MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Nkx6-2 (ENSMUSG00000041309)

Cross Reference

CCDS	CCDS40170.1
EMBL	AC112670, CH466531
GO	GO:0000122, GO:0000978, GO:0001078, ...show all
goslim_goa	GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name	Nkx6-2-002
OTTP	OTTMUSP00000029318
OTTT	OTTMUST00000060125
protein_id	EDL17860.1
UniParc	UPI0000024B42
Uniprot/SPTREMBL	D3Z4R4

Vega_transcript	Nkx6-2-002, OTTMUST00000060125
Vega_translation	202866, OTTMUSP00000029318

Definition

protein_id:ENSMUSP00000095588
translation:

MDANRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKTPALGSLGAQLPLGTPHGI
SDILGRPVGAAGGGLLGSLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG
VVQGSPWRDPRLAGSAQAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR
LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR
PLDPNSDDEKITRLLKKHKPSNLALVSPCGGSAGDAL

Chromosome

Length
Position(start - end)

1104
139581434 - 139582539

Orient to Chromosome

minus

Link

Location : (7:139581434-139582539)
/

Detail Map

name	Inpp5a (ENSMUSG00000025477)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Inpp5a note : inositol polyphosphate-5-phosphatase A [Source:MGI Symbol;Acc:MGI:2686961]

name	Nkx6-2 (ENSMUSG00000041309)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Nkx6-2 note : NK6 homeobox 2 [Source:MGI Symbol;Acc:MGI:1352738]

name	Inpp5a (ENSMUSG00000025477)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000106098

name	Inpp5a (ENSMUSG00000025477)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000026550

name	Inpp5a (ENSMUSG00000025477)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000097975

name	Nkx6-2 (ENSMUSG00000041309)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000097974

name	Nkx6-2 (ENSMUSG00000041309)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000106095

name	Inpp5a (ENSMUSG00000025477) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS52428.1 RefSeq_peptide:NP_001120835 RefSeq_mRNA:NM_001127363.1 Vega_transcript:Inpp5a-001 Vega_transcript:OTTMUST00000060126 Uniprot/SPTREMBL:Q7TNC9 UCSC:uc009kfr.2 Fantom:F730042A11 Fantom:F830016L10 EMBL:AC112670 EMBL:AC118735 EMBL:AK171360 EMBL:AK171880 EMBL:BC056341 GO:GO:0004445 GO:GO:0006470 GO:GO:0016020 GO:GO:0042731 GO:GO:0046855 GO:GO:0046856 GO:GO:0070062 MGI_trans_name:Inpp5a-001 Vega_translation:202863 Vega_translation:OTTMUSP00000029319 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005975 goslim_goa:GO:0006464 goslim_goa:GO:0006629 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0016791 goslim_goa:GO:0043226 goslim_goa:GO:0044281 protein_id:AAH56341.1 protein_id:BAE42408.1 protein_id:BAE42716.1 OTTP:OTTMUSP00000029319 OTTT:OTTMUST00000060126 Reactome:R-MMU-1430728 Reactome:R-MMU-1483249 Reactome:R-MMU-1855183 UniParc:UPI0000022631
definition	note : transcript_id=ENSMUST00000106098 protein_id : ENSMUSP00000101704 translation : MAGKAAAPGTAVLLVTANVGSLFDDPENLQKNWLREFYQVLHTHKPHFMALHCQEFGGKNYEASMSHVDKFVKELLSSDAMKEYNRARVYLDENYKSQEHFTALGSFYFLHESLKNIYQFDFKAKKYKKVTGKEIYSDTLESTPMLEKEKFPQDYFPECKWSRKGFIRTRWCIADCAFDLVNIHLFHDASNLVAWETSPSVYSGVRHKALGYVLDRIIDQRFEKVSYFVFGDFNFRLDSKSVVETLCTKATMQTVRAADTNEVVKLIFRESDNDRKVVLQLEKKLFDYFNQDVFRDNNGTALLEFDKELSVFKDRLYELDISFPPSYPYSEDSSQGEQYMNTRCPAWCDRILMSLSAKELVLKSESEEKVATYDHIGPNVCMGDHKPVFLAFRIAPGAGKPHAHVHKCCVVQ

name	Inpp5a (ENSMUSG00000025477) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS21954.1 RefSeq_peptide:NP_898967 RefSeq_mRNA:NM_183144.3 Vega_transcript:Inpp5a-002 Vega_transcript:OTTMUST00000060127 Uniprot/SPTREMBL:E9QAS7 UCSC:uc009kfq.2 EMBL:AC112670 EMBL:AC118735 GO:GO:0004445 GO:GO:0005515 GO:GO:0006470 GO:GO:0016020 GO:GO:0042731 GO:GO:0042731 GO:GO:0046855 GO:GO:0046856 GO:GO:0070062 GO:GO:0070062 MGI_trans_name:Inpp5a-002 Vega_translation:202864 Vega_translation:OTTMUSP00000029320 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005975 goslim_goa:GO:0006464 goslim_goa:GO:0006629 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0016791 goslim_goa:GO:0043226 goslim_goa:GO:0044281 OTTP:OTTMUSP00000029320 OTTT:OTTMUST00000060127 Reactome:R-MMU-1430728 Reactome:R-MMU-1483249 Reactome:R-MMU-1855183 UniParc:UPI0000192E5E
definition	note : transcript_id=ENSMUST00000026550 protein_id : ENSMUSP00000026550 translation : MAGKAAAPGTAVLLVTANVGSLFDDPENLQKNWLREFYQVLHTHKPHFMALHCQEFGGKNYEASMSHVDKFVKELLSSDAMKEYNRARVYLDENYKSQEHFTALGSFYFLHESLKNIYQFDFKAKKYKKVTGKEIYSDTLESTPMLEKEKFPQDYFPECKWSRKGFIRTRWCIADCAFDLVNIHLFHDASNLVAWETSPSVYSGVRHKALGYVLDRIIDQRFEKVSYFVFGDFNFRLDSKSVVETLCTKATMQTVRAADTNEVVKLIFRESDNDRKVVLQLEKKLFDYFNQDVFRDNNGTALLEFDKELSVFKDRLYELDISFPPSYPYSEDSSQGEQYMNTRCPAWCDRILMSLSAKELVLKSESEEKVATYDHIGPNVCMGDHKPVFLAFRIAPGAGKRCQRRERILERPPCSSVSNSSS

name	Inpp5a (ENSMUSG00000025477) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_006536225.1 Vega_transcript:Inpp5a-003 Vega_transcript:OTTMUST00000060128 Uniprot/SPTREMBL:Q3TZT4 UCSC:uc009kfs.2 Fantom:F830223F09 EMBL:AC112670 EMBL:AC118735 EMBL:AK157558 GO:GO:0004445 GO:GO:0006470 GO:GO:0016020 GO:GO:0042731 GO:GO:0046855 GO:GO:0046856 GO:GO:0070062 MGI_trans_name:Inpp5a-003 Vega_translation:202865 Vega_translation:OTTMUSP00000029321 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005975 goslim_goa:GO:0006464 goslim_goa:GO:0006629 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0016791 goslim_goa:GO:0043226 goslim_goa:GO:0044281 protein_id:BAE34123.1 OTTP:OTTMUSP00000029321 OTTT:OTTMUST00000060128 Reactome:R-MMU-1430728 Reactome:R-MMU-1483249 Reactome:R-MMU-1855183 UniParc:UPI00005AD0E6
definition	note : transcript_id=ENSMUST00000097975 protein_id : ENSMUSP00000095589 translation : MQGLWGLPDQLGVTFHVLLLCLSRKTWPGESMLPENLQKNWLREFYQVLHTHKPHFMALHCQEFGGKNYEASMSHVDKFVKELLSSDAMKEYNRARVYLDENYKSQEHFTALGSFYFLHESLKNIYQFDFKAKKYKKVTGKEIYSDTLESTPMLEKEKFPQDYFPECKWSRKGFIRTRWCIADCAFDLVNIHLFHDASNLVAWETSPSVYSGVRHKALGYVLDRIIDQRFEKVSYFVFGDFNFRLDSKSVVETLCTKATMQTVRAADTNEVVKLIFRESDNDRKVVLQLEKKLFDYFNQDVFRDNNGTALLEFDKELSVFKDRLYELDISFPPSYPYSEDSSQGEQYMNTRCPAWCDRILMSLSAKELVLKSESEEKVATYDHIGPNVCMGDHKPVFLAFRIAPGAGKPHAHVHKCCVVQ

name	Nkx6-2 (ENSMUSG00000041309) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS40170.1 Vega_transcript:Nkx6-2-002 Vega_transcript:OTTMUST00000060125 Uniprot/SPTREMBL:D3Z4R4 EMBL:AC112670 EMBL:CH466531 GO:GO:0000122 GO:GO:0000978 GO:GO:0001078 GO:GO:0003700 GO:GO:0005634 GO:GO:0010454 GO:GO:0010455 GO:GO:0021912 GO:GO:0021913 GO:GO:0022010 GO:GO:0030154 GO:GO:0031018 GO:GO:0043565 GO:GO:0045686 GO:GO:0045687 GO:GO:0048709 GO:GO:0050885 MGI_trans_name:Nkx6-2-002 Vega_translation:202866 Vega_translation:OTTMUSP00000029318 goslim_goa:GO:0001071 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043226 goslim_goa:GO:0048856 goslim_goa:GO:0050877 protein_id:EDL17860.1 OTTP:OTTMUSP00000029318 OTTT:OTTMUST00000060125 UniParc:UPI0000024B42
definition	note : transcript_id=ENSMUST00000097974 protein_id : ENSMUSP00000095588 translation : MDANRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKTPALGSLGAQLPLGTPHGISDILGRPVGAAGGGLLGSLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPGVVQGSPWRDPRLAGSAQAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGSAGDAL

name	Nkx6-2 (ENSMUSG00000041309) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS40170.1 RefSeq_peptide:NP_899071 RefSeq_mRNA:NM_183248.3 Vega_transcript:Nkx6-2-001 Vega_transcript:OTTMUST00000060124 Uniprot/SPTREMBL:D3Z4R4 EMBL:AC112670 EMBL:CH466531 GO:GO:0000122 GO:GO:0000978 GO:GO:0001078 GO:GO:0003700 GO:GO:0005634 GO:GO:0010454 GO:GO:0010455 GO:GO:0021912 GO:GO:0021913 GO:GO:0022010 GO:GO:0030154 GO:GO:0031018 GO:GO:0043565 GO:GO:0045686 GO:GO:0045687 GO:GO:0048709 GO:GO:0050885 MGI_trans_name:Nkx6-2-001 Vega_translation:202867 Vega_translation:OTTMUSP00000029317 goslim_goa:GO:0001071 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043226 goslim_goa:GO:0048856 goslim_goa:GO:0050877 protein_id:EDL17860.1 OTTP:OTTMUSP00000029317 OTTT:OTTMUST00000060124 UniParc:UPI0000024B42
definition	note : transcript_id=ENSMUST00000106095 protein_id : ENSMUSP00000101701 translation : MDANRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKTPALGSLGAQLPLGTPHGISDILGRPVGAAGGGLLGSLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPGVVQGSPWRDPRLAGSAQAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGSAGDAL

name
type	misc_feature
link
xref
definition	note : contig AC112670.11 31628..161683(1)

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Nkx6-2 (ENSMUSG00000041309)
Transcript ID	ENSMUST00000097974

Reports
substitution
cSNPs	0
Insertion	6
Deletion	5
SNPs	+1kb 139582805(c.-266G>T), 139583165(c.-626T>A), 139583210(c.-671T>C), 139583327(c.-788G>C), 139583339(c.-800C>T), 139583350(c.-811G>A), 139583394(c.-855A>T), 139583515(c.-976C>A), 139583671(c.-1132C>G), 139583683(c.-1144A>T), 139583684(c.-1145A>G), 139583808(c.-1269T>C), 139583868(c.-1329G>A), 139583999(c.-1460A>G), 139584143(c.-1604G>A), 139584144(c.-1605T>G), 139585308(c.-2769C>T), 139586159(c.-3620C>A), 139586212(c.-3673A>C), 139586354(c.-3815G>A), 139586400(c.-3861C>T), 139586415(c.-3876A>T), 139586542(c.-4003T>C), 139586820(c.-4281A>G), 139587044(c.-4505C>T), 139587085(c.-4546G>C), 5'UTR 139582595(c.-56T>C), 139582776(c.-237T>C), CDS 3'UTR 139581430(c.4C>T), INTRON 139579667(c.570-46A>C), 139579684(c.570-63A>G), 139579741(c.570-120A>T), 139579815(c.570-194A>T), 139579910(c.570-289G>A), 139580038(c.570-417T>C), 139580094(c.570-473A>G), 139580589(c.569+276A>G), 139580646(c.569+219C>T), 139580665(c.569+200C>G), 139580733(c.569+132T>C), -1kb 139574380(c.7054C>T), 139574386(c.7048C>T), 139574410(c.7024G>C), 139574596(c.6838C>T), 139574659(c.6775T>C), 139574916(c.6518G>A), 139574930(c.6504G>A), 139575066(c.6368C>T), 139575077(c.6357G>C), 139575280(c.6154C>A), 139575296(c.6138C>A), 139575341(c.6093A>C), 139575421(c.6013A>T), 139575533(c.5901T>C), 139575705(c.5729C>T), 139575852(c.5582C>T), 139575869(c.5565G>A), 139575878(c.5556T>C), 139575895(c.5539G>A), 139575964(c.5470G>A), 139576011(c.5423G>A), 139576012(c.5422T>C), 139576017(c.5417G>A), 139576124(c.5310A>T), 139576135(c.5299A>G), 139576136(c.5298G>A), 139576339(c.5095A>G), 139576536(c.4898G>A), 139576817(c.4617T>C), 139576843(c.4591T>C), 139577115(c.4319G>A), 139577116(c.4318G>T), 139577135(c.4299G>A), 139577136(c.4298G>A), 139577285(c.4149A>T), 139577300(c.4134G>A), 139577329(c.4105A>G), 139577330(c.4104G>A), 139577355(c.4079C>T), 139577598(c.3836T>A), 139577644(c.3790A>G), 139577696(c.3738C>T), 139577744(c.3690T>C), 139577873(c.3561A>G), 139578011(c.3423G>C), 139578528(c.2906C>G), 139579332(c.*2102T>G),
Insertions	+1kb 139583850 (c.-1312_-1311insG), 139584552 (c.-2014_-2013insCGG), 139586821 (c.-4283_-4282insG), 5'UTR CDS 3'UTR INTRON -1kb 139575879 (c.5554_5555insCCT), 139575923 (c.5510dupT), 139576393 (c.5039_*5040dupGG),
Deletions	+1kb 139584409 (c.-1871delC), 139585024 (c.-2494_-2486delCAGTTGGAG), 139587771 (c.-5240_-5233delCTGCCCAG), 5'UTR CDS 3'UTR INTRON 139579996 (c.570-377_570-376delTC), 139580066 (c.570-449_570-446delTTTT), -1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000097974)	MDANRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKTPALGSLGAQLPLGTPHGI SDILGRPVGAAGGGLLGSLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG VVQGSPWRDPRLAGSAQAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR PLDPNSDDEKITRLLKKHKPSNLALVSPCGGSAGDAL*
MSMv4 transcript	MDANRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKTPALGSLGAQLPLGTPHGI SDILGRPVGAAGGGLLGSLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG VVQGSPWRDPRLAGSAQAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR PLDPNSDDEKITRLLKKHKPSNLALVSPCGGSAGDAL*
homology	100.00 (278 / 278)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Nkx6-2 (ENSMUSG00000041309)
Transcript ID	ENSMUST00000097974

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GAGGCCCCTGTACTAGAAAAGAAATTAAGGCCTAGTGGGCTCTACAGGCC GGGTCTATAGCCAGTGCTCTGTCCGCTAGACTGCAAACGCATACCCAGCCGAAGTCAGTG AGTGTGGTGATCCTTTGGTCCTGGTTCTTGAATTCCAAAACCGCTGCATTCTGGCCCGAG GTCCAGCTTGCCAGAAAGCAATAAGCAGGAGAATTCTGGTCCTGGGCCTCAAAGTCTGGA CACGGGTAACCTCCTAGGTGAGTGCCTAATAAGCATAAAAGTTCAAGGGGGAAGGCCTAG CCTCTCCCAGATACCCCAACCCAACTTCAAGGATTTCAGAACGGGAGGACAGCATAGGTT GTGTGTGTGTGTGTGTGTGTGGTAGTAAGGTCACCGGTTGCCTGGAGCCATCTTAAGTCA GTGAGTTCAGTTGGCAGAGTTTGGCAGATCTGAGGAAACCAAATCTATTTGGTCCCTAGA CTCCACCCTTTTTCGTTCAAAATCCACCCAGAAAAGTTATACCCACAAGTTCACAACAGC CCACACCACCACGAGCTGGGAAGGAGAAGGAACCCCAGTACAGGGCTTGGGCCCTGACCC AAGATGGAGTGCCCTGACCTGTGGCGTCCAGCCGTCCCAGGCACTTCCCTGAACTAAGCA TACTGAGCTTGAGCTTTCGGAGTGGATCTTGAAATCTACATTCTTTCGGTCGATAAAATA TGTTCTCGTATTTTTTCCTGATTTTCCCATTAAAACCTTTGCCTAACTAAACTCCCATCC AACGGGATTTATTTCATCTCTAGGGAGATAAATCAGGGGGCAAATTTACAGTCCCGGAGG CACCTGCCTCGCTAATGGGCCCTTCATGGAGTGCATGGCCGGCGGGGGCGCGCGCAGACG GGCCGGACGCTGGCCAATGGCCTGGTCGCCAGTGCCTTCAGCCAATCAGCGCGCGCGCCG CGCCCAGGCCCCGCGGTTATCAGTGCGTCCATCCCGCGCGGCTCCGCTCC
1	EXON 1	139582134	139582797	-	1	664	GACCTGCCCCGGAGCCGCCACCGCCGCTCCCGCCGCCCTTAGTATCCCTGCCTTCTCTCT GACCGCCGCCCATTCAGCGCAACAGCCGTCGGTCCTCTCGCTTTCCCGTAGGGGCCGTCG GCGTTCGTTTGAAACGCGGTCCACCCGTCCCAGCGTAGCCGGCGCTCTTCGGCGCCGCGC GCAAACTTCCCGAGCCGGCGGGCGCGGGCGGTGGCAGCGGGGCCCGGATGGGCGCCCGGG TCGGAGGCGGCGGCGCCCATGGACGCTAACCGCCCGGGTGCGTTTGTGCTGAGCAGCGCG CCTTTAGCCGCGCTGCACAACATGGCTGAGATGAAGACGTCGCTGTTCCCCTACGCGCTG CAGGGCCCGGCGGGCTTCAAGACACCCGCCCTAGGCAGCCTTGGCGCGCAGTTGCCTCTA GGCACTCCGCACGGCATCAGCGACATCCTGGGACGGCCGGTGGGCGCAGCGGGTGGCGGC CTCCTAGGAAGTCTGCCCCGTCTCAACGGGCTCGCCTCGTCTGCAGGTGTCTACTTCGGG CCCGCAGCCGCCGTGGCTCGGGGCTACCCCAAGCCGCTGGCGGAACTGCCTGGGCGCCCG CCCATCTTCTGGCCTGGGGTGGTGCAGGGCTCTCCCTGGAGGGACCCGCGACTGGCCGGC TCCG
	INTRON 1 - 2	139582054	139582133			80	GTAAGTGGCCCGCGCGGGATTCGGT..........TGCGCTCACTGGCTCTTCTTCGCAG
2	EXON 2	139581881	139582053	1	0	173	CCCAAGCCGGCGGGGTCCTGGATAAGGATGGCAAGAAGAAACACTCGCGGCCGACTTTCT CCGGCCAGCAGATCTTCGCGCTGGAGAAGACTTTCGAGCAGACCAAGTATTTGGCAGGCC CAGAGCGCGCGCGGCTTGCCTACTCTCTGGGCATGACCGAGAGCCAAGTGAAG
	INTRON 2 - 3	139581689	139581880			192	GTGAGCTCGAAATGGGCCGGGGTCC..........GATGATCCCTCCCCCAAACCCCCAG
3	EXON 3	139580865	139581688	0	-	824	GTGTGGTTCCAGAATCGGCGGACCAAGTGGCGCAAGCGGCACGCGGCAGAGATGGCGTCG GCTAAAAAGAAGCAAGACTCGGATGCCGAGAAGCTGAAGGTGGGTGGCTCAGACGCGGAG GACGATGACGAATACAACCGGCCCCTGGACCCCAACTCCGATGACGAGAAGATCACGCGG CTTCTCAAAAAGCACAAACCCTCGAACTTGGCGCTCGTTAGCCCGTGTGGTGGCAGCGCG GGGGACGCCTTGTGAGGATGCGGCCAGGCCGGAGAACCCGAGAACCGGGACTCGCGGCAT GCCCCGACGCCAGCCGCCCAGCCGCAGTGTGTATATATATTTTTACAGAATAAGTTATAA AGCGGACGTTGGCGCGGCCTTGGCGTGATGGCGGAGTACGGGGTTTGGGCCGATCACTTT GTATAATCAATAAATTATTTAACACGTCCTCGTCGGAGCCGTGGCTCCCAAGGCTGCACA TCGTGTTTCTTCCATACGGAGCTGGCACCAGCGGGCGGGCAGGACCCTGCAGACCCACCT AGCCTGTTCTCTCTGTGGGCGCCAGAGACTGGCGCAGGGGGGCGCGACAGTGCTTGATGA CGACCTGGGGCCCGTGTGCGCCTTTGGTTCAGAGGTTGAGTGCCTGGTGATGGTCCCAGA GCGCACGGTGATGGCAGCTTGCAGGAGCGCAGAGGTTGTGAGACTGAGCATGCCCCGGGT CGTGGGAAGGCAGCTTCAGCCGCCGGGGAAGGGAAGGACACCGCTGCGCAGTGCTTGGAG GAGCTGGGCCAGCAGGGAACTCAGCGGAAGAGACCCCAAAGCAG
	INTRON 3 - 4	139579622	139580864			1243	GTATGATTTCTATTTTCTGTGTAGA..........CACCATGATCAATTTTATTGCTTAG
4	EXON 4	139579376	139579621	-	-	246	GAACCGAGCAGTCACTTCCAGAGGCCTTCACGGGAAGGACCCACAGCTGGAACCCACGGA CAACCGCTGCGGACATGGCACATTGGCAAGCAGCGACCATGGCAGTCACAGACCCGACCC TGGCATCAAGGACACAGGCCGGCCTTGAGTGATTTCTAGGGAAACCGACATTAACTCGCG CCTCCGCCCCATCCAGGAACTGTAGTGTTCAGAAGTAAATCAATAAAAGCACGCTGTGTT TCCTCA
	3' upstream sequence						GCAGGCTCCGCAGGCGCCTTCCGTGGTTCTCAGTGCTGGGTGCGAGTCCAGGCAACAGGC TGTGCCCAGCATCACCCGTCGCTTTTCTGCCAGGTTTACACACAGCCCATGCTAGAAGCA ATCTGTGGGAAGTGGACGAGGCTACTTCTAATTCTCCCACAAGATTATGGTTTTAATGTA GGCTACTTGGCACCATAAAACGGTAACAAAAGACAGACAAAACAGTTTACAAAATTCTTA AAAGGTACACCCAGGCTAGCTATAAACTTCACATTCAGTTCTTAATATTACACAGAAAAG GCAGAAGAGTGACAAACTGCTAGTACAGGCAGATCACAGGGCCCCTCGCCCTGGGCACTG GCTAGGCCTTGTCTCAGGAACAGGTGCCGACTGCTGATGGAGTCGCCATTCATCTAGACT GCGGTTCTGCCTGCTCAGGACACTCGTGCACTCATACTGGAAAGTATATTCAGCATAAGT TTTGGTAAGATTTATAAATTATTTTTAAAAAGTATATATTTATATGTATTTATATATATA AAAATGGAAAGCAGCTGCAGTGTGATTCTCACGCCACGTAACATGGCAGTAGAGTCAGAC CTCGGGCCTCGGGCTTGGGCACACGTGGCAGCCTGGCTGCCTGGGCTAGTGCCCGGCACA CTCCTCCTGGCAGAGAGGGACGCTGGACACCTGGGGCTCTAAATGGAGAAGCTTCCTCCA CAGACAATTGTTAAAAATGGAAAACTGTGAAGTCTAAAATACAGGCGCTCTGCTGTCTGT TAGAGTTTTGGCAATAGGACTGTGGCTTGATTACACCCAATATGTCTACAATGTCACGTG ACAGACAGGACAGTGAGGTATGTGAGGCTTTCCGGAGGTCCGGAGGCTGAAGCGAAGTGT GGGGCCGGCCGTCTAGCAGGTGAGGCTTGGGCGGTTCCGATGCAGCTGTTAGGAGGATGA GTTGGATACACTGCTACAGGGAGGCCTCTCGAGGATCCTC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Nkx6-2 (ENSMUSG00000041309)
Transcript ID	ENSMUST00000097974

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 278 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information