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Target CDS Information

Gene Symbol (Gene ID) Gm20449 (ENSMUSG00000092592)
Cross Reference
Clone_based_vega_transcript RP23-396C19.4-001
EMBL AC109227, AC162792
MGI_trans_name Gm20449-001
OTTP OTTMUSP00000050775
OTTT OTTMUST00000092039
UniParc UPI0001F78BDF
Uniprot/SPTREMBL E9Q3U2
Vega_transcript OTTMUST00000092039, RP23-396C19.4-001
Vega_translation 200962, OTTMUSP00000050775
Definition protein_id:ENSMUSP00000092110
translation:
MFLAYGIRWNTAGATFKSILSLRKRNFTIQFAEWIYKEE

Chromosome 7
Length
Position(start - end)
40470
41458825 - 41499296
Orient to Chromosome minus
Link Location : (7:41458825-41499296)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gm20449 (ENSMUSG00000092592)
Transcript ID ENSMUST00000094532
Reports
substitution
cSNPs3
Insertion60
Deletion78
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num3
synonymous substitutions
non-synonymous substitutions 41458901 (p.Thr15Ile), 41458908 (p.Gly13Ser), 41458910 (p.Ala12Val),
B6 transcript
(ENSMUST00000094532)
MFLAYGIRWNTAGATFKSILSLRKRNFTIQFAEWIYKEE*
MSMv4 transcript
MFLAYGIRWNTVSAIFKSILSLRKRNFTIQFAEWIYKEE*
homology92.50 (40 / 40)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gm20449 (ENSMUSG00000092592)
Transcript ID ENSMUST00000094532
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ATGAACTCCCAATTACGTAGAAATTACTAAAACAAACAAGCAAACAAACA
AACGATAGGTATCTCCCAATTGCCCGAACGGGTGTACAAACTCCATCCCCTTAACCAGAA
TCCAGGAACCAACAGGAAGCTTACTGTTTTTCTCCGAGTCTGCCATTCACCCGGGGAGTC
TGCAGAGGGAACGCATTTCCCGGAGACCTTGGCTGGGTCAGCCCACCCCTCGATTATCCG
GAATGAAGAGCGAATTTGGGGCCATTATTTCCTTATGCGCTTCCATACCTTAAACCTGAG
TTTTATTGGAAAACCAAATCAACCATTTCCGTCCAAATTTGAAGCAACCGTTTATTAAAT
ATTAAGTACTGACCAAGCGGTGGATCTGGATCAGAAATATCCACAGAATTTCCCAGCTGG
GATAGCCCCCGGTCACATGTTGTAGGGGTTTATACAGATAATCAATTTGGCCACCGTACT
TTCCCACGAGGACTTGTTACTTACAAAGAACTACAATTCCCAGCATTCCTAGAAGTAGCC
TGGTTCCTGGGCAGGTGAGGCTTACAGGTCAAATTTGGGAATTACAATTTTCAAGCTTGA
TTTCCATTACATATCCACCTTCATTTCCGGAGGAAGAAGGGGAAGTGCCTAATGAATAAA
GGTAGTTCAAGCAAGCTCCAGATTCCACCACGACTTAGAAAGCGCAGGGTCGTTGTTTAC
AAAGGGGAGGAGCAGGCAGCTGGGCGGCAGGAGCTGAGGTGATGGGTCCTTCCCGGTGCG
GGATGGAAAGACAGACGGGTAGAATACAGACACAAGTGCTACTGAAATGCAAATCTCTAT
GTATCTGGAAAAGGTCTGGTACTGTACTGGAAGACCCGGCCAGCAACCATTATGCGGAGT
CTCATCTGCACACCCTAACCCTCAGGGAGGTACTCGCGTTACTCAAGACTTAATGGCCAA
TCAGAGCCTTGAGGTGGACCTGCCAGTCAGAAAAGGAGGCGGGATCTTCC
1 EXON 1 41499294 41499417 - 0 124
GGGTGCCTTGCGGCAGCTTCAGCTCTGTAGCGGAGCGGGCTGGAAAAGTTCTGATTGTTT
TTCTCTAAGCGCTGCTGCTGGGTGCTGTGAGGGAAGCTCTAGCAAATTGCTAATTCGCGA
CATG
INTRON 1 - 2 41458942 41499293 40352
GTGAGTGCAGAGCCACTGCCCAAAG..........GACCATTCTTCTTTTGTACTTTCAG
2 EXON 2 41458809 41458941 0 - 133
TTCCTTGCTTATGGAATCAGATGGAACACAGTTAGTGCTATTTTCAAATCCATATTATCA
TTGAGAAAGAGAAATTTTACAATACAGTTTGCTGAATGGATATACAAAGAAGAGTAAAGG
TGATTGTTCAGTG
INTRON 2 - 3 41448493 41458808 10316
GTAAATACGTGCACGAGATGGATGG..........CGTTTTTTCCTCTTCATATTTACAG
3 EXON 3 41448433 41448492 - - 60
CACACGTAACCATGTTCCACATGAATTGGACCCATACTACTTCCAGGATATGTACCTAGA
INTRON 3 - 4 41428772 41448432 19661
GTAAGTACAATTATTCCTTGTAAAA..........TCTGGCCCTGATGTTTACCATTCAG
4 EXON 4 41428532 41428771 - - 240
GAGATCAACAGAAATCCTCATCTTCTACCCAACACAACTCTTGGATTTGAGCATCATAAC
ATTAAATTTTCTGAAAAGAATATTCTTCTTGGTCCCTTTCTTTGGCTCTCAGGGTTGAGC
AATCAACTAGTTAATTATAACTGTGGCCAGAAGAGAAATTTACCTGCAGCACTCACTGGA
ACGTCATGGGCAATATCTGCCCATATTGGGACACTGCTGCAACTCTACAAAATACCACAG
INTRON 4 - 5 41427512 41428531 1020
GTGAGCAGTAGGATATGGGAACTGG..........ATGCTGTATATGCTCTTGCTCACAG
5 EXON 5 41427433 41427511 - - 79
CCTCCATGAGATGACTGTTCAACAAATACAGACACAACCATATGCCAATGGAGAAGGAAT
GGCATTCTCCCCCTGGCAG
INTRON 5 - 6 41426779 41427432 654
GTAACATCCCTTCCTGTGTATTATC..........ATATACATACCTGCATCTCTTCTAG
6 EXON 6 41424978 41426778 - - 1801
ATCCTCCCCTTTCTAAAGATCACCCTACTTAAAAACCATCCAAGTGGTCAAACTGTAATA
GATGAGAGGAAAAACTTATATTCAGAATATGACATTTTCAATTTTTGGAATTTCCCAGCG
GGTCTTGGATTAAAGATGAAAGTAGGAACCTTTTCTCCAAATTCTCCCCAGGGTCACCGG
TTGTCTTTATCTGAGGAAATGATACAATGGCCGCCACAGTTTACAAAAGTAAGTTGTGAT
TTACCTCACTGCTTTGACTTTTTATAAAAACAAATGTAATTTTCAGGATATAGTGTTAAT
TGGACACTCATTCAGTATCAGTCAGTCTTTAACTCCTAATAAGTAACAGCCAACATTTGA
CTATTTTGTCATTTCCCTGACTTTGATTAATGGAAAAGTTGTTATTAATGTCCACACATT
TCTTATAAATAGTGTCTGTTAGATTTCTGTCACTGCTTCAAGACACTGATAGGAGTTTAT
TTATCAAGAAGTTGAAGAAATTTCAGTGAGAGAGCTAAGATGAAATTTTATTTTTCAGCC
TCTGAAAAGATAAAATATCATGACAGGCCAGTATGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTACATGTGTGTATGTTATTTTTGATTGTTTCTTCACATAAATACTCAAGAAAAGC
TGACTGGAGGAGAGTACAGGTTTCTTTAACTGACACTGTGAGCAGGCATTATATCATGGT
GGAAAAAGAGTGTTTTATGTACCAGAGGATGTGATGACATCATATTCACAGAGCAGAATC
AGAAATCAAAGAATGTGGTTGCTTACCTTCTATCTAAATTTCATTTTCATATGAGACAAT
GGACAATGAATGCTGACACCTATTATGTGGTGGCTCTTCGTACCTCAGGTAAATATCTCT
ATAAAATTCCTCTCAGAACTGCATAAGATTTGTTTCCATGATGAAACCAAGTCCTGTAAA
GTTATCAATCAAGAACTATACTCATGCCTAGTAGCCAGTAAGCTTGAGACACATTAACTC
TGAAGTCGTACCATGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAA
GAAGCAAGGTGGGGAGGAAAGGATTTATTCAGCTTACAATTCCATACTGCTGTTTATCAC
CAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCAT
GGAGGGATGTTCTTTACTGGCTTGTTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAA
CCAAGACTTCCAGCCCAGGGATGGCGCCACCCACAGGGGCCTTTTCCCCTTGATCACTAA
TTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGGTCCTTTC
TCTGTAATAACTCCAGTTGTGTCAAGTTGACACAAAACTAGCCAGTACACATGGCATTCT
CCAATACTACTTTAATGAGGCATTCTTTACAACAGTTGCATGGTATTGGGCCAAAATGTA
AACATGTGGATGATTTCATGCAAAAGGAACCAAAATTAGTAATACCAAACTCGTTTTCTT
CAATTTTTAGTGTAAGCATTTACAAAGTAACTGTTCAATGATACTCAGAAATAGTCCAAA
AATTTGGATTTTTTTCAAAAAGTCCAAGCATTTACTAATAGATTTCATTCCTCCTAGATT
CCTCAGTCTGTGTGCAGTGAGAGCTGTAGGCCTGGATTCAGGAAAGCTGCCCAGGAGGGG
AAGGCTGTCTGCTGCTTTGATTGTATTCCTTGTGCAGACAATGAGATTTCCAATGAGACA
G
INTRON 6 - 7 41410979 41424977 13999
GTAAATAAAGGCTTACAGAGATGTG..........TAATCATGTTATTTTTTTCTTTCAG
7 EXON 7 41410855 41410978 - - 124
TTTGTTTATATGGTGGATTATGTTGATGTATTTTCATATATTGAACATTACAGCATCCTT
GGAATGAAGCCTACTTGATCATGATGGATTATGTCTTCGATGTTTTCCTGGATTCAGTTT
GCAA
INTRON 7 - 8 41400664 41410854 10191
GTATTTTATTGAATATTTTTCTATC..........TACAGTCACTTTCCTTTCTAAACAG
8 EXON 8 41399378 41400663 - - 1286
ATATGGATCAGTGTGTGCAGTGTCCAGAAAGTCACTATGCAAACTCAGAGAAGAATCACT
GCCTTCAGAAATCTGTGAGCTTTTTGGCCTATGAAGAGCCCTTGGGGATAGCACTCACCA
TCACAGCACTGGACTTCTCTGTACTCACAGCTTTGGTTCTTGTGGTCTTTGTGAAGCACA
GAGACACACCCATTGTCAAGGCCAATAATCGGGTTCTCAGCTACACCCTGCTATTGACAC
TCATAATCTGTTTTCTCAGTTGCTTGCTCTACATTGGACAGCCCAACACAGCCACCTGCA
TCTTGCAGCAAACAGCATTTGGAACTTTGTTCACTGTGGCTCTCTCCACAGTGTTAGCCA
AAGCTATTGTAGTGGTTACTGCATTCAAGGTCACCTCTCCATCTAGAATGGTGAGGTGGT
TAATAGTATCAAGGGCCCCAAATCTCATTATTCCCATCTGCACACTGATCCAACTTATTA
TCTGTGGAATATGGCTGGCTACCTCTCCACCTTTTATTGATCAAAATGCTCATGTTGAAC
ATGGTCACATCATCATTATGTGCAACAAGGGTTCTGCAGTTGCTTTCCACTGTGTACTGG
GATACCTTTGCTCCTTAGCACTTGGGAGCTATACCATGGCCTTCTTATCCAGGAATCTGC
CTGACACATTCAATGAAGCCAAGTGCCTGTCATTCAGCATGCAGGTATTCTTCTGTGTTT
GGATCACTTTCCTCCCTGTCTACCATAGCACAAAGGGGAAGGTCATGGTGGCTATGGAAG
TCTTCTCTATCTTGGCTTCCAGTACATCATTTCTTGCCTTGATATTTGTCCCTAAGTGCT
ACATAATTTTGTTAAGGCCAGATAAGAACTCATGTCTTGATATCAGGAACAAAATACATT
CAAGAAGAAGTAGTCATTTAAAATTTATTTAAGAGTTAAAATTAATCCATGTTAATTAAA
CATAATGGTTTAAAAGTATGACATCATTCTAAATCTTTTATTCAGATATATTATTACGTG
GGTTCATAATTCTTAATTTCATTGCTTTAGTGTTTCTTTGTAGTGTAACAATTTTTATTT
AAGACTGATCTTTATGTTATACATTTTTTTTTCTGTAACAGTATCTCACTTTGTGTCTTT
TATTGGTTTACTTCCCCATAAGTTGACTATTGTGGTATAACTTATTCTGTCTTCTTCTGT
CTGCAAAGTGCTAATGTTGAAGTTATGTAACCATCCCTAGCCATTTTATATTCATTTGGT
TCTTCTTTGATTAAATATTCTTTAAC
3' upstream sequence
TTATTTTATTTACTTAAATTCCAAATATTACCCCCTTGCCAGTACCCCCCCCAAGTTTAT
TTACCCCACCCTCCCTCCTCTTGGCCTCTGAGAGGGTGTTCCCTCACCCATGAACCCACC
CTGCCCCCTCACATCCCTCCACTTCCCCAAGCATCCCCTTTATGTAACAGATTTCATTTG
TTTTTGAACTGTAAATTATTTTATTATACTCTACTGTGTAAATTCAACATCGTAAGAGAA
GTTTGTCTCTCAAGCATCAATTTCAAATGTTCTTATTTTCAGAAGAAATTCCATGGCACA
GAATGACAGTAGAAGCTCTTTCTATTTTGATTTCACATTATTTTGTAAAATGAGGGAAAA
CATGGGTAACTAAAAATGATGCCTCATTGGAAGCTAGCAGTCATTTAGAAATCCAGAGCT
CAGTAACAGAATGCTAGTGACTGATCTGGCAGTTCACAAATTTTTATGGGCACAATGTAC
TGGGGCAGAGGTAAATCAGGAGAGCTCACTTCAGAAACAAGCATTATGGAGGATGAATTA
CCTTAAACTGTACAACAGATGTAATATGGAGTTAAATACTTCATTGAAAAAATTAAACAG
TTTTGTTAAAGCAGTGGAAATCATTTATAATTGACAATGAAATTGGAAATATCATTTTAA
ATGGCCTCAGGGAAAAACTTTGAATTTGATTATATATGCCATATGTGGATATTCAAAGTT
CCTGAGCAAAATTCATGGCTCTGTGAAAGCAGGGGATTATTAATGTCTCTTATTGTAGAA
AAATCACAAATGCCACTAATATGAGTCAATATTAGTTCATGTTCAGTCCCTTATTGTTTT
TCTGTTTGAAGATTTGTTATCATTGTGATATGGTTAAAGAGGTGTGCTTTTTAGTGGTGG
GTAGAGGTTTTTTTTTTTTTTTCTCCATTTACCCTGTTATGTTTCTCAGGCAATGTAGAA
AGAAAGAAGGCAGAAAAGGAGTAGAGTAGTGTACTCCAGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Gm20449 (ENSMUSG00000092592)
Transcript ID ENSMUST00000094532
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 40 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information