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Target CDS Information

Gene Symbol (Gene ID) Trbv31 (ENSMUSG00000076499)
Cross Reference
EMBL AC117678
MGI_trans_name Trbv31-201
UCSC uc009bpz.2
UniParc UPI0001F79031
Uniprot/SPTREMBL A0A075B5J5
Definition protein_id:ENSMUSP00000100101
translation:
MLYSLLAFLLGMFLVSAQTIHQWPVAEIKAVGSPLSLGCTIKGKSSPNLYWYWQATGGTL
QQLFYSITVGQVESVVQLNLSASRPKDDQFILSTEKLLLSHSGFYLCAWSL

Chromosome 6
Length
Position(start - end)
679
41557691 - 41558371
Orient to Chromosome minus
Link Location : (6:41557691-41558371)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trbv31 (ENSMUSG00000076499)
Transcript ID ENSMUST00000103300
Reports
substitution
cSNPs4
Insertion11
Deletion8
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num3
synonymous substitutions 41557770 (p.Pro85Pro),
non-synonymous substitutions 41557772 (p.Pro85Ser), 41557912 (p.Gly38Glu), 41558337 (p.Met12Thr),
B6 transcript
(ENSMUST00000103300)
MLYSLLAFLLGMFLVSAQTIHQWPVAEIKAVGSPLSLGCTIKGKSSPNLYWYWQATGGTL
QQLFYSITVGQVESVVQLNLSASRPKDDQFILSTEKLLLSHSGFYLCAWSL
MSMv4 transcript
MLYSLLAFLLGTFLVSAQTIHQWPVAEIKAVGSPLSLECTIKGKSSPNLYWYWQATGGTL
QQLFYSITVGQVESVVQLNLSASRSKDDQFILSTEKLLLSHSGFYLCAWSL
homology97.30 (111 / 111)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trbv31 (ENSMUSG00000076499)
Transcript ID ENSMUST00000103300
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCTGCCCAGCATCATTACACTTCTTGTGTCTCTGGCATCTTCAGCTCTTA
CCTGCCAGATCTACCCCCTTGTGAATCCCTGCGTCTTGGCTGTTTGCTTGCGCTTTAAAG
GCAATGTTTGTAAGAGTGCTTGCTGTGTATCGGGCAAAACATATCTTTGAGCCATTTGGC
ATTTGTTGGTGTTGTAGTCCTTCTTACTGGGTATTATTTGTCACATCTTAAACACGAGAC
AAGTAAGGATCAGAATTAACACAGGCTTTCTACACAGCAAGAGGAATGAACTACAATATT
GACCTGGACCCATCTAATTGTGAGGCCTTGTAATATGTTGTTTAAGTAAAGGAACAAATA
AAATAGATCTAGATGGGCCTTTGGAGGCACATGGAACACAGGCCAGCTTTGATTCCTTTA
GTAATTAATTCTGCCTGTCTGGGTCTCTAGTCCTACCTACCAAGGTTGAAGAGGATGTGC
ACTTCTCCTGTTGGATGACATAACAGGTTCCTTTACTCAGAACTACACTTTTCTCCTTTG
AAAACTCCAGAGACCTAAATCTCTTGAGCTGTTATCTGCCTTCATGTCTTTCCTTTCAAA
CAGTGTAGGTGACATACCTTGGCACTGACTAAAATAAAATCCCCTTTTGTTATTTTACTA
GCAATAGTTGCTCTGATGGTCAAAGACACCAGGAAGTCTCCAGGAGTACCTAGAGTGTTG
CCCCTTGTTTGCCCATAAATAACGAACCATTAACTATATTTACATACCAGAACATCGGGC
AGGAGTGTAATAATGCTAACAAGCGCAGGGCACAGCTGGTTCCCAGGGAGGGTGGGGATG
ATTCACCACCTGCTTAAGAAAGCCCAGCCTCATTTCCTCCCCAGCTCAAGGGGATCTAAA
CTTCCACTCTGGCAGCCAGTCTTGAGGTAGGAGGGGCCTGTGCATCTCTGGCTTAGAAAA
GGAAGTACAAGTGCAGAGTAGACAAGCCTAGACAAAGACCATCTTGAACT
1 EXON 1 41558329 41558371 - 1 43
ATGCTGTACTCTCTCCTTGCCTTTCTCCTGGGCACGTTCTTGG
INTRON 1 - 2 41557982 41558328 347
GTGGGTGCATTCCCCTGTTGAAAAC..........AAATGACTCTATTTCTTTACAGGTG
2 EXON 2 41557691 41557981 1 - 291
TTAGTGCTCAGACTATCCATCAATGGCCAGTTGCCGAGATCAAGGCTGTGGGCAGCCCAC
TGTCTCTGGAGTGTACCATAAAGGGGAAATCAAGCCCTAACCTCTACTGGTACTGGCAGG
CCACAGGAGGCACCCTCCAGCAACTCTTCTACTCTATTACTGTTGGCCAGGTAGAGTCGG
TGGTGCAACTGAACCTCTCAGCTTCCAGGTCCAAGGACGACCAATTCATCCTAAGCACGG
AGAAGCTGCTTCTCAGCCACTCTGGCTTCTACCTCTGTGCCTGGAGTCTCA
3' upstream sequence
CACTGAGTAGGGTGGGGCAGACATCTGTGCAAAAACCACACCCTCTCTTTAGTCCTTCCT
CCCTCACTAGGAACCCTCACTAGGGATGGGTGGAGGGGGTTTGCCACCGAATTTCTGGCT
GATAGTCAAGTTGAAGTCTGGAAAACAACATGATTCAAGTCAGAAGTCGCCAAAGACATT
TATTAAACTCGTTATCAGTGACTCACATATGCAGAACCTGTGAGTTGCCTACACACAGTA
AAATTTCCAGTTTGTAGTATCCAGTAGTAGGATATTGTATACCCGTCCTTAAACCAGGCT
ACTCTTGTCTAAACACTCTATACTTGTTCTACATTACTATTGAGGTACGCTGGGCATGCT
CATGGATATATGTGGCAGAGAGAAGTGAGATATACCTGTATCTGTATCTGATACCAGGTA
GGAGAATCTTATGTAACTCAATTAGTTAATTTCACCTCTGGGAGTATCTCCATCATTCAT
CTTTCTGCTGAGGTTAGAAAGTTTATAAAGGCTGATACTCAAGACATCAATCAAGGAGGA
ACAAGATGTCATTAGATAGCTATGCAAGATAGAACTTAATATAGAAAAGTTCTTAGCATT
TTGTCTAAGATCAAATGTAAAAGTTAATATGGAAAATGTTCATTCAGGAATTTTTACTGC
TGCTTGCGTCCTGTTGCTTGTTTGTTTGTTTGTTTGTTTTGTTTGACACAAATTTCTACT
ATGTAGTCTGCACTTGCCTCAATTTTGAAGCAATCCCCCTGCCTCATCCAAACAAGCATG
TGTTACCAGGTCTGATAGTGGTTGTATTGTCATTTATACTTCCCAGTTTAAACTTCTGTC
TCTCCTCTACTCTTCTGTAGCAAAACAGACAAACAGATGGTAGCATAAGAAACACAGGAG
ACTGAGGGTAAAGAGGAGGAGTGTGTGTGTGACAGAAAGGTTAAAATGGAATAGTGACTA
GGATGGAAATGAAGAAGAGGAAGAGACTGATGTGAATGGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Trbv31 (ENSMUSG00000076499)
Transcript ID ENSMUST00000103300
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 111 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information