTTGGATT
TTCCCACAATGCCCCTTTCCTCACTCAGTTTCTCTGAGTACCAACCGGGGTCCTTACATT
TTAATTAGTGCAGTGAACTGCCAAGTCCCGAGGGAGTCCCCATGACACTCAGGAACACAG
GGTGAGCTCGTGTGTAGGTTAAGGATGTCTGAGGAGAACAGAGATTATAGGGAAACAGTC
TACCTTTCTTTACAAGGCCTTGTTTCGCATCCCTGAAATCTCAGATGCGGCTATTACAAT
GAGGTCCTGTTGTAGAAAGAGCTGGCCTTTTATCACCACTTAAAATCTAATTAATCCATA
TTGAAGCACAAAGATTTCTGTTGTACGTTAGGGTGAGGGGTCATAGAGACCTCTTTGTTC
ATCTTCAGACTTATACTCGTCAAGCACTGGGGATATAATTTTACCAAGCAAATTGGAAGG
TAACAGATCAAATCCTTATCAGAGAGCCTAACTCATAGTTTTTTAACAGAGTCCTTCACC
CTTTACATGAAACACTATATTCAAGAGGAACAAAAACGTATTTTAGAGTGCCAGAGAGTT
AATGACCAAAGCTTATACCCTGGGCAGCACAGGCTCAAGATCATTACGCCACTGTCAACC
ACAAGGGACGGCAGATCCTATAGAGTGGCTAAGTTGTAGTCTCTATCCCG

EXON 1

47822143

47822805

663

ATGGCTTTCATCTTCAGAACGGCCATGCAATCAGTAGGGCTTTCTCTGTCATTGCTGGGA
TGGGTTCTAGCCATTATTACCACATATCTACCACACTGGAAGAACCTTAACTTGGAGCTG
AACGAGATGGAGAACTGGACCATGGGGCTCTGGAAATCCTGCGTCATCCAGGAGGAAGTC
GGGAGGCAATGCAAGGACTTTGACTCCTTCCTGGCCTTGCCAGCTGAACTGCAGGTCTCC
AGGGTCTTGATGTCCCTGTGCAACGGGCTGGGGCTGCTGGGCTTGCTGGCCTCTGGCTGT
GGCCTGGACTGCTTGAGGCTTGGAGAGACACAGGAGGGTCTGAAGAAGCGGCTGCTCACC
CTGGGAGGGACCCTGCTCTGGACCTCGGGAGTCATGGTGCTAGTTCCTGTCTCCTGGGTG
GCCCACAAGACGGTGCGGGAGTTCTGGGATGAGACCATGCCTGAGATTGTGCCCAGGTGG
GAGTTTGGGGAGGCCCTGTTCCTGGGCTGGTTTGCTGGCTTCTGCCTGGTGCTAGGAGGG
TGTGTGCTTCACTGTGCAGCCTGCTCGAGCCCAGCTCCTGCAGCCTCGAGTCACTATGCA
GGGGTGGGACCTCGAGATCATGGTTCATACCTAGAAAATGGAACTGTACAGCCTAAAGTG
TAA

3' upstream sequence

GCCACCAGCAGGGCCGAGTCGTGTCCTTAATCAGCTGATTACAAAAAAGGTCTCTGTTGT
GTCCTTATGTAACTAAATCGTACTGCTCACATTTTCTTCATTCAATAGCTGTTTTTAACA
TTTTCTTTTTTCTGTACTAGAGGTTCACTTTTTCAAATCTGAACGAAAGGAAGTCTATAA
GGAATTTATTATGACACACATTGCATAGCTATGTGTGGAAAAAAAAGACTTGCCATTGAT
TTGATTATTTAAGCCTGTGTATGCTGGGGATTGTCCAATTTGTCTAGTGCTGTGATACGT
TCACTTTGTGGGAAAGCTGTGTTGCTGTCTATGGCTGGAAAGGGTAATTACTTTCCACTT
CCTAAAGAAAATAATGACAACCTGCACTCTTTTTCTTTTTCTCTCCAAGGCAGGGCTTCT
CTGTGTAGCCCTGGCTGTCCTGGAACTTACTCTGTAGACCAGGCTAGTCTTGAACTCAGA
AATCTGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGAGGCACGTGCCACTACTGCCG
GGCGATAATCTGCACTCTTAAGTATTGTTAGAGTCCCAGGCTAAGCCAGTCCCCAAATGT
CATCTCCATTGTGGGCCTGCTCTTTAAACAAAAGCATTCGTGTTGAGCTATTTCCAGGAA
CCTGGTGAACTGGAGGAGGCTTTTGGAGGCTGGATGATCCTGGATGATTCTTGGTGTTCT
GGGTGATTCCAGATGGACCACCAGAACACCAGGGTCCTCTACTAAGTAGCTAATCTCTGT
TCTCATTTCTTTCCTCAAAAGCTTCAAATTTAAAAAGAAAAAAAAAACCACAAAAAGCAT
TTAAAAATTTTTTTTTGCTATCTAGATTCTGTCTGTGTGTGTGTCAGAATGAAAGCGTCT
GTGTCCAGTTAAAAAGGACAGATGTGAGGCTGTCTCTTGGAGTGGTGAGCAGTCTAGAAA
GCATATTTCAGTAAAGATGCAAAAGGCAAAAACTGCCCCC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cldn24 (ENSMUSG00000061974)
Transcript ID	ENSMUST00000079639

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 221 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information