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Target CDS Information

Gene Symbol (Gene ID) Tcea1 (ENSMUSG00000033813)
Cross Reference
CCDS CCDS35505.1
EMBL AK136035, BC006022, BC061490, ...show all
Fantom 7420449J21
GO GO:0003677, GO:0005515, GO:0005634, ...show all
goslim_goa GO:0002376, GO:0003674, GO:0003677, ...show all
MGI_trans_name Tcea1-001
OTTP OTTMUSP00000062523
OTTT OTTMUST00000111602
protein_id AAA40418.1, AAA40419.1, AAH06022.1, ...show all
Reactome R-MMU-110302, R-MMU-110304, R-MMU-112382, ...show all
RefSeq_mRNA NM_001159750.1, NM_011541.4
RefSeq_peptide NP_001153222.1, NP_035671
UCSC uc007afi.2
UniParc UPI00000278FD
Uniprot/SPTREMBL Q3UWX7
Uniprot/SWISSPROT P10711
Vega_transcript OTTMUST00000111602, Tcea1-001
Vega_translation 178617, OTTMUSP00000062523
Definition protein_id:ENSMUSP00000080266
translation:
MEDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDE
EVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDET
NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEI
RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
C

Chromosome 1
Length
Position(start - end)
38449
4857914 - 4896364
Orient to Chromosome plus
Link Location : (1:4857914-4896364)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tcea1 (ENSMUSG00000033813)
Transcript ID ENSMUST00000081551
Reports
substitution
cSNPs3
Insertion30
Deletion52
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 4878056 (p.Ala52Ala), 4892007 (p.Leu206Leu), 4892045 (p.Asp218Asp),
non-synonymous substitutions
B6 transcript
(ENSMUST00000081551)
MEDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDE
EVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDET
NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEI
RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
C*
MSMv4 transcript
MEDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDE
EVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDET
NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEI
RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
C*
homology100.00 (302 / 302)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tcea1 (ENSMUSG00000033813)
Transcript ID ENSMUST00000081551
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTTTG
TAGACCAGACTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGAGAT
CAAAGGCGTGGGGCACCACTGCCTGGTAATTGTCTCCTCTTTATTACCTCACAAGGAAAT
TGAAGGAAAAGGACAAAGAAAATAAATGGAAAGCATGAGTTATGGGTGAAAAATGGTACT
GAACCATTTACTTTCAATAGAAACTGATTAGTCAAAGTGGAATTCACTGTTACCCTGGGG
AGCTATACTTTATTTGATCTTAAGTTTAAAGTGTGAAAATACACATTAGTTATATGCCAC
GGCCTTCTATCATGCTTGGTGACACATGTTTAATTTGACACGACATGTGTTTTAGTTAAC
TTTTTTCATTGGAAAGAAGATATTTTGAGTCTTAAAAGTCTGTAATGTTCATTGGCTCCT
GATTTATTAACTTTCAACACAAGGAACAAAGTAAAAACAACCCCAGACACTATACATGTC
ATTTTTTTACCGTGGCTTTTTTTAAGTCACAATTCTCAAGGCCGTCGTCTTTTAAGTCGG
TTTTCATCAGCAGGCGAGATGGTTTGAATATCTGAGTCCAAGAGTGAGCCTCAGTGCTCA
TGCGCTTTAAGCCCTCGGCAATGCCTGTCCTGCGTCCCAGAGAACGCTCTGCCGGAGGGG
TTTCGATGGAACTCGTAGCAACCTACCACCTACTGCCTGATCCCTCCGGCGTGAAAGCCG
GACTCCGTCCAACTCCAACTCGCCAGCAACGCGAGTCCGGATAGGGCCGGAAGTTCCAGA
CTGCTGGGGGCGGGAATAGATTAAAAGGACAGCGCTCGCCTGAGCGAGCCACTTCTACTT
TCCAGTCTCCTGCGATCGATTCGTAGTGCCTGTGTGGCGCGCGCGGTGCTTGACTGGCAC
GGCCTAGGGGGCGGAGCGCTTATCCCTGCCGCCGCGGGCCGGGTCTGTGA
1 EXON 1 4857814 4857976 - 0 163
GGAAGGCCTAGGCCAGCGGCTTCGCGGCTTGTCCAACGTCCGCGCAGCTTCTCTCGCTTC
CCGTCCGCTGTGGCCGGGCGAGGGGAGGCCTTCCGGAGCTATGGAGGACGAGGTGGTTCG
CATTGCCAAGAAGATGGACAAAATGGTGCAGAAAAAGAATGCG
INTRON 1 - 2 4857977 4867469 9493
GTAAGCGGGCGGACCCGGGGCAGGC..........TCAATAAACTTGTTTTATTTTATAG
2 EXON 2 4867470 4867532 0 0 63
GCTGGCGCATTGGATTTGCTGAAAGAGCTTAAGAATATTCCCATGACCCTAGAATTGCTA
CAG
INTRON 2 - 3 4867533 4878026 10494
GTATGTGCTTCTGTGTTTCACACAG..........ACACTTTGTTCTTGTTGCCTTGCAG
3 EXON 3 4878027 4878132 0 1 106
TCCACAAGAATTGGAATGTCTGTCAATGCTCTTCGCAAGCAGAGCACAGATGAAGAAGTC
ACCTCTCTAGCCAAGTCTCTCATCAAATCCTGGAAAAAATTATTAG
INTRON 3 - 4 4878133 4886743 8611
GTAAAATTGATCATTGCTTGCACGT..........TTTAGGAATTTGATAAATTTTTCAG
4 EXON 4 4886744 4886831 1 2 88
ATGGACCATCAACTGATAAAGACCCTGAAGAAAAGAAAAAAGAGCCTGCAATTTCATCAC
AGAATAGCCCTGAAGCAAGAGAAGAAAG
INTRON 4 - 5 4886832 4889456 2625
GTAGCTCACTTTGTATGTAAATTGA..........TATTTATATATGTTGTGTATTTTAG
5 EXON 5 4889457 4889602 2 1 146
TAGTTCCAGCAGCAATGTAAGCAGCAGAAAGGATGAGACAAATGCTCGAGATACATATGT
TTCATCTTTTCCTCGGGCACCAAGCACTTCTGATTCTGTGCGATTAAAATGTAGGGAGAT
GCTTGCTGCAGCTCTTCGGACAGGAG
INTRON 5 - 6 4889603 4890739 1137
GTAAGTTTAGTGTTTGTTTGCTCTT..........ATGAGTTTTTCATTCTTATTCCTAG
6 EXON 6 4890740 4890796 1 1 57
ATGATTATGTTGCAATTGGAGCTGATGAAGAAGAACTGGGATCTCAGATTGAGGAAG
INTRON 6 - 7 4890797 4891914 1118
ATATCCTTTGTGTGCACATCCATAT..........TCTTTTTTCCTTAATGGCCAAGTAC
7 EXON 7 4891915 4892069 1 0 155
CTATATATCAAGAAATAAGGAATACAGACATGAAATACAAAAACAGAGTACGAAGTAGGA
TATCAAATCTTAAAGATGCAAAGAATCCAAATCTAAGGAAAAATGTGCTGTGTGGGAATA
TTCCTCCTGACCTATTTGCTAGAATGACAGCAGAG
INTRON 7 - 8 4892070 4893416 1347
GTGAGCAAGTCTGTACACAAGTGCT..........ATGGATACTGCCATTTTTGCCATAG
8 EXON 8 4893417 4893563 0 0 147
GAAATGGCTAGTGATGAGCTCAAAGAGATGAGGAAAAACCTGACCAAAGAAGCCATCAGG
GAGCATCAGATGGCCAAGACTGGTGGGACCCAGACTGACTTGTTCACTTGTGGCAAATGT
AAAAAGAAGAACTGCACTTATACACAG
INTRON 8 - 9 4893564 4894933 1370
GTTTGTGATTGAATGTGCTCTCATG..........TGATTTTCATTTAATTCTACTGTAG
9 EXON 9 4894934 4895005 0 0 72
GTGCAAACTCGTAGTGCTGATGAACCAATGACAACATTTGTTGTATGTAATGAATGTGGA
AATCGGTGGAAG
INTRON 9 - 10 4895006 4896355 1350
GTATGGCACACCCTGGCATGTATAT..........CAAAATATTTCTTTTGTCTTTGCAG
10 EXON 10 4896356 4897905 0 - 1550
TTCTGTTGAGTTTGGAAGAATTGGCAAAGTATCTGGACCATTAAGAAAAACTAATTTTGT
AATTAGCTTTAAAATTAAGCCAGGCAACTCGTTTCCTTGCAAGTGAAATTTGTAAACAAC
ATACATCTCATGGGTTGGTCTTTGTTGTTCACCTGACAGTCTGTCTTAAATGCCTTCTGT
GGTCTCAGATCAGCTGGGAGACCATAAAATAATGATATAATGTGTTGCTTTGTTTTTCTC
TTTCATAAGTTGATGTTGCATTTTATTAAATATTAACTTTTTATAGCCTAGAACACAAAA
ATTTTGTTGATCTGTTAATGCATAAAGATAAATTGCTTTTCTCATTGGTATGTACCTAAA
CATGTTAAAAGGAAAAGGCATAATATAAATTTTTAGAGTTACCAAATGTAGTGTGTATTC
CAATAGTATGTGGCCAGCTTATCAAAGTTGTGCACACAATTTGAACTAGCATATTACTTT
ACTCTTAATTACTGTGCTCACAAAGCCTCGGATCCTTGGATCTCTTGCATCTGTGACTAA
CCACAGTGATCATTTCTTTTATTTCTCATACATATATAATACCATTTTTTAATAGATTTT
ACTCTGAAAACGGACTTGGTTTATTTTATTTGACTTTGTGCTATATTTTAGTTTTATAGA
ACTCTGTTATAATTTCCTAAGCTTTTCATAAAGCCCACCACAGGTATACTTCTGATGAAT
TGTCCCCAATAGGAAGACATGCTATGAAGAAAATGTTAGTATCTTAGTAGAGTTCCTGGA
GGCAGCATGACTGTACTTGCACTTGGAAACCTACTGACCAAGGATTAAGTCTGAGAACTG
TGTAAATCATTAAGCTATGCTCTTTGTGTATGGAGGTTGCAAAAAAAGGCACCTCCTTTA
GACTGAATCTTTTGTGCTGAAATTTTTCTTACATGATGATGTCAAGCCAGCTGAAATGTA
GGCTGTAGCAAATAGTTTTACAAAACATATTTCACAATTAAGTTTTACTTTTTAAATGTG
TCCCACTTGTTTTGCTAGTAATAAGCAGTGGTTTTCACATCGTCTTCCTGACACAGATGT
TGTAATGCATATAGTAAAGGCCACTTTTATAAATTAAGTGCTTCTGCCTGTGTTCAGACT
CCTGTGTAAAAAACGTTGCACAAGCTTTGCACTCTTCTATGCTCTGCTTTGCAGACCGTT
TGTCATAACATGGAAAACAATATGTCCATGCTAAAAGGATTGGTCTGCCGGGCGTGGTGG
CCCACACCTTTAATCCCAGAACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGC
CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTC
AACCCCCCTCCCCCCCCCAAAAAAAAGATTGGTCCATGGATAATTTCTGTCACTTTAAAA
ATAAAGTACAGTTTGAAAGAATTAGTTTAAAAGTAATAAGGTTAAAATAGTCCCACTTTT
AAGTGATCCATTTTAAAATTTGTAAATCAATAAAGTTTTTTGTTGTTAAA
3' upstream sequence
CATACATGTTTTTTGTCTTTTTAAATTTTTTTATGTTGAAACAAATCTGAAAGAGTAAGC
CAGTCCCAATTAAATGGTTTCCTTATAAGAGAGCTGATGGCTTCCTCTGGCCTGAGTACA
CTGCACACATGTGGTACATAATCGTGCGTAAAAGAGTCCTGCACATAAATAATTTTTAAA
AGTTAAGATATTTTTGAGGTTGTTGAGATTGAAAAGGTAAATGTTTGTTGTTTTAGAACA
CCATAGGTCTGGGTAGAGTAGGCCTTCCTGTACCTGAGAGCGTGTCAGCAAGCACCAGAA
CATGAGTGTGCTTTGACTAGGCTCATCCACCTCTCCTTGAGTTCGCTGCTGTAAATGTCC
GAGATAGCCACATGTTACAACTTTTGGCAGGAGAATTATGGTTTGAATGAGAATGGTTCC
TATGAGCTCATATTATGAATGCTTGGTCAACAGCTATGGAACTGTTTGGGAAAAAATAAT
AGATGAGACCTTTTTGGAGGGTGTTTGCCACTGGAGCTGTTGGAGTTTGTCAAAAGACCC
TTAAAGAACACAGAGACCGCCGCCATCGCTGCAAAACGCATGAAGATGTTTATTATTCCA
CCATGTTGAGGACTCCCCTCTCAGCACGCAGGCCAGAGGAGAGACCAAGAGCAAAGAAAG
AACACACTTTTTATACCTTCGTAAGGAGCAGATTTGAGCAACAGGATTCTCATTGGTGTA
GCAAGTAACCCTTTCAGGCACTGGTTTGTATAGTGACTGCCTCTGGCCTAGTGACTCACT
TTGCCCACATGGTGGGTTATTATGATTTGGTCAGCAAAGTAATAGTACATTTTGAACTTA
TGGATCAGCTATTAACATCATGGGAATTCTTGCAACAAGATCAAAGTGGTTTGTGATCTT
TGTCAGAATTCAGTGTGGAGCAGGAGAATTGCTATTCTTATTTCTCTGAGAACAGCTATT
ATTGTTTTGGTAGCTGCAGGCTTAATCATTTTGACCGCTA..........

Sequence Detail Report

Gene Symbol (Gene ID) Tcea1 (ENSMUSG00000033813)
Transcript ID ENSMUST00000081551
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 302 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information