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Target CDS Information

Gene Symbol (Gene ID) Col5a2 (ENSMUSG00000026042)
Cross Reference
CCDS CCDS35555.1
EMBL AK132413, AK139130, AK147220, ...show all
Fantom 4631407M23, A730041E01, I420043N14, ...show all
GO GO:0001501, GO:0001503, GO:0005201, ...show all
goslim_goa GO:0003674, GO:0005198, GO:0005575, ...show all
MGI_trans_name Col5a2-001
OTTP OTTMUSP00000023677
OTTT OTTMUST00000050640
protein_id AAA37440.1, AAH43696.1, AAH55077.1, ...show all
Reactome R-MMU-1266738, R-MMU-1442490, R-MMU-1474228, ...show all
RefSeq_mRNA NM_007737.2
RefSeq_peptide NP_031763
UCSC uc007awr.1
UniParc UPI00001C21E2
Uniprot/SWISSPROT Q3U962
Vega_transcript Col5a2-001, OTTMUST00000050640
Vega_translation 179200, OTTMUSP00000023677
Definition protein_id:ENSMUSP00000083620
translation:
MMANWVGARPLLILSVLLGYCVSIKAQEQENDEYDEEIACTQHGQMYLNRDIWKPSPCQI
CVCDNGAILCDKIECPEVLNCANPITPTGECCPVCPQTGGGDTSFGRGRKGQKGEPGLVP
VVTGIRGRPGPAGPPGSQGPRGDRGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHP
GPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGVGPAGPPGEP
GEPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNTGEVGFSGSPGARGFPGAPGLPGLKGHR
GHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMP
GKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAV
GTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPK
GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQ
GERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPP
GSIGIRGQPGSMGLPGPKGSSGDLGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA
GERGEQGPPGPTGFQGLPGPPGPPGEGGKAGDQGVPGEPGAVGPLGPRGERGNPGERGEP
GITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGPKGDRGGI
GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPT
GAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLKGGRGTQ
GPPGATGFPGSAGRVGPPGPAGAPGPAGPAGEPGKEGPPGLRGDPGSHGRVGDRGPAGPP
GSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPT
GATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQ
GAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQK
GHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVR
GSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDENMPDPLPEFTEDQAAPDDTN
KTDPGIHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAED
AIKVYCNMETGETCISANPASVPRKTWWASKSPDNKPVWYGLDMNRGSQFTYGDYQSPNT
AITQMTFLRLLSKEASQNLTYICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFR
YTVLQDTCSKRNGNVGKTIFEYRTQNVARLPIIDVGPVDIGNADQEFGLDIGPVCFM

Chromosome 1
Length
Position(start - end)
126,829
45,376,084 - 45,502,914
Orient to Chromosome minus
Link Location : (1:45376084-45502914)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Col5a2 (ENSMUSG00000026042)
Transcript ID ENSMUST00000086430
Reports
substitution
cSNPs7
Insertion84
Deletion94
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num1
synonymous substitutions 45378415 (p.Thr1333Thr), 45391118 (p.Gly907Gly), 45400863 (p.Gly679Gly), 45413506 (p.Arg354Arg), 45422425 (p.Pro233Pro), 45436406 (p.Thr123Thr),
non-synonymous substitutions 45376108 (p.Asp1490Glu),
B6 transcript
(ENSMUST00000086430)
MMANWVGARPLLILSVLLGYCVSIKAQEQENDEYDEEIACTQHGQMYLNRDIWKPSPCQI
CVCDNGAILCDKIECPEVLNCANPITPTGECCPVCPQTGGGDTSFGRGRKGQKGEPGLVP
VVTGIRGRPGPAGPPGSQGPRGDRGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHP
GPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGVGPAGPPGEP
GEPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNTGEVGFSGSPGARGFPGAPGLPGLKGHR
GHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMP
GKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAV
GTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPK
GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQ
GERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPP
GSIGIRGQPGSMGLPGPKGSSGDLGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA
GERGEQGPPGPTGFQGLPGPPGPPGEGGKAGDQGVPGEPGAVGPLGPRGERGNPGERGEP
GITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGPKGDRGGI
GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPT
GAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLKGGRGTQ
GPPGATGFPGSAGRVGPPGPAGAPGPAGPAGEPGKEGPPGLRGDPGSHGRVGDRGPAGPP
GSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPT
GATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQ
GAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQK
GHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVR
GSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDENMPDPLPEFTEDQAAPDDTN
KTDPGIHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAED
AIKVYCNMETGETCISANPASVPRKTWWASKSPDNKPVWYGLDMNRGSQFTYGDYQSPNT
AITQMTFLRLLSKEASQNLTYICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFR
YTVLQDTCSKRNGNVGKTIFEYRTQNVARLPIIDVGPVDIGNADQEFGLDIGPVCFM*
MSMv4 transcript
MMANWVGARPLLILSVLLGYCVSIKAQEQENDEYDEEIACTQHGQMYLNRDIWKPSPCQI
CVCDNGAILCDKIECPEVLNCANPITPTGECCPVCPQTGGGDTSFGRGRKGQKGEPGLVP
VVTGIRGRPGPAGPPGSQGPRGDRGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHP
GPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGVGPAGPPGEP
GEPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNTGEVGFSGSPGARGFPGAPGLPGLKGHR
GHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMP
GKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAV
GTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPK
GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQ
GERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPP
GSIGIRGQPGSMGLPGPKGSSGDLGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA
GERGEQGPPGPTGFQGLPGPPGPPGEGGKAGDQGVPGEPGAVGPLGPRGERGNPGERGEP
GITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGPKGDRGGI
GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPT
GAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLKGGRGTQ
GPPGATGFPGSAGRVGPPGPAGAPGPAGPAGEPGKEGPPGLRGDPGSHGRVGDRGPAGPP
GSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPT
GATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQ
GAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQK
GHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVR
GSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDENMPDPLPEFTEDQAAPDDTN
KTDPGIHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAED
AIKVYCNMETGETCISANPASVPRKTWWASKSPDNKPVWYGLDMNRGSQFTYGDYQSPNT
AITQMTFLRLLSKEASQNLTYICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFR
YTVLQDTCSKRNGNVGKTIFEYRTQNVARLPIIDVGPVDIGNADQEFGLEIGPVCFM*
homology99.93 (1498 / 1498)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Col5a2 (ENSMUSG00000026042)
Transcript ID ENSMUST00000086430
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTAGTCTGCCATACTCCTTCCTCTATTCAGTGTGTCTCGGAGCACCTGTT
CAGTGCTGAGTAACTATGAACGGTTGAGTCACACATGACATGTTATGTGGGGCTTGATCC
AGATCCCCCAGAATGCACACTATCAAATGAATTAGACTGTCAAAAACACTGAGGGCGTTT
AAATATGTCAAGCTTGAGTAGCACACAAAGTTAATGCCTTGCTCTTTACAGAAATGTGCA
GCTAGGACTACCACATTCCGTGGAAAGCTGGTGTGGGGCTCATAACAGCATCATTCACTT
TTATGTAGCTCTTTGTAATTTAGAATCTAGTTAACAGCATATTGCTCAGTTTAGTGTCAC
CAGATCCTGCACACTGGTCAGGCCAAAGCTCCTTTTCTAACAACAACAACAAAAAAATTT
GGACAGATAAGGACTATGTATAAATTCACAAAATTGGTGAGTTGGCAGATCTGATATTGG
AACCTACCCTTTCTGAGACTTAAACCAGTGTGTTTTCCTCCCTCCACCAGCTTAGTGAAC
TTATTTGTTTTTTAACACAATAGCATGCTCTGTGACGAGGATAACGTATAGATGTGCCTA
CTAAAAAGATGTGGAAATGACTCAATGTAAAGTATCTCAAGTTCATTTTGTATTGGCCAT
ATTCTGCCTCCTTTCTTCCACAATCCTCTCAGAGCATAGGAAAGGGAGGAGGATGAAAAT
TGGGACAAGAATCCTTCCTCTATTGTCAAAAGAAAGGGTTAAAAAAGTGACGTTTTAAAG
GCTTAAATGGCGAAGAGAATTCTGAATTATTTAAGTGCAAAAGAAAAAAAAATCCACTAA
AAGGCTGTAATCCTCCCTAAAGCTTTTTTAGTGTCTCTGGAAAAAGTCAGTGGGTGTGTG
TCTGGGGAAGGGTTGGGGAGGGTGGATTAGACTCCTTCTAATAGGCTTTCTTTAAAAAAA
GAAGAAAAGAAAACACACACACACTCAAACAGAAGGAGAAATAAAAGTTT
1 EXON 1 45,502,821 45,503,282 - 1 462
GTCTCTGTTGAGAAGCTTCCTCTGCGCTTAAAATCTACAAGAAGCACTGAAAACTCAAGT
CGCAGAGGCGCGCGCTCTGATTTGGTTGTTTACCATCAATCAGACGGTTGCTTGGCAGAC
ACTGGATGGTTATGAGCCTGAACAAGCTGAAAGGGGCAGGAAAAGAAGTGGAGGCAGCAT
TCTTCCTATTTAAAGCTGCACCGCTTGAAAAAAGTTTTCGCAGACTGTGCCGGACCTGGT
GCTGAAACAGACTGAAGCAGCGCGGGGACTGGTGCTGAAAAAGAGCCCCCAGCGGAATTC
ATGGTGCTACAGTGACCTCAGTATCTACTCTTCGATCCCAGGAGGACCCACATGTCTCAT
ATTTAGACATGATGGCAAACTGGGTGGGAGCAAGACCTCTCCTCATTCTTTCTGTTTTAT
TAGGGTACTGTGTCTCAATAAAAGCCCAGGAACAAGAGAATG
INTRON 1 - 2 45,442,869 45,502,820 59,952
GTGAGTTTGCCTTTTGCTTTGCTTA..........CAACATCTTTTTGTTTTTATTTCAG
2 EXON 2 45,442,647 45,442,868 1 1 222
ATGAATATGATGAAGAAATAGCCTGTACTCAACATGGACAGATGTATTTAAATAGAGACA
TTTGGAAACCTTCTCCATGTCAGATCTGTGTCTGTGACAATGGTGCCATTCTTTGTGACA
AGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCCTATAACACCCACTGGGGAGTGCT
GTCCGGTGTGCCCACAAACTGGAGGTGGAGATACTAGTTTTG
INTRON 2 - 3 45,438,884 45,442,646 3,763
GTAAGAATTCTCAAAGCTGTTTCAG..........AATGACATTTTCTTTCTTTTTGTAG
3 EXON 3 45,438,870 45,438,883 1 0 14
GTAGAGGAAGAAAG
INTRON 3 - 4 45,437,497 45,438,869 1,373
GTGAGTTTTACTTAGCATGATTCCT..........CTTTTCTTTTAAACAATCTTCCTAG
4 EXON 4 45,437,464 45,437,496 0 0 33
GGACAAAAAGGAGAACCAGGATTAGTGCCTGTT
INTRON 4 - 5 45,436,412 45,437,463 1,052
GTAAGTATTGTATATTTGTATGTTA..........ACAAATGTCCTTCTTCCGTGTTTAG
5 EXON 5 45,436,379 45,436,411 0 0 33
GTAACGGGTATACGCGGTCGTCCAGGACCTGCA
INTRON 5 - 6 45,434,946 45,436,378 1,433
GTAAGTATTTTTCTCCAGTATTTCT..........CCTCATTTATGCTCTTATGCTCTAG
6 EXON 6 45,434,892 45,434,945 0 0 54
GGCCCCCCAGGATCACAAGGACCAAGAGGGGACCGAGGCCCTAAAGGAAGACCT
INTRON 6 - 7 45,430,009 45,434,891 4,883
GTAAGTGTACATGAAATGAGCTGAT..........AATGACAGCTGGTTTTCTTTTCTAG
7 EXON 7 45,429,898 45,430,008 0 0 111
GGTCCTCGTGGTCCTCAGGGAATTGATGGAGAGCCAGGTGTGCCTGGTCAGCCAGGTGCT
CCAGGGCCTCCTGGGCACCCCTCTCACCCAGGACCTGATGGCATGAGCAGG
INTRON 7 - 8 45,427,066 45,429,897 2,832
GTGAGTTGTGTGTTCTGGTTAGTGT..........ACATTGTCAACACTTTATTTTATAG
8 EXON 8 45,426,988 45,427,065 0 0 78
CCTTTTTCAGCTCAGATGGCTGGGCTGGATGAAAAATCTGGACTTGGAAGTCAAGTAGGA
CTCATGCCTGGCTCTGTG
INTRON 8 - 9 45,423,727 45,426,987 3,261
GTAAGCATGAAAGTTATGGATAAAG..........TAACTTTTTCCCACTTGTTTTTAAG
9 EXON 9 45,423,682 45,423,726 0 0 45
GGTCCTGTTGGCCCAAGAGGACCTCAGGGTTTACAAGGACAGCAA
INTRON 9 - 10 45,422,440 45,423,681 1,242
GTAAGTGTTTTTATAATTAATTTAT..........ATTTATCATTTGTTCTCAATTTTAG
10 EXON 10 45,422,386 45,422,439 0 0 54
GGTGGTGTGGGACCTGCAGGACCTCCTGGTGAGCCTGGCGAGCCTGGACCAATG
INTRON 10 - 11 45,421,998 45,422,385 388
GTAAATATGGAATAAGTATGTCAGC..........TTTTTTTTTTTTTCTAATTTCTTAG
11 EXON 11 45,421,944 45,421,997 0 0 54
GGTCCAATTGGTTCTCGTGGACCAGAGGGCCCACCTGGGAAGCCCGGAGAAGAT
INTRON 11 - 12 45,421,275 45,421,943 669
GTAAGTTTCTATAGCACATTGCTTT..........CTCTCACCCCCTCTTTCACATTAAG
12 EXON 12 45,421,221 45,421,274 0 0 54
GGTGAACCTGGAAGAAATGGGAATACAGGTGAAGTGGGATTCTCAGGATCACCA
INTRON 12 - 13 45,418,553 45,421,220 2,668
GTAAGTAATGGTTATCAGTATGTTG..........ATGTGCCTATGTACCTTTCTCTCAG
13 EXON 13 45,418,499 45,418,552 0 0 54
GGTGCTCGAGGCTTCCCTGGTGCTCCTGGTCTCCCTGGCTTGAAAGGTCACAGA
INTRON 13 - 14 45,417,642 45,418,498 857
GTAAGTTGTCTTATTTTCTGTTTTT..........TATGAATTTATATTGTCCTTTTCAG
14 EXON 14 45,417,588 45,417,641 0 0 54
GGACACAAAGGTCTTGAAGGCCCCAAAGGTGAAATTGGAGCACCTGGTGCTAAG
INTRON 14 - 15 45,416,972 45,417,587 616
GTTTGTCTAACACCAAACTTAACTT..........TGATGTATCCTCACTTCTGCTTTAG
15 EXON 15 45,416,927 45,416,971 0 0 45
GGTGAAGCTGGCCCCACTGGTCCAATGGGTGCTATGGGCCCTCTG
INTRON 15 - 16 45,414,802 45,416,926 2,125
GTAAGCATCACATTATTTGTTTCTT..........TTTTTTCTTCCCATCTTATGTATAG
16 EXON 16 45,414,748 45,414,801 0 0 54
GGACCAAGAGGAATGCCAGGAGAGAGGGGAAGACTTGGGCCACAGGGTGCTCCT
INTRON 16 - 17 45,413,515 45,414,747 1,233
GTAAGTATAGATCATGTATTTATTG..........AATTCTCCCTTTTTCTGTAAATTAG
17 EXON 17 45,413,470 45,413,514 0 0 45
GGAAAACGAGGTGCCCACGGTATGCCTGGAAAACCTGGACCAATG
INTRON 17 - 18 45,411,488 45,413,469 1,982
GTGAGTTCTGTTATTTTTCATAATA..........ACTTTACAATTTTCCCCACACTTAG
18 EXON 18 45,411,434 45,411,487 0 0 54
GGTCCTCTTGGGATACCTGGCTCTTCCGGTTTTCCAGGAAATCCTGGAATGAAG
INTRON 18 - 19 45,407,801 45,411,433 3,633
GTAAGTTTGTGACAGTACTTGATGA..........AACATTTTCTTTTCCATTCCTTTAG
19 EXON 19 45,407,702 45,407,800 0 0 99
GGAGAAGCAGGTCCTACTGGAGCCCGAGGCCCTGAAGGTCCTCAGGGGCAGAGAGGTGAA
ACTGGGCCACCTGGTCCAGCTGGCTCTCAGGGTCTTCCT
INTRON 19 - 20 45,407,278 45,407,701 424
GTAAGTGCCTGACATATCTAGGAGC..........ATAATATGTTTCATGTATGTTTTAG
20 EXON 20 45,407,233 45,407,277 0 0 45
GGTGCAGTGGGGACTGATGGTACACCTGGCGCCAAAGGCCCCACA
INTRON 20 - 21 45,407,121 45,407,232 112
GTAAGTACCAGAACTTATGTCAGGT..........ATCTTGTCATCCTTGTCATTGGTAG
21 EXON 21 45,407,022 45,407,120 0 0 99
GGCTCTGCAGGAACCTCTGGCCCTCCTGGCTTGGCAGGGCCCCCTGGGTCTCCTGGCCCT
CAAGGCAGTACTGGACCTCAGGGAATCCGAGGACAATCG
INTRON 21 - 22 45,406,598 45,407,021 424
GTAATATCTGTTAAATTATGGCTTA..........TTTAACTGATGGTATTTTCTTTTAG
22 EXON 22 45,406,544 45,406,597 0 0 54
GGTGATCCAGGAGTTCCAGGTTTCAAAGGAGAAGCTGGTCCAAAGGGAGAACCA
INTRON 22 - 23 45,406,348 45,406,543 196
GTAAGCCTTAATTATTTTAATGACA..........GAGACCTGTCCTTCTGTTTTAATAG
23 EXON 23 45,406,240 45,406,347 0 0 108
GGGCCACATGGTATTCAGGGTCCCATTGGTCCACCTGGTGAAGAAGGCAAAAGAGGTCCT
CGGGGTGATCCAGGCACAGTTGGTCCTCCAGGACCAATGGGAGAAAGG
INTRON 23 - 24 45,405,294 45,406,239 946
GTAAACGTGAACAATACAAATCCTG..........AAAACTGCATTTTGGTCCATTGTAG
24 EXON 24 45,405,240 45,405,293 0 0 54
GGCGCTCCTGGCAATCGTGGTTTTCCAGGGTCTGATGGTTTACCTGGACCAAAG
INTRON 24 - 25 45,404,832 45,405,239 408
GTAAGATCACACCAAAGCTGACATT..........GCCCTATCTGTCTTTTTTGGAGCAG
25 EXON 25 45,404,733 45,404,831 0 0 99
GGTGCTCAGGGAGAGCGTGGTCCTGTAGGTTCTTCGGGGCCTAAAGGAGGCCAGGGAGAT
CCAGGACGTCCAGGAGAACCTGGGCTTCCAGGTGCTCGG
INTRON 25 - 26 45,404,255 45,404,732 478
GTAAGAAGCCTATGGTTATATGCTA..........ATTAACAGTTGATTTTCATTGTTAG
26 EXON 26 45,404,201 45,404,254 0 0 54
GGTCTGACAGGAAATCCTGGTGTTCAAGGTCCTGAAGGAAAACTTGGGCCTTTG
INTRON 26 - 27 45,403,520 45,404,200 681
GTAAGAAATTTAAATAATTTTATCA..........TTCTTGCCTGCTGTCAAACCTGCAG
27 EXON 27 45,403,421 45,403,519 0 0 99
GGTGCTCCTGGGGAAGATGGTCGGCCAGGTCCTCCAGGCTCCATTGGGATCAGAGGACAG
CCTGGAAGCATGGGCCTTCCAGGCCCCAAAGGTAGCAGT
INTRON 27 - 28 45,403,314 45,403,420 107
GTGAGTACAATGAACAACGTTTAAC..........AGAATACTGTTTATTTATTCTTTAG
28 EXON 28 45,403,260 45,403,313 0 0 54
GGTGACCTTGGAAAACCAGGAGAAGCAGGAAATGCTGGTGTGCCTGGGCAAAGG
INTRON 28 - 29 45,403,170 45,403,259 90
GTAGGCATTCATTTTCTGGTATTGA..........ACCTAAAATGTCCATGTGATCCTAG
29 EXON 29 45,403,116 45,403,169 0 0 54
GGGGCTCCTGGCAAAGATGGAGAAGTTGGTCCTTCAGGCCCTGTGGGACCTCCG
INTRON 29 - 30 45,402,133 45,403,115 983
GTATGTGACTTTCTTTGATGATATT..........TCATGCTTTTCTTTCTTTTACTTAG
30 EXON 30 45,402,079 45,402,132 0 0 54
GGCCTAGCTGGGGAAAGAGGAGAGCAGGGACCTCCAGGCCCCACTGGCTTTCAG
INTRON 30 - 31 45,400,875 45,402,078 1,204
GTATGCGCTAATTTAAGTTTTCACT..........GTTTTACTTGTCATTATTGTTTTAG
31 EXON 31 45,400,821 45,400,874 0 0 54
GGACTTCCTGGGCCTCCAGGGCCACCTGGAGAAGGTGGAAAGGCTGGTGATCAA
INTRON 31 - 32 45,396,495 45,400,820 4,326
GTAAGTTTTTAAATAATAATATCAG..........TTCTCTTTTTTTGAAACCTGTTTAG
32 EXON 32 45,396,450 45,396,494 0 0 45
GGTGTTCCTGGAGAGCCTGGAGCAGTTGGCCCATTAGGACCTCGG
INTRON 32 - 33 45,396,160 45,396,449 290
GTAGGTATTTTCTTTTATGTGATTC..........ATTTCACATCCTGATGACATTGTAG
33 EXON 33 45,396,061 45,396,159 0 0 99
GGAGAAAGAGGGAATCCTGGAGAAAGAGGAGAGCCAGGGATAACTGGACTGCCTGGGGAG
AAAGGCATGGCTGGAGGACATGGCCCTGATGGTCCAAAG
INTRON 33 - 34 45,394,829 45,396,060 1,232
GTGAGTGCAGTCCTGATTTGGGCTT..........AATATTGTCTCATTATTTATTTTAG
34 EXON 34 45,394,721 45,394,828 0 0 108
GGCAACCCAGGTCCAACTGGGACCATTGGAGACACAGGGCCACCAGGTCTTCAGGGCATG
CCAGGAGAAAGAGGAATTGCAGGAACACCTGGCCCTAAGGGTGACCGA
INTRON 34 - 35 45,394,436 45,394,720 285
GTAAGTCCTGTCTTTTATTAACTAA..........TCTTTGTTATTTTGTATTTTCCCAG
35 EXON 35 45,394,382 45,394,435 0 0 54
GGTGGCATAGGAGAGAAAGGTGCTGAAGGAACAGCAGGAAATGACGGGGCAAGG
INTRON 35 - 36 45,393,107 45,394,381 1,275
GTAAGAGAAAGGGGAAAGGGTATTT..........ATACTTATGTTCTTTTAATTAACAG
36 EXON 36 45,393,053 45,393,106 0 0 54
GGTCTTCCAGGTCCCTTGGGACCTCCAGGTCCTGCAGGCCCTACTGGAGAAAAG
INTRON 36 - 37 45,392,869 45,393,052 184
GTAAGTTAGAAGGTATCAGTGTGCA..........TAGCTATGTAAAATCTACTTTGTAG
37 EXON 37 45,392,815 45,392,868 0 0 54
GGTGAACCTGGTCCTAGAGGCTTAGTTGGCCCTCCTGGCTCCCGTGGCAATCCT
INTRON 37 - 38 45,392,358 45,392,814 457
GTAAGTGAAAACCTTTTTTTGTTTT..........TTCAATAGAACTTGTCTCCTTTTAG
38 EXON 38 45,392,304 45,392,357 0 0 54
GGTTCTCGTGGTGAAAATGGTCCAACTGGAGCTGTTGGTTTTGCTGGACCCCAG
INTRON 38 - 39 45,391,932 45,392,303 372
GTAAAATTTCCAAGTATTTCTAACT..........AATATGTTTTCTCACTTGCTTTTAG
39 EXON 39 45,391,824 45,391,931 0 0 108
GGTCCCGATGGACAGCCTGGTGTCAAGGGTGAGCCTGGAGAGCCAGGACAGAAGGGAGAT
GCTGGGTCTCCTGGACCCCAAGGGCTAGCAGGATCACCTGGCCCCCAT
INTRON 39 - 40 45,391,716 45,391,823 108
GTGAGTTATCAAAAATTAAAAAAGA..........AGTGGTCTTTTGTTCTTCCATTTAG
40 EXON 40 45,391,662 45,391,715 0 0 54
GGTCCACATGGTGTTCCTGGACTGAAAGGCGGTAGAGGAACCCAGGGTCCACCT
INTRON 40 - 41 45,391,130 45,391,661 532
GTGAGTCTTTTTTTTTTTTTTTTCT..........TAACCAATGTATCTGTTGTTCCCAG
41 EXON 41 45,391,076 45,391,129 0 0 54
GGTGCTACAGGATTTCCTGGTTCTGCTGGCAGAGTTGGGCCTCCAGGCCCTGCT
INTRON 41 - 42 45,390,194 45,391,075 882
GTAAGTCTACTTAGATCTACACCAT..........ATTGCTTTTTTCTGTATGATACCAG
42 EXON 42 45,390,032 45,390,193 0 0 162
GGAGCTCCAGGACCTGCAGGGCCCGCAGGAGAACCTGGGAAGGAAGGACCTCCTGGTCTT
CGTGGTGACCCTGGCTCTCATGGGCGAGTGGGAGATAGAGGACCAGCTGGCCCACCTGGT
AGCCCAGGAGATAAAGGGGACCCAGGAGAAGATGGACAACCT
INTRON 42 - 43 45,389,480 45,390,031 552
GTAAGTGGGCATCTGTTTCACTCCA..........AGTAACTATCATCTCTTACCACTAG
43 EXON 43 45,389,372 45,389,479 0 0 108
GGTCCAGATGGTCCTCCTGGTCCCGCTGGTACCACTGGGCAAAGAGGAATTGTTGGAATG
CCCGGACAACGTGGGGAACGAGGAATGCCTGGCCTTCCTGGCCCAGCG
INTRON 43 - 44 45,388,321 45,389,371 1,051
GTAAGTAGTTGTTTTGGTCAATGTT..........TTACCTACTTGTGTTTTAATTTCAG
44 EXON 44 45,388,213 45,388,320 0 0 108
GGTACACCAGGAAAAGTAGGACCAACTGGTGCGACAGGAGATAAAGGTCCCCCTGGACCT
GTAGGACCTCCAGGTTCCAATGGTCCTGTAGGAGAACCTGGGCCAGAA
INTRON 44 - 45 45,386,887 45,388,212 1,326
GTGAGTGCTACAGTCCTTAACAAAA..........CTGTGTCTAACACTATTCTTTTTAG
45 EXON 45 45,386,833 45,386,886 0 0 54
GGTCCGGCTGGTAATGATGGTACCCCAGGACGGGATGGTGCTGTTGGAGAACGG
INTRON 45 - 46 45,385,070 45,386,832 1,763
GTAAGTTGATTAAAACATTAGAACC..........AGAATAATATTATATTTTTTGTCAG
46 EXON 46 45,384,962 45,385,069 0 0 108
GGTGACCGTGGAGACCCCGGGCCTGCTGGTCTACCAGGCTCTCAGGGTGCCCCTGGAACT
CCTGGCCCTGTTGGTGCCCCTGGAGATGCAGGACAAAGAGGAGAGCCA
INTRON 46 - 47 45,384,454 45,384,961 508
GTAAGAATGTCAACTTCACATTGAC..........CCAAGTTTTATGAAAAATTTTCTAG
47 EXON 47 45,384,400 45,384,453 0 0 54
GGTTCTCGAGGCCCTGTAGGACCACCTGGTCGAGCTGGAAAGCGTGGTTTACCT
INTRON 47 - 48 45,383,699 45,384,399 701
GTAAGTTCTATGTTTTCTGAACAAA..........AATGTTCATGATTGTCTATTCCCAG
48 EXON 48 45,383,591 45,383,698 0 0 108
GGACCACAAGGACCTCGAGGTGACAAGGGTGACAATGGAGACAGAGGTGACCGAGGTCAG
AAAGGCCACAGAGGGTTCACTGGCCTGCAGGGTCTTCCTGGACCTCCT
INTRON 48 - 49 45,383,221 45,383,590 370
GTAAGTTATTTCTTAAATACTGTAC..........CACTTTCATTAATCTTCCTCTGTAG
49 EXON 49 45,383,167 45,383,220 0 0 54
GGTCCAAATGGTGAACAAGGAAGTGCTGGCATTCCTGGTCCTTTCGGTCCAAGA
INTRON 49 - 50 45,382,224 45,383,166 943
GTAAGTAACAGAAACTATTAAGTTT..........AAAATACATTTTTGTGTTCTGACAG
50 EXON 50 45,382,116 45,382,223 0 0 108
GGTCCTCCAGGACCAGTAGGTCCTTCAGGAAAGGAAGGAAACCCTGGGCCACTTGGACCA
ATTGGACCTCCTGGTGTGCGGGGCAGTGTAGGAGAAGCAGGACCAGAG
INTRON 50 - 51 45,380,292 45,382,115 1,824
GTAAGGTCAAAAGAGTTTGCATGGA..........GTCTTTCCAATTTCTCCTTAATTAG
51 EXON 51 45,380,000 45,380,291 0 1 292
GGTCCTCCTGGTGAACCTGGGCCTCCTGGCCCTCCAGGTCCCCCTGGCCATCTTACTGCT
GCTCTTGGTGATATCATGGGACACTATGATGAGAACATGCCAGATCCACTTCCAGAGTTT
ACGGAAGACCAGGCAGCTCCAGATGACACAAACAAAACAGACCCTGGGATCCATGTTACC
CTGAAGTCTCTCAGTAGTCAGATTGAAACCATGCGTAGCCCTGATGGTTCCAAGAAACAC
CCAGCCCGCACTTGTGATGATTTAAAGCTTTGCCATCCCACAAAGCAGAGCG
INTRON 51 - 52 45,378,495 45,379,999 1,505
GTGAGTAGACAGGGGCCTGTTTGAG..........CACATATTTCTATCTTGGAAAATAG
52 EXON 52 45,378,307 45,378,494 1 0 188
GTGAATATTGGATTGATCCTAACCAGGGATCAGCTGAAGATGCAATCAAAGTTTACTGCA
ATATGGAAACAGGAGAGACGTGTATTTCAGCAAACCCAGCCAGTGTTCCACGTAAAACCT
GGTGGGCCAGCAAATCCCCTGACAATAAGCCTGTGTGGTACGGTCTTGACATGAATAGAG
GATCTCAG
INTRON 52 - 53 45,376,879 45,378,306 1,428
GTGAATTAACATATTTACCTAGAAT..........ACATAAATTTCTTTTATTTCTCTAG
53 EXON 53 45,376,639 45,376,878 0 0 240
TTCACATATGGAGATTACCAGTCTCCTAACACAGCTATCACTCAGATGACCTTTTTGCGT
CTTTTATCAAAAGAAGCCTCGCAGAACCTTACTTACATCTGTAGGAACACTGTTGGATAT
ATGGATGATCAAGCTAAAAACCTCAAGAAAGCTGTGGTCCTTAAAGGGTCAAACGACTTA
GAAATAAAAGGAGAAGGAAACATCAGATTCAGATACACAGTTCTTCAAGACACCTGCTCT
INTRON 53 - 54 45,376,231 45,376,638 408
GTAAGTGCCTTTTGGACTATGCTTT..........TATCCATTGTCCTCTTGAATTCCAG
54 EXON 54 45,374,321 45,376,230 0 - 1,910
AAGCGAAATGGAAATGTAGGCAAAACTATCTTTGAATACAGAACACAGAATGTGGCCCGC
TTGCCCATCATAGATGTTGGTCCTGTGGATATTGGCAATGCAGACCAGGAATTTGGCCTT
GAAATTGGGCCAGTTTGTTTCATGTAACAGAAGCCCAGACGTATCGACAATGAGCACTAC
CATCAATGACCACCACAAGAACTGTGACTGTTTAAAGTTCATCCTGAGACTCTTGAAGTA
ATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACCTTATCCTT
CAGAATATTTATTTTACTTACAATCCTCAAGTTTAATTGACTTAATTTTTTCAATATGGC
CGTTTAGATTAAAGCAACCAACGACAATGACCATCTTTACAAAAAGTAAACTGATCAAAA
AATAAATATGTTTTCATCAATTCATTTCACTGTAATGAATACGTTGCTTAGTATTTATGA
GAAAATTCTTCTTCCTAGCAGGTAGCTTACGTGATGGGGTATGTAAAGCCTCAGCACGTG
TTGATTTTGCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATT
GTCAGAACATCAGTGACAAATGAAGACCCCCATGCATGTCTTAATATTATACTAACATTA
TAGAAAAAATTAAGGTGAATATAACACGTTTCCACTGTCTTAAATGATATCTTTAAATAA
CATGTAGCCATTGACTTTTAGGAGGAAAAAAATCCATAAAATTGCTTCAACTTTACAATT
TATTTTGCAAAGACTGATACAGTTAGAGTTTTTTCCTCATTCAAATTTAAGGGTAACATT
TTCTTTGTGTTGTAATCTTTCAATACAGATAGAAGTTATATTTGTGGTTTCTTATGTAAG
AAGATATTGGATGAAATTAAAAAAAATTACCCACACAATTTTCTAACACACATGCCCAGT
AATGAATGTTAAGACTCTCCCACAGTCACAGTCTCATTTTCCTGAAGCATATCATAAGAA
ATGAACAAGAAGTCCAGCATTATAATGATCACTCAAATAAAATGTGAGGATTGGAATTAG
AACATTCATAAGAAAATATGACCCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAG
CTGGGATAGATTTCCTGTTCTTGTTTATTTTTAGGTGTTGAAAGGTGCTATGCTTCTGTT
GTTATTCCAAGACTGGAGATAGGCAGGGTTAAAAAAATTATAACTTTTCTTTTAATGATG
GTGCTAAAATTATTTCTATAAAATTCTTTAAAGATAAAGATTGTTTCATCAATGCTATTT
GTGAACACAGAACTGTTAAACATCCCATTTGAGAGATAGATCATTATTCCTGGGTCTTTT
AACTGTTCCTTTCATGATGTATTTAGAACATTGTGTAATACTTGCAAGTGTCTTAACATT
GGACACATAGGTCCCCTTGTGTCTCAAGATTTTTTCCTTAATTGCAGTTGTTTGCTCCAT
TGTAGTTTCTTACTTAAATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTT
GATCATGTATCTCTGCAAAGCATCGAATTAAATGCATGCTTCTGTCATGTCAGTCATCTT
CAGTTTGTTGAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAG
ATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACGATGCAACAAGTACCTACCATTTTG
TCTGCACTGGCTTAAAAATAAACCTATCTGTAACATTGCCTGCAAAGGCATGTTGACATC
AATGAAGACAGTCTATGCGTTAGAAAACTCAGGCTAGTGATTGGTAAAGAGTAAAGGAAA
TGAAAAATCCATTATTGAATAAACTAATAATAAAACATGCCTCAATGTGT
3' upstream sequence
ATCAAGTATGAAATTAGCTTGAACAGTACCAGAGTTTCATTTTCAATGTCTATTTCGTAG
CTTCATTTTTTTGAGCCCCATATCTTTTTTTTTTGGTTTTGTTAATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATGTTATGTATTTTCCTCAATT
ACATTTCCAATGCTATCCCAAAAGTCCCCCACACCCTCCCCCCCCCCAACTCCCCTACCC
ACCCATTCCCATTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCCT
ATCCAATGGGTCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAG
CTAGAGTCAGGTAGCCCCATATGTTGAATTTGACTCTATAACTAAGGATACTTGTACATT
TTTCTTGTATTTTCTTTATGTCCAACTTGTATAGGTTGTACAGGTTCATATAGGTAGTCC
AGAAACATATCTTTATTTCCGTCAAATGAAAATACTAATAGTTTCTAGTCATAGAAATAC
CAGCTCTGAAGCATCAGGGATGCTTCTAGGATTCCTGACATTAGACCAAAGCCTCAAATC
TTACCCTGTGTTACAGGTACACAGCTTTCTCCATAGCGGTGGGTTTCTTTACCTGTATGA
CCTAGAGGTAGCTCAGATGCTAGATAATCAAAGGCAAATCAATATACATCTGGGAGGACA
GTGGTATCACTTTATTAAAAATAGAAATAAATATTCTTGCAAATTACTTTAAATGCAGTT
TTAAAAAAAAGCAAAGATGTCAAAGAAAGCAAGAGCGATGCTGAAACATCATTATGTAAT
TTGATAAATGCTGGCTGTGTTTATTGCTATTTGTTCTAATTTTAAAAAGATTTAATTTTA
TAAATTACAAACATCATCCTGTCTCCCAAAATGATATTATAGGCCTGTTTCAGTTGGGGT
TTTGATTAGTGTGATACAACACTATGACCAAAATCAGCTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Col5a2 (ENSMUSG00000026042)
Transcript ID ENSMUST00000086430
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1498 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information