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Target CDS Information

Gene Symbol (Gene ID) Col5a2 (ENSMUSG00000026042)
Cross Reference
CCDS CCDS35555.1
EMBL AK132413, AK139130, AK147220, ...show all
Fantom 4631407M23, A730041E01, I420043N14, ...show all
GO GO:0001501, GO:0001503, GO:0005201, ...show all
goslim_goa GO:0003674, GO:0005198, GO:0005575, ...show all
MGI_trans_name Col5a2-001
OTTP OTTMUSP00000023677
OTTT OTTMUST00000050640
protein_id AAA37440.1, AAH43696.1, AAH55077.1, ...show all
Reactome R-MMU-1266738, R-MMU-1442490, R-MMU-1474228, ...show all
RefSeq_mRNA NM_007737.2
RefSeq_peptide NP_031763
UCSC uc007awr.1
UniParc UPI00001C21E2
Uniprot/SWISSPROT Q3U962
Vega_transcript Col5a2-001, OTTMUST00000050640
Vega_translation 179200, OTTMUSP00000023677
Definition protein_id:ENSMUSP00000083620
translation:
MMANWVGARPLLILSVLLGYCVSIKAQEQENDEYDEEIACTQHGQMYLNRDIWKPSPCQI
CVCDNGAILCDKIECPEVLNCANPITPTGECCPVCPQTGGGDTSFGRGRKGQKGEPGLVP
VVTGIRGRPGPAGPPGSQGPRGDRGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHP
GPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGVGPAGPPGEP
GEPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNTGEVGFSGSPGARGFPGAPGLPGLKGHR
GHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMP
GKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAV
GTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPK
GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQ
GERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPP
GSIGIRGQPGSMGLPGPKGSSGDLGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA
GERGEQGPPGPTGFQGLPGPPGPPGEGGKAGDQGVPGEPGAVGPLGPRGERGNPGERGEP
GITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGPKGDRGGI
GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPT
GAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLKGGRGTQ
GPPGATGFPGSAGRVGPPGPAGAPGPAGPAGEPGKEGPPGLRGDPGSHGRVGDRGPAGPP
GSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPT
GATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQ
GAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQK
GHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVR
GSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDENMPDPLPEFTEDQAAPDDTN
KTDPGIHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAED
AIKVYCNMETGETCISANPASVPRKTWWASKSPDNKPVWYGLDMNRGSQFTYGDYQSPNT
AITQMTFLRLLSKEASQNLTYICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFR
YTVLQDTCSKRNGNVGKTIFEYRTQNVARLPIIDVGPVDIGNADQEFGLDIGPVCFM

Chromosome 1
Length
Position(start - end)
126829
45376084 - 45502914
Orient to Chromosome minus
Link Location : (1:45376084-45502914)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Col5a2 (ENSMUSG00000026042)
Transcript ID ENSMUST00000086430
Reports
substitution
cSNPs7
Insertion84
Deletion94
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num1
synonymous substitutions 45378415 (p.Thr1333Thr), 45391118 (p.Gly907Gly), 45400863 (p.Gly679Gly), 45413506 (p.Arg354Arg), 45422425 (p.Pro233Pro), 45436406 (p.Thr123Thr),
non-synonymous substitutions 45376108 (p.Asp1490Glu),
B6 transcript
(ENSMUST00000086430)
MMANWVGARPLLILSVLLGYCVSIKAQEQENDEYDEEIACTQHGQMYLNRDIWKPSPCQI
CVCDNGAILCDKIECPEVLNCANPITPTGECCPVCPQTGGGDTSFGRGRKGQKGEPGLVP
VVTGIRGRPGPAGPPGSQGPRGDRGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHP
GPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGVGPAGPPGEP
GEPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNTGEVGFSGSPGARGFPGAPGLPGLKGHR
GHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMP
GKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAV
GTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPK
GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQ
GERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPP
GSIGIRGQPGSMGLPGPKGSSGDLGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA
GERGEQGPPGPTGFQGLPGPPGPPGEGGKAGDQGVPGEPGAVGPLGPRGERGNPGERGEP
GITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGPKGDRGGI
GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPT
GAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLKGGRGTQ
GPPGATGFPGSAGRVGPPGPAGAPGPAGPAGEPGKEGPPGLRGDPGSHGRVGDRGPAGPP
GSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPT
GATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQ
GAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQK
GHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVR
GSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDENMPDPLPEFTEDQAAPDDTN
KTDPGIHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAED
AIKVYCNMETGETCISANPASVPRKTWWASKSPDNKPVWYGLDMNRGSQFTYGDYQSPNT
AITQMTFLRLLSKEASQNLTYICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFR
YTVLQDTCSKRNGNVGKTIFEYRTQNVARLPIIDVGPVDIGNADQEFGLDIGPVCFM*
MSMv4 transcript
MMANWVGARPLLILSVLLGYCVSIKAQEQENDEYDEEIACTQHGQMYLNRDIWKPSPCQI
CVCDNGAILCDKIECPEVLNCANPITPTGECCPVCPQTGGGDTSFGRGRKGQKGEPGLVP
VVTGIRGRPGPAGPPGSQGPRGDRGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHP
GPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGVGPAGPPGEP
GEPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNTGEVGFSGSPGARGFPGAPGLPGLKGHR
GHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMP
GKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAV
GTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPK
GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQ
GERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPP
GSIGIRGQPGSMGLPGPKGSSGDLGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA
GERGEQGPPGPTGFQGLPGPPGPPGEGGKAGDQGVPGEPGAVGPLGPRGERGNPGERGEP
GITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGPKGDRGGI
GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPT
GAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLKGGRGTQ
GPPGATGFPGSAGRVGPPGPAGAPGPAGPAGEPGKEGPPGLRGDPGSHGRVGDRGPAGPP
GSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPT
GATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQ
GAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQK
GHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVR
GSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDENMPDPLPEFTEDQAAPDDTN
KTDPGIHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAED
AIKVYCNMETGETCISANPASVPRKTWWASKSPDNKPVWYGLDMNRGSQFTYGDYQSPNT
AITQMTFLRLLSKEASQNLTYICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFR
YTVLQDTCSKRNGNVGKTIFEYRTQNVARLPIIDVGPVDIGNADQEFGLEIGPVCFM*
homology99.93 (1498 / 1498)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Col5a2 (ENSMUSG00000026042)
Transcript ID ENSMUST00000086430
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTAGTCTGCCATACTCCTTCCTCTATTCAGTGTGTCTCGGAGCACCTGTT
CAGTGCTGAGTAACTATGAACGGTTGAGTCACACATGACATGTTATGTGGGGCTTGATCC
AGATCCCCCAGAATGCACACTATCAAATGAATTAGACTGTCAAAAACACTGAGGGCGTTT
AAATATGTCAAGCTTGAGTAGCACACAAAGTTAATGCCTTGCTCTTTACAGAAATGTGCA
GCTAGGACTACCACATTCCGTGGAAAGCTGGTGTGGGGCTCATAACAGCATCATTCACTT
TTATGTAGCTCTTTGTAATTTAGAATCTAGTTAACAGCATATTGCTCAGTTTAGTGTCAC
CAGATCCTGCACACTGGTCAGGCCAAAGCTCCTTTTCTAACAACAACAACAAAAAAATTT
GGACAGATAAGGACTATGTATAAATTCACAAAATTGGTGAGTTGGCAGATCTGATATTGG
AACCTACCCTTTCTGAGACTTAAACCAGTGTGTTTTCCTCCCTCCACCAGCTTAGTGAAC
TTATTTGTTTTTTAACACAATAGCATGCTCTGTGACGAGGATAACGTATAGATGTGCCTA
CTAAAAAGATGTGGAAATGACTCAATGTAAAGTATCTCAAGTTCATTTTGTATTGGCCAT
ATTCTGCCTCCTTTCTTCCACAATCCTCTCAGAGCATAGGAAAGGGAGGAGGATGAAAAT
TGGGACAAGAATCCTTCCTCTATTGTCAAAAGAAAGGGTTAAAAAAGTGACGTTTTAAAG
GCTTAAATGGCGAAGAGAATTCTGAATTATTTAAGTGCAAAAGAAAAAAAAATCCACTAA
AAGGCTGTAATCCTCCCTAAAGCTTTTTTAGTGTCTCTGGAAAAAGTCAGTGGGTGTGTG
TCTGGGGAAGGGTTGGGGAGGGTGGATTAGACTCCTTCTAATAGGCTTTCTTTAAAAAAA
GAAGAAAAGAAAACACACACACACTCAAACAGAAGGAGAAATAAAAGTTT
1 EXON 1 45502821 45503282 - 1 462
GTCTCTGTTGAGAAGCTTCCTCTGCGCTTAAAATCTACAAGAAGCACTGAAAACTCAAGT
CGCAGAGGCGCGCGCTCTGATTTGGTTGTTTACCATCAATCAGACGGTTGCTTGGCAGAC
ACTGGATGGTTATGAGCCTGAACAAGCTGAAAGGGGCAGGAAAAGAAGTGGAGGCAGCAT
TCTTCCTATTTAAAGCTGCACCGCTTGAAAAAAGTTTTCGCAGACTGTGCCGGACCTGGT
GCTGAAACAGACTGAAGCAGCGCGGGGACTGGTGCTGAAAAAGAGCCCCCAGCGGAATTC
ATGGTGCTACAGTGACCTCAGTATCTACTCTTCGATCCCAGGAGGACCCACATGTCTCAT
ATTTAGACATGATGGCAAACTGGGTGGGAGCAAGACCTCTCCTCATTCTTTCTGTTTTAT
TAGGGTACTGTGTCTCAATAAAAGCCCAGGAACAAGAGAATG
INTRON 1 - 2 45442869 45502820 59952
GTGAGTTTGCCTTTTGCTTTGCTTA..........CAACATCTTTTTGTTTTTATTTCAG
2 EXON 2 45442647 45442868 1 1 222
ATGAATATGATGAAGAAATAGCCTGTACTCAACATGGACAGATGTATTTAAATAGAGACA
TTTGGAAACCTTCTCCATGTCAGATCTGTGTCTGTGACAATGGTGCCATTCTTTGTGACA
AGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCCTATAACACCCACTGGGGAGTGCT
GTCCGGTGTGCCCACAAACTGGAGGTGGAGATACTAGTTTTG
INTRON 2 - 3 45438884 45442646 3763
GTAAGAATTCTCAAAGCTGTTTCAG..........AATGACATTTTCTTTCTTTTTGTAG
3 EXON 3 45438870 45438883 1 0 14
GTAGAGGAAGAAAG
INTRON 3 - 4 45437497 45438869 1373
GTGAGTTTTACTTAGCATGATTCCT..........CTTTTCTTTTAAACAATCTTCCTAG
4 EXON 4 45437464 45437496 0 0 33
GGACAAAAAGGAGAACCAGGATTAGTGCCTGTT
INTRON 4 - 5 45436412 45437463 1052
GTAAGTATTGTATATTTGTATGTTA..........ACAAATGTCCTTCTTCCGTGTTTAG
5 EXON 5 45436379 45436411 0 0 33
GTAACGGGTATACGCGGTCGTCCAGGACCTGCA
INTRON 5 - 6 45434946 45436378 1433
GTAAGTATTTTTCTCCAGTATTTCT..........CCTCATTTATGCTCTTATGCTCTAG
6 EXON 6 45434892 45434945 0 0 54
GGCCCCCCAGGATCACAAGGACCAAGAGGGGACCGAGGCCCTAAAGGAAGACCT
INTRON 6 - 7 45430009 45434891 4883
GTAAGTGTACATGAAATGAGCTGAT..........AATGACAGCTGGTTTTCTTTTCTAG
7 EXON 7 45429898 45430008 0 0 111
GGTCCTCGTGGTCCTCAGGGAATTGATGGAGAGCCAGGTGTGCCTGGTCAGCCAGGTGCT
CCAGGGCCTCCTGGGCACCCCTCTCACCCAGGACCTGATGGCATGAGCAGG
INTRON 7 - 8 45427066 45429897 2832
GTGAGTTGTGTGTTCTGGTTAGTGT..........ACATTGTCAACACTTTATTTTATAG
8 EXON 8 45426988 45427065 0 0 78
CCTTTTTCAGCTCAGATGGCTGGGCTGGATGAAAAATCTGGACTTGGAAGTCAAGTAGGA
CTCATGCCTGGCTCTGTG
INTRON 8 - 9 45423727 45426987 3261
GTAAGCATGAAAGTTATGGATAAAG..........TAACTTTTTCCCACTTGTTTTTAAG
9 EXON 9 45423682 45423726 0 0 45
GGTCCTGTTGGCCCAAGAGGACCTCAGGGTTTACAAGGACAGCAA
INTRON 9 - 10 45422440 45423681 1242
GTAAGTGTTTTTATAATTAATTTAT..........ATTTATCATTTGTTCTCAATTTTAG
10 EXON 10 45422386 45422439 0 0 54
GGTGGTGTGGGACCTGCAGGACCTCCTGGTGAGCCTGGCGAGCCTGGACCAATG
INTRON 10 - 11 45421998 45422385 388
GTAAATATGGAATAAGTATGTCAGC..........TTTTTTTTTTTTTCTAATTTCTTAG
11 EXON 11 45421944 45421997 0 0 54
GGTCCAATTGGTTCTCGTGGACCAGAGGGCCCACCTGGGAAGCCCGGAGAAGAT
INTRON 11 - 12 45421275 45421943 669
GTAAGTTTCTATAGCACATTGCTTT..........CTCTCACCCCCTCTTTCACATTAAG
12 EXON 12 45421221 45421274 0 0 54
GGTGAACCTGGAAGAAATGGGAATACAGGTGAAGTGGGATTCTCAGGATCACCA
INTRON 12 - 13 45418553 45421220 2668
GTAAGTAATGGTTATCAGTATGTTG..........ATGTGCCTATGTACCTTTCTCTCAG
13 EXON 13 45418499 45418552 0 0 54
GGTGCTCGAGGCTTCCCTGGTGCTCCTGGTCTCCCTGGCTTGAAAGGTCACAGA
INTRON 13 - 14 45417642 45418498 857
GTAAGTTGTCTTATTTTCTGTTTTT..........TATGAATTTATATTGTCCTTTTCAG
14 EXON 14 45417588 45417641 0 0 54
GGACACAAAGGTCTTGAAGGCCCCAAAGGTGAAATTGGAGCACCTGGTGCTAAG
INTRON 14 - 15 45416972 45417587 616
GTTTGTCTAACACCAAACTTAACTT..........TGATGTATCCTCACTTCTGCTTTAG
15 EXON 15 45416927 45416971 0 0 45
GGTGAAGCTGGCCCCACTGGTCCAATGGGTGCTATGGGCCCTCTG
INTRON 15 - 16 45414802 45416926 2125
GTAAGCATCACATTATTTGTTTCTT..........TTTTTTCTTCCCATCTTATGTATAG
16 EXON 16 45414748 45414801 0 0 54
GGACCAAGAGGAATGCCAGGAGAGAGGGGAAGACTTGGGCCACAGGGTGCTCCT
INTRON 16 - 17 45413515 45414747 1233
GTAAGTATAGATCATGTATTTATTG..........AATTCTCCCTTTTTCTGTAAATTAG
17 EXON 17 45413470 45413514 0 0 45
GGAAAACGAGGTGCCCACGGTATGCCTGGAAAACCTGGACCAATG
INTRON 17 - 18 45411488 45413469 1982
GTGAGTTCTGTTATTTTTCATAATA..........ACTTTACAATTTTCCCCACACTTAG
18 EXON 18 45411434 45411487 0 0 54
GGTCCTCTTGGGATACCTGGCTCTTCCGGTTTTCCAGGAAATCCTGGAATGAAG
INTRON 18 - 19 45407801 45411433 3633
GTAAGTTTGTGACAGTACTTGATGA..........AACATTTTCTTTTCCATTCCTTTAG
19 EXON 19 45407702 45407800 0 0 99
GGAGAAGCAGGTCCTACTGGAGCCCGAGGCCCTGAAGGTCCTCAGGGGCAGAGAGGTGAA
ACTGGGCCACCTGGTCCAGCTGGCTCTCAGGGTCTTCCT
INTRON 19 - 20 45407278 45407701 424
GTAAGTGCCTGACATATCTAGGAGC..........ATAATATGTTTCATGTATGTTTTAG
20 EXON 20 45407233 45407277 0 0 45
GGTGCAGTGGGGACTGATGGTACACCTGGCGCCAAAGGCCCCACA
INTRON 20 - 21 45407121 45407232 112
GTAAGTACCAGAACTTATGTCAGGT..........ATCTTGTCATCCTTGTCATTGGTAG
21 EXON 21 45407022 45407120 0 0 99
GGCTCTGCAGGAACCTCTGGCCCTCCTGGCTTGGCAGGGCCCCCTGGGTCTCCTGGCCCT
CAAGGCAGTACTGGACCTCAGGGAATCCGAGGACAATCG
INTRON 21 - 22 45406598 45407021 424
GTAATATCTGTTAAATTATGGCTTA..........TTTAACTGATGGTATTTTCTTTTAG
22 EXON 22 45406544 45406597 0 0 54
GGTGATCCAGGAGTTCCAGGTTTCAAAGGAGAAGCTGGTCCAAAGGGAGAACCA
INTRON 22 - 23 45406348 45406543 196
GTAAGCCTTAATTATTTTAATGACA..........GAGACCTGTCCTTCTGTTTTAATAG
23 EXON 23 45406240 45406347 0 0 108
GGGCCACATGGTATTCAGGGTCCCATTGGTCCACCTGGTGAAGAAGGCAAAAGAGGTCCT
CGGGGTGATCCAGGCACAGTTGGTCCTCCAGGACCAATGGGAGAAAGG
INTRON 23 - 24 45405294 45406239 946
GTAAACGTGAACAATACAAATCCTG..........AAAACTGCATTTTGGTCCATTGTAG
24 EXON 24 45405240 45405293 0 0 54
GGCGCTCCTGGCAATCGTGGTTTTCCAGGGTCTGATGGTTTACCTGGACCAAAG
INTRON 24 - 25 45404832 45405239 408
GTAAGATCACACCAAAGCTGACATT..........GCCCTATCTGTCTTTTTTGGAGCAG
25 EXON 25 45404733 45404831 0 0 99
GGTGCTCAGGGAGAGCGTGGTCCTGTAGGTTCTTCGGGGCCTAAAGGAGGCCAGGGAGAT
CCAGGACGTCCAGGAGAACCTGGGCTTCCAGGTGCTCGG
INTRON 25 - 26 45404255 45404732 478
GTAAGAAGCCTATGGTTATATGCTA..........ATTAACAGTTGATTTTCATTGTTAG
26 EXON 26 45404201 45404254 0 0 54
GGTCTGACAGGAAATCCTGGTGTTCAAGGTCCTGAAGGAAAACTTGGGCCTTTG
INTRON 26 - 27 45403520 45404200 681
GTAAGAAATTTAAATAATTTTATCA..........TTCTTGCCTGCTGTCAAACCTGCAG
27 EXON 27 45403421 45403519 0 0 99
GGTGCTCCTGGGGAAGATGGTCGGCCAGGTCCTCCAGGCTCCATTGGGATCAGAGGACAG
CCTGGAAGCATGGGCCTTCCAGGCCCCAAAGGTAGCAGT
INTRON 27 - 28 45403314 45403420 107
GTGAGTACAATGAACAACGTTTAAC..........AGAATACTGTTTATTTATTCTTTAG
28 EXON 28 45403260 45403313 0 0 54
GGTGACCTTGGAAAACCAGGAGAAGCAGGAAATGCTGGTGTGCCTGGGCAAAGG
INTRON 28 - 29 45403170 45403259 90
GTAGGCATTCATTTTCTGGTATTGA..........ACCTAAAATGTCCATGTGATCCTAG
29 EXON 29 45403116 45403169 0 0 54
GGGGCTCCTGGCAAAGATGGAGAAGTTGGTCCTTCAGGCCCTGTGGGACCTCCG
INTRON 29 - 30 45402133 45403115 983
GTATGTGACTTTCTTTGATGATATT..........TCATGCTTTTCTTTCTTTTACTTAG
30 EXON 30 45402079 45402132 0 0 54
GGCCTAGCTGGGGAAAGAGGAGAGCAGGGACCTCCAGGCCCCACTGGCTTTCAG
INTRON 30 - 31 45400875 45402078 1204
GTATGCGCTAATTTAAGTTTTCACT..........GTTTTACTTGTCATTATTGTTTTAG
31 EXON 31 45400821 45400874 0 0 54
GGACTTCCTGGGCCTCCAGGGCCACCTGGAGAAGGTGGAAAGGCTGGTGATCAA
INTRON 31 - 32 45396495 45400820 4326
GTAAGTTTTTAAATAATAATATCAG..........TTCTCTTTTTTTGAAACCTGTTTAG
32 EXON 32 45396450 45396494 0 0 45
GGTGTTCCTGGAGAGCCTGGAGCAGTTGGCCCATTAGGACCTCGG
INTRON 32 - 33 45396160 45396449 290
GTAGGTATTTTCTTTTATGTGATTC..........ATTTCACATCCTGATGACATTGTAG
33 EXON 33 45396061 45396159 0 0 99
GGAGAAAGAGGGAATCCTGGAGAAAGAGGAGAGCCAGGGATAACTGGACTGCCTGGGGAG
AAAGGCATGGCTGGAGGACATGGCCCTGATGGTCCAAAG
INTRON 33 - 34 45394829 45396060 1232
GTGAGTGCAGTCCTGATTTGGGCTT..........AATATTGTCTCATTATTTATTTTAG
34 EXON 34 45394721 45394828 0 0 108
GGCAACCCAGGTCCAACTGGGACCATTGGAGACACAGGGCCACCAGGTCTTCAGGGCATG
CCAGGAGAAAGAGGAATTGCAGGAACACCTGGCCCTAAGGGTGACCGA
INTRON 34 - 35 45394436 45394720 285
GTAAGTCCTGTCTTTTATTAACTAA..........TCTTTGTTATTTTGTATTTTCCCAG
35 EXON 35 45394382 45394435 0 0 54
GGTGGCATAGGAGAGAAAGGTGCTGAAGGAACAGCAGGAAATGACGGGGCAAGG
INTRON 35 - 36 45393107 45394381 1275
GTAAGAGAAAGGGGAAAGGGTATTT..........ATACTTATGTTCTTTTAATTAACAG
36 EXON 36 45393053 45393106 0 0 54
GGTCTTCCAGGTCCCTTGGGACCTCCAGGTCCTGCAGGCCCTACTGGAGAAAAG
INTRON 36 - 37 45392869 45393052 184
GTAAGTTAGAAGGTATCAGTGTGCA..........TAGCTATGTAAAATCTACTTTGTAG
37 EXON 37 45392815 45392868 0 0 54
GGTGAACCTGGTCCTAGAGGCTTAGTTGGCCCTCCTGGCTCCCGTGGCAATCCT
INTRON 37 - 38 45392358 45392814 457
GTAAGTGAAAACCTTTTTTTGTTTT..........TTCAATAGAACTTGTCTCCTTTTAG
38 EXON 38 45392304 45392357 0 0 54
GGTTCTCGTGGTGAAAATGGTCCAACTGGAGCTGTTGGTTTTGCTGGACCCCAG
INTRON 38 - 39 45391932 45392303 372
GTAAAATTTCCAAGTATTTCTAACT..........AATATGTTTTCTCACTTGCTTTTAG
39 EXON 39 45391824 45391931 0 0 108
GGTCCCGATGGACAGCCTGGTGTCAAGGGTGAGCCTGGAGAGCCAGGACAGAAGGGAGAT
GCTGGGTCTCCTGGACCCCAAGGGCTAGCAGGATCACCTGGCCCCCAT
INTRON 39 - 40 45391716 45391823 108
GTGAGTTATCAAAAATTAAAAAAGA..........AGTGGTCTTTTGTTCTTCCATTTAG
40 EXON 40 45391662 45391715 0 0 54
GGTCCACATGGTGTTCCTGGACTGAAAGGCGGTAGAGGAACCCAGGGTCCACCT
INTRON 40 - 41 45391130 45391661 532
GTGAGTCTTTTTTTTTTTTTTTTCT..........TAACCAATGTATCTGTTGTTCCCAG
41 EXON 41 45391076 45391129 0 0 54
GGTGCTACAGGATTTCCTGGTTCTGCTGGCAGAGTTGGGCCTCCAGGCCCTGCT
INTRON 41 - 42 45390194 45391075 882
GTAAGTCTACTTAGATCTACACCAT..........ATTGCTTTTTTCTGTATGATACCAG
42 EXON 42 45390032 45390193 0 0 162
GGAGCTCCAGGACCTGCAGGGCCCGCAGGAGAACCTGGGAAGGAAGGACCTCCTGGTCTT
CGTGGTGACCCTGGCTCTCATGGGCGAGTGGGAGATAGAGGACCAGCTGGCCCACCTGGT
AGCCCAGGAGATAAAGGGGACCCAGGAGAAGATGGACAACCT
INTRON 42 - 43 45389480 45390031 552
GTAAGTGGGCATCTGTTTCACTCCA..........AGTAACTATCATCTCTTACCACTAG
43 EXON 43 45389372 45389479 0 0 108
GGTCCAGATGGTCCTCCTGGTCCCGCTGGTACCACTGGGCAAAGAGGAATTGTTGGAATG
CCCGGACAACGTGGGGAACGAGGAATGCCTGGCCTTCCTGGCCCAGCG
INTRON 43 - 44 45388321 45389371 1051
GTAAGTAGTTGTTTTGGTCAATGTT..........TTACCTACTTGTGTTTTAATTTCAG
44 EXON 44 45388213 45388320 0 0 108
GGTACACCAGGAAAAGTAGGACCAACTGGTGCGACAGGAGATAAAGGTCCCCCTGGACCT
GTAGGACCTCCAGGTTCCAATGGTCCTGTAGGAGAACCTGGGCCAGAA
INTRON 44 - 45 45386887 45388212 1326
GTGAGTGCTACAGTCCTTAACAAAA..........CTGTGTCTAACACTATTCTTTTTAG
45 EXON 45 45386833 45386886 0 0 54
GGTCCGGCTGGTAATGATGGTACCCCAGGACGGGATGGTGCTGTTGGAGAACGG
INTRON 45 - 46 45385070 45386832 1763
GTAAGTTGATTAAAACATTAGAACC..........AGAATAATATTATATTTTTTGTCAG
46 EXON 46 45384962 45385069 0 0 108
GGTGACCGTGGAGACCCCGGGCCTGCTGGTCTACCAGGCTCTCAGGGTGCCCCTGGAACT
CCTGGCCCTGTTGGTGCCCCTGGAGATGCAGGACAAAGAGGAGAGCCA
INTRON 46 - 47 45384454 45384961 508
GTAAGAATGTCAACTTCACATTGAC..........CCAAGTTTTATGAAAAATTTTCTAG
47 EXON 47 45384400 45384453 0 0 54
GGTTCTCGAGGCCCTGTAGGACCACCTGGTCGAGCTGGAAAGCGTGGTTTACCT
INTRON 47 - 48 45383699 45384399 701
GTAAGTTCTATGTTTTCTGAACAAA..........AATGTTCATGATTGTCTATTCCCAG
48 EXON 48 45383591 45383698 0 0 108
GGACCACAAGGACCTCGAGGTGACAAGGGTGACAATGGAGACAGAGGTGACCGAGGTCAG
AAAGGCCACAGAGGGTTCACTGGCCTGCAGGGTCTTCCTGGACCTCCT
INTRON 48 - 49 45383221 45383590 370
GTAAGTTATTTCTTAAATACTGTAC..........CACTTTCATTAATCTTCCTCTGTAG
49 EXON 49 45383167 45383220 0 0 54
GGTCCAAATGGTGAACAAGGAAGTGCTGGCATTCCTGGTCCTTTCGGTCCAAGA
INTRON 49 - 50 45382224 45383166 943
GTAAGTAACAGAAACTATTAAGTTT..........AAAATACATTTTTGTGTTCTGACAG
50 EXON 50 45382116 45382223 0 0 108
GGTCCTCCAGGACCAGTAGGTCCTTCAGGAAAGGAAGGAAACCCTGGGCCACTTGGACCA
ATTGGACCTCCTGGTGTGCGGGGCAGTGTAGGAGAAGCAGGACCAGAG
INTRON 50 - 51 45380292 45382115 1824
GTAAGGTCAAAAGAGTTTGCATGGA..........GTCTTTCCAATTTCTCCTTAATTAG
51 EXON 51 45380000 45380291 0 1 292
GGTCCTCCTGGTGAACCTGGGCCTCCTGGCCCTCCAGGTCCCCCTGGCCATCTTACTGCT
GCTCTTGGTGATATCATGGGACACTATGATGAGAACATGCCAGATCCACTTCCAGAGTTT
ACGGAAGACCAGGCAGCTCCAGATGACACAAACAAAACAGACCCTGGGATCCATGTTACC
CTGAAGTCTCTCAGTAGTCAGATTGAAACCATGCGTAGCCCTGATGGTTCCAAGAAACAC
CCAGCCCGCACTTGTGATGATTTAAAGCTTTGCCATCCCACAAAGCAGAGCG
INTRON 51 - 52 45378495 45379999 1505
GTGAGTAGACAGGGGCCTGTTTGAG..........CACATATTTCTATCTTGGAAAATAG
52 EXON 52 45378307 45378494 1 0 188
GTGAATATTGGATTGATCCTAACCAGGGATCAGCTGAAGATGCAATCAAAGTTTACTGCA
ATATGGAAACAGGAGAGACGTGTATTTCAGCAAACCCAGCCAGTGTTCCACGTAAAACCT
GGTGGGCCAGCAAATCCCCTGACAATAAGCCTGTGTGGTACGGTCTTGACATGAATAGAG
GATCTCAG
INTRON 52 - 53 45376879 45378306 1428
GTGAATTAACATATTTACCTAGAAT..........ACATAAATTTCTTTTATTTCTCTAG
53 EXON 53 45376639 45376878 0 0 240
TTCACATATGGAGATTACCAGTCTCCTAACACAGCTATCACTCAGATGACCTTTTTGCGT
CTTTTATCAAAAGAAGCCTCGCAGAACCTTACTTACATCTGTAGGAACACTGTTGGATAT
ATGGATGATCAAGCTAAAAACCTCAAGAAAGCTGTGGTCCTTAAAGGGTCAAACGACTTA
GAAATAAAAGGAGAAGGAAACATCAGATTCAGATACACAGTTCTTCAAGACACCTGCTCT
INTRON 53 - 54 45376231 45376638 408
GTAAGTGCCTTTTGGACTATGCTTT..........TATCCATTGTCCTCTTGAATTCCAG
54 EXON 54 45374321 45376230 0 - 1910
AAGCGAAATGGAAATGTAGGCAAAACTATCTTTGAATACAGAACACAGAATGTGGCCCGC
TTGCCCATCATAGATGTTGGTCCTGTGGATATTGGCAATGCAGACCAGGAATTTGGCCTT
GAAATTGGGCCAGTTTGTTTCATGTAACAGAAGCCCAGACGTATCGACAATGAGCACTAC
CATCAATGACCACCACAAGAACTGTGACTGTTTAAAGTTCATCCTGAGACTCTTGAAGTA
ATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACCTTATCCTT
CAGAATATTTATTTTACTTACAATCCTCAAGTTTAATTGACTTAATTTTTTCAATATGGC
CGTTTAGATTAAAGCAACCAACGACAATGACCATCTTTACAAAAAGTAAACTGATCAAAA
AATAAATATGTTTTCATCAATTCATTTCACTGTAATGAATACGTTGCTTAGTATTTATGA
GAAAATTCTTCTTCCTAGCAGGTAGCTTACGTGATGGGGTATGTAAAGCCTCAGCACGTG
TTGATTTTGCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATT
GTCAGAACATCAGTGACAAATGAAGACCCCCATGCATGTCTTAATATTATACTAACATTA
TAGAAAAAATTAAGGTGAATATAACACGTTTCCACTGTCTTAAATGATATCTTTAAATAA
CATGTAGCCATTGACTTTTAGGAGGAAAAAAATCCATAAAATTGCTTCAACTTTACAATT
TATTTTGCAAAGACTGATACAGTTAGAGTTTTTTCCTCATTCAAATTTAAGGGTAACATT
TTCTTTGTGTTGTAATCTTTCAATACAGATAGAAGTTATATTTGTGGTTTCTTATGTAAG
AAGATATTGGATGAAATTAAAAAAAATTACCCACACAATTTTCTAACACACATGCCCAGT
AATGAATGTTAAGACTCTCCCACAGTCACAGTCTCATTTTCCTGAAGCATATCATAAGAA
ATGAACAAGAAGTCCAGCATTATAATGATCACTCAAATAAAATGTGAGGATTGGAATTAG
AACATTCATAAGAAAATATGACCCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAG
CTGGGATAGATTTCCTGTTCTTGTTTATTTTTAGGTGTTGAAAGGTGCTATGCTTCTGTT
GTTATTCCAAGACTGGAGATAGGCAGGGTTAAAAAAATTATAACTTTTCTTTTAATGATG
GTGCTAAAATTATTTCTATAAAATTCTTTAAAGATAAAGATTGTTTCATCAATGCTATTT
GTGAACACAGAACTGTTAAACATCCCATTTGAGAGATAGATCATTATTCCTGGGTCTTTT
AACTGTTCCTTTCATGATGTATTTAGAACATTGTGTAATACTTGCAAGTGTCTTAACATT
GGACACATAGGTCCCCTTGTGTCTCAAGATTTTTTCCTTAATTGCAGTTGTTTGCTCCAT
TGTAGTTTCTTACTTAAATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTT
GATCATGTATCTCTGCAAAGCATCGAATTAAATGCATGCTTCTGTCATGTCAGTCATCTT
CAGTTTGTTGAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAG
ATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACGATGCAACAAGTACCTACCATTTTG
TCTGCACTGGCTTAAAAATAAACCTATCTGTAACATTGCCTGCAAAGGCATGTTGACATC
AATGAAGACAGTCTATGCGTTAGAAAACTCAGGCTAGTGATTGGTAAAGAGTAAAGGAAA
TGAAAAATCCATTATTGAATAAACTAATAATAAAACATGCCTCAATGTGT
3' upstream sequence
ATCAAGTATGAAATTAGCTTGAACAGTACCAGAGTTTCATTTTCAATGTCTATTTCGTAG
CTTCATTTTTTTGAGCCCCATATCTTTTTTTTTTGGTTTTGTTAATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATGTTATGTATTTTCCTCAATT
ACATTTCCAATGCTATCCCAAAAGTCCCCCACACCCTCCCCCCCCCCAACTCCCCTACCC
ACCCATTCCCATTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCCT
ATCCAATGGGTCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAG
CTAGAGTCAGGTAGCCCCATATGTTGAATTTGACTCTATAACTAAGGATACTTGTACATT
TTTCTTGTATTTTCTTTATGTCCAACTTGTATAGGTTGTACAGGTTCATATAGGTAGTCC
AGAAACATATCTTTATTTCCGTCAAATGAAAATACTAATAGTTTCTAGTCATAGAAATAC
CAGCTCTGAAGCATCAGGGATGCTTCTAGGATTCCTGACATTAGACCAAAGCCTCAAATC
TTACCCTGTGTTACAGGTACACAGCTTTCTCCATAGCGGTGGGTTTCTTTACCTGTATGA
CCTAGAGGTAGCTCAGATGCTAGATAATCAAAGGCAAATCAATATACATCTGGGAGGACA
GTGGTATCACTTTATTAAAAATAGAAATAAATATTCTTGCAAATTACTTTAAATGCAGTT
TTAAAAAAAAGCAAAGATGTCAAAGAAAGCAAGAGCGATGCTGAAACATCATTATGTAAT
TTGATAAATGCTGGCTGTGTTTATTGCTATTTGTTCTAATTTTAAAAAGATTTAATTTTA
TAAATTACAAACATCATCCTGTCTCCCAAAATGATATTATAGGCCTGTTTCAGTTGGGGT
TTTGATTAGTGTGATACAACACTATGACCAAAATCAGCTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Col5a2 (ENSMUSG00000026042)
Transcript ID ENSMUST00000086430
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1498 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information