MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Il1r1 (ENSMUSG00000026072)

Cross Reference

CCDS	CCDS48246.1
EMBL	AC135085, AC167168, AK048550
Fantom	C130072K02
GO	GO:0004871, GO:0004908, GO:0004909, ...show all
goslim_goa	GO:0003674, GO:0004871, GO:0005575, ...show all
MGI_trans_name	Il1r1-002
OTTP	OTTMUSP00000068976
OTTT	OTTMUST00000128133
protein_id	BAC33372.1
RefSeq_mRNA	NM_001123382.1

RefSeq_mRNA_predicted	XM_006495714, XM_006495715, XM_006495716, ...show all
RefSeq_peptide	NP_001116854
RefSeq_peptide_predicted	XP_006495777.1, XP_006495778.1, XP_006495779.1, ...show all
UCSC	uc007atw.1
UniParc	UPI00000E9930
Uniprot/SPTREMBL	Q8C833
Vega_transcript	Il1r1-002, OTTMUST00000128133
Vega_translation	179120, OTTMUSP00000068976

Definition

protein_id:ENSMUSP00000110443
translation:

MKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKN
DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGL
CYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDK
LLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADP
GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISE
VKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFK
VDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFG
YKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQ
EGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPA
QRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG

Chromosome

Length
Position(start - end)

31153
40282239 - 40313393

Orient to Chromosome

plus

Link

Location : (1:40282239-40313393)
/

Detail Map

name	Il1r1 (ENSMUSG00000026072)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Il1r1 note : interleukin 1 receptor, type I [Source:MGI Symbol;Acc:MGI:96545]

name	Il1r1 (ENSMUSG00000026072)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027241

name	Il1r1 (ENSMUSG00000026072)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000114795

name	Il1r1 (ENSMUSG00000026072) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS35547.1 Uniprot/SWISSPROT:P13504 RefSeq_peptide:NP_032388 RefSeq_mRNA:NM_008362.2 RefSeq_mRNA_predicted:XM_006495713 RefSeq_peptide_predicted:XP_006495776.1 Vega_transcript:Il1r1-001 Vega_transcript:OTTMUST00000128132 Uniprot/SPTREMBL:Q32MH0 UCSC:uc007atv.1 ChEMBL:CHEMBL2189148 EMBL:BC109135 EMBL:CH466536 EMBL:M20658 GO:GO:0002020 GO:GO:0004871 GO:GO:0004908 GO:GO:0004908 GO:GO:0004909 GO:GO:0005161 GO:GO:0005161 GO:GO:0005515 GO:GO:0005515 GO:GO:0005615 GO:GO:0005634 GO:GO:0005886 GO:GO:0009314 GO:GO:0009986 GO:GO:0009986 GO:GO:0010286 GO:GO:0014069 GO:GO:0016020 GO:GO:0016020 GO:GO:0016021 GO:GO:0019221 GO:GO:0030424 GO:GO:0030728 GO:GO:0035255 GO:GO:0043234 GO:GO:0050727 GO:GO:0070498 GO:GO:0070498 GO:GO:0070498 GO:GO:0070555 GO:GO:0070555 GO:GO:0070555 GO:GO:0070849 GO:GO:0071333 GO:GO:0071559 GO:GO:0071731 MGI_trans_name:Il1r1-001 PDB:1OU3 Vega_translation:179119 Vega_translation:OTTMUSP00000068975 goslim_goa:GO:0003674 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0019899 protein_id:AAA39279.1 protein_id:AAI09136.1 protein_id:EDL14572.1 OTTP:OTTMUSP00000068975 OTTT:OTTMUST00000128132 Reactome:R-MMU-1280215 Reactome:R-MMU-168256 Reactome:R-MMU-446652 Reactome:R-MMU-449147 UniParc:UPI0000028A19
definition	note : transcript_id=ENSMUST00000027241 protein_id : ENSMUSP00000027241 translation : MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG

name	Il1r1 (ENSMUSG00000026072) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48246.1 RefSeq_peptide:NP_001116854 RefSeq_mRNA:NM_001123382.1 RefSeq_mRNA_predicted:XM_006495714 RefSeq_mRNA_predicted:XM_006495715 RefSeq_mRNA_predicted:XM_006495716 RefSeq_mRNA_predicted:XM_006495717 RefSeq_mRNA_predicted:XM_006495718 RefSeq_mRNA_predicted:XM_006495719 RefSeq_mRNA_predicted:XM_006495720 RefSeq_mRNA_predicted:XM_006495721 RefSeq_mRNA_predicted:XM_006495722 RefSeq_mRNA_predicted:XM_006495723 RefSeq_mRNA_predicted:XM_011238436.1 RefSeq_peptide_predicted:XP_006495777.1 RefSeq_peptide_predicted:XP_006495778.1 RefSeq_peptide_predicted:XP_006495779.1 RefSeq_peptide_predicted:XP_006495780.1 RefSeq_peptide_predicted:XP_006495781.1 RefSeq_peptide_predicted:XP_006495782.1 RefSeq_peptide_predicted:XP_006495783.1 RefSeq_peptide_predicted:XP_006495784.1 RefSeq_peptide_predicted:XP_006495785.1 RefSeq_peptide_predicted:XP_006495786.1 RefSeq_peptide_predicted:XP_011236738.1 Vega_transcript:Il1r1-002 Vega_transcript:OTTMUST00000128133 Uniprot/SPTREMBL:Q8C833 UCSC:uc007atw.1 Fantom:C130072K02 EMBL:AC135085 EMBL:AC167168 EMBL:AK048550 GO:GO:0004871 GO:GO:0004908 GO:GO:0004909 GO:GO:0005161 GO:GO:0005515 GO:GO:0016020 GO:GO:0019221 GO:GO:0050727 GO:GO:0070498 GO:GO:0070555 MGI_trans_name:Il1r1-002 Vega_translation:179120 Vega_translation:OTTMUSP00000068976 goslim_goa:GO:0003674 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0007165 goslim_goa:GO:0008150 protein_id:BAC33372.1 OTTP:OTTMUSP00000068976 OTTT:OTTMUST00000128133 UniParc:UPI00000E9930
definition	note : transcript_id=ENSMUST00000114795 protein_id : ENSMUSP00000110443 translation : MKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG

name
type	STS
link
xref	UniSTS_NUM:124926 UniSTS:M20658
definition	note : map_weight=1 standard_name : M20658

name
type	STS
link
xref	UniSTS_NUM:178382 UniSTS:M20658 WI_MRC-RH:1153
definition	note : map_weight=1 standard_name : M20658

name
type	misc_feature
link
xref
definition	note : contig AC135085.3 64386..214594(1)

name
type	misc_feature
link
xref
definition	note : contig AC167168.5 1..133528(-1)

name	Il1r1 (ENSMUSG00000026072)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000128258 Vega_transcript:OTTMUST00000128258 MGI_trans_name:Il1r1-003 OTTT:OTTMUST00000128258
definition	note : processed_transcript note : transcript_id=ENSMUST00000195402

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Il1r1 (ENSMUSG00000026072)
Transcript ID	ENSMUST00000114795

Reports
substitution
cSNPs	12
Insertion	26
Deletion	47
SNPs	-1kb 40261603(c.-20636A>T), 40261729(c.-20510T>C), 40261795(c.-20444T>C), 40261822(c.-20417C>T), 40262435(c.-19804G>T), 40262577(c.-19662C>T), 40262735(c.-19504A>G), 40262819(c.-19420A>G), 40263174(c.-19065T>C), 40263599(c.-18640C>T), 40263622(c.-18617A>G), 40263683(c.-18556T>C), 40263718(c.-18521A>C), 40263719(c.-18520C>G), 40263785(c.-18454G>A), 40263905(c.-18334G>T), 40263943(c.-18296G>A), 40263982(c.-18257C>T), 40264013(c.-18226G>A), 40264018(c.-18221A>T), 40264145(c.-18094T>G), 40264247(c.-17992C>T), 40264311(c.-17928C>A), 40264320(c.-17919G>A), 40264329(c.-17910G>C), 40264476(c.-17763T>C), 40264560(c.-17679G>A), 40264612(c.-17627C>G), 40264619(c.-17620A>G), 40264665(c.-17574A>C), 40264683(c.-17556T>C), 40264684(c.-17555G>A), 40264767(c.-17472T>C), 40264775(c.-17464T>C), 40264777(c.-17462A>G), 40264874(c.-17365A>G), 40264889(c.-17350T>A), 40264901(c.-17338A>C), 40264910(c.-17329A>G), 40264934(c.-17305C>T), 40265011(c.-17228A>G), 40265025(c.-17214A>G), 40265027(c.-17212T>C), 40265093(c.-17146T>G), 40265160(c.-17079T>C), 40265265(c.-16974T>C), 40265359(c.-16880G>A), 40265373(c.-16866T>C), 40265555(c.-16684C>T), 40265607(c.-16632C>G), 40265888(c.-16351G>T), 40265922(c.-16317G>C), 40265999(c.-16240A>T), 40266227(c.-16012C>G), 40266431(c.-15808C>T), 40266564(c.-15675G>A), 5'UTR CDS 40282271(c.33G>T), 40293121(c.60C>T), 40293594(c.433G>T), 40294790(c.519C>T), 40294895(c.624G>C), 40297946(c.693T>G), 40302341(c.903T>G), 40302415(c.977A>G), 40310332(c.1038G>A), 40310422(c.1128T>C), 40313096(c.1425C>T), 40313333(c.1662G>C), 3'UTR 40266658(c.-230G>C), 40266659(c.-229G>C), 40313429(c.36A>G), 40313485(c.92A>G), 40313508(c.115T>C), 40313597(c.204C>T), 40313634(c.241T>C), 40313639(c.246A>G), 40313742(c.349C>A), 40313837(c.444C>T), 40313862(c.469T>C), 40313891(c.498G>A), 40313913(c.520G>A), 40314039(c.646T>C), 40314118(c.725C>T), 40314296(c.903C>A), 40314348(c.955C>T), 40314635(c.1242A>T), 40314726(c.1333T>C), 40314939(c.1546T>G), 40314954(c.1561C>T), 40315192(c.1799A>C), 40315329(c.1936C>G), 40315474(c.2081G>A), 40315489(c.2096C>T), 40315887(c.2494G>A), 40315906(c.2513G>A), 40315945(c.2552G>A), 40316003(c.2610T>A), INTRON 40267073(c.-7+192G>T), 40267321(c.-7+440C>T), 40267500(c.-7+619G>C), 40267678(c.-7+797T>C), 40267722(c.-7+841T>C), 40267789(c.-7+908T>C), 40267890(c.-7+1009A>T), 40267970(c.-7+1089A>G), 40268022(c.-7+1141T>C), 40268053(c.-7+1172A>G), 40268057(c.-7+1176T>C), 40268058(c.-7+1177G>A), 40268075(c.-7+1194T>G), 40268085(c.-7+1204A>G), 40268089(c.-7+1208C>T), 40268189(c.-7+1308G>A), 40268190(c.-7+1309C>G), 40268473(c.-7+1592G>T), 40268474(c.-7+1593C>T), 40268479(c.-7+1598C>T), 40268611(c.-7+1730T>G), 40268654(c.-7+1773T>G), 40269866(c.-7+2985C>G), 40270022(c.-7+3141A>T), 40270187(c.-7+3306C>A), 40270226(c.-7+3345C>A), 40270300(c.-7+3419G>T), 40270313(c.-7+3432T>A), 40270314(c.-7+3433A>G), 40270384(c.-7+3503C>T), 40270529(c.-7+3648C>T), 40270712(c.-7+3831T>C), 40270765(c.-7+3884G>A), 40270858(c.-7+3977T>C), 40270862(c.-7+3981T>G), 40271053(c.-7+4172C>A), 40271073(c.-7+4192T>C), 40271094(c.-7+4213C>T), 40271098(c.-7+4217A>T), 40271116(c.-7+4235C>T), 40271164(c.-7+4283T>G), 40271192(c.-7+4311C>T), 40271279(c.-7+4398G>A), 40271439(c.-7+4558G>A), 40271579(c.-7+4698C>T), 40271662(c.-7+4781A>C), 40271765(c.-7+4884T>C), 40271801(c.-7+4920A>G), 40271967(c.-7+5086G>A), 40272883(c.-7+6002A>G), 40274236(c.-7+7355C>T), 40274420(c.-7+7539C>T), 40274473(c.-7+7592C>T), 40274480(c.-7+7599G>C), 40274493(c.-7+7612A>C), 40274722(c.-6-7511A>G), 40275053(c.-6-7180T>G), 40275133(c.-6-7100G>A), 40275720(c.-6-6513A>C), 40276137(c.-6-6096A>G), 40276324(c.-6-5909C>T), 40276615(c.-6-5618C>T), 40277328(c.-6-4905T>A), 40277518(c.-6-4715A>G), 40277709(c.-6-4524T>C), 40278245(c.-6-3988C>T), 40278322(c.-6-3911T>C), 40278831(c.-6-3402C>T), 40278841(c.-6-3392C>T), 40279163(c.-6-3070C>T), 40279389(c.-6-2844G>A), 40279773(c.-6-2460T>C), 40280080(c.-6-2153G>A), 40280189(c.-6-2044G>A), 40280192(c.-6-2041A>T), 40280226(c.-6-2007C>T), 40280992(c.-6-1241C>T), 40280999(c.-6-1234A>G), 40281208(c.-6-1025G>T), 40281211(c.-6-1022A>G), 40281237(c.-6-996T>C), 40281241(c.-6-992A>G), 40281243(c.-6-990T>C), 40281301(c.-6-932G>A), 40281346(c.-6-887A>C), 40281357(c.-6-876A>G), 40281371(c.-6-862A>G), 40281448(c.-6-785A>G), 40281796(c.-6-437C>T), 40281850(c.-6-383C>T), 40281926(c.-6-307C>T), 40281933(c.-6-300C>G), 40282026(c.-6-207A>G), 40282050(c.-6-183T>C), 40282099(c.-6-134T>C), 40282130(c.-6-103G>C), 40282200(c.-6-33T>C), 40282348(c.58+52T>C), 40282396(c.58+100T>C), 40282463(c.58+167A>G), 40282524(c.58+228T>C), 40282538(c.58+242T>C), 40282545(c.58+249A>T), 40282639(c.58+343T>C), 40282659(c.58+363T>C), 40282673(c.58+377G>A), 40282751(c.58+455G>A), 40282766(c.58+470A>G), 40282827(c.58+531A>G), 40283001(c.58+705T>C), 40283063(c.58+767C>A), 40283109(c.58+813A>G), 40283222(c.58+926A>G), 40283224(c.58+928A>T), 40283232(c.58+936T>C), 40283233(c.58+937G>A), 40283307(c.58+1011C>T), 40283348(c.58+1052T>C), 40283364(c.58+1068G>A), 40283394(c.58+1098C>T), 40283799(c.58+1503A>G), 40283914(c.58+1618A>C), 40283992(c.58+1696T>C), 40284078(c.58+1782A>G), 40284099(c.58+1803G>A), 40284133(c.58+1837A>G), 40284431(c.58+2135C>T), 40284442(c.58+2146T>C), 40284632(c.58+2336T>G), 40284747(c.58+2451C>T), 40284777(c.58+2481C>T), 40284780(c.58+2484C>T), 40284853(c.58+2557G>A), 40284999(c.58+2703G>T), 40285084(c.58+2788T>C), 40285124(c.58+2828A>G), 40285188(c.58+2892A>G), 40286136(c.58+3840T>C), 40286208(c.58+3912C>G), 40286220(c.58+3924T>C), 40286276(c.58+3980T>A), 40286381(c.58+4085G>A), 40286384(c.58+4088T>C), 40286427(c.58+4131C>A), 40286597(c.58+4301G>C), 40286631(c.58+4335A>G), 40286701(c.58+4405A>G), 40286757(c.58+4461T>C), 40286765(c.58+4469C>T), 40286769(c.58+4473T>C), 40286797(c.58+4501A>G), 40286814(c.58+4518G>A), 40286817(c.58+4521T>C), 40287212(c.58+4916C>T), 40287346(c.58+5050T>C), 40287722(c.59-5398T>G), 40287751(c.59-5369T>C), 40287956(c.59-5164G>T), 40287969(c.59-5151T>A), 40288008(c.59-5112C>T), 40288075(c.59-5045T>C), 40288220(c.59-4900A>C), 40288224(c.59-4896T>C), 40288239(c.59-4881T>C), 40288427(c.59-4693C>T), 40288428(c.59-4692A>G), 40288445(c.59-4675C>T), 40288461(c.59-4659T>C), 40288486(c.59-4634G>C), 40288607(c.59-4513T>C), 40288678(c.59-4442C>A), 40288716(c.59-4404C>A), 40288788(c.59-4332A>G), 40288944(c.59-4176T>C), 40288954(c.59-4166C>A), 40289021(c.59-4099G>C), 40289264(c.59-3856A>G), 40289327(c.59-3793A>G), 40289561(c.59-3559A>G), 40289577(c.59-3543A>G), 40289631(c.59-3489T>G), 40289646(c.59-3474T>C), 40289722(c.59-3398C>T), 40289749(c.59-3371T>C), 40289759(c.59-3361G>A), 40289850(c.59-3270A>T), 40289927(c.59-3193T>A), 40290037(c.59-3083C>T), 40290061(c.59-3059A>G), 40290105(c.59-3015A>T), 40290218(c.59-2902G>A), 40290332(c.59-2788C>T), 40290479(c.59-2641T>C), 40290516(c.59-2604G>A), 40290526(c.59-2594A>G), 40290570(c.59-2550A>C), 40290672(c.59-2448G>A), 40290680(c.59-2440C>T), 40290689(c.59-2431C>A), 40290716(c.59-2404C>T), 40290813(c.59-2307T>G), 40290835(c.59-2285C>T), 40290855(c.59-2265T>C), 40290856(c.59-2264T>A), 40290874(c.59-2246T>G), 40290883(c.59-2237T>A), 40290888(c.59-2232G>A), 40290981(c.59-2139C>T), 40290989(c.59-2131A>T), 40291001(c.59-2119A>G), 40291022(c.59-2098A>G), 40291044(c.59-2076G>T), 40291046(c.59-2074G>A), 40291118(c.59-2002C>T), 40291455(c.59-1665T>C), 40291477(c.59-1643A>T), 40291523(c.59-1597C>T), 40291550(c.59-1570T>C), 40291553(c.59-1567A>T), 40291593(c.59-1527C>T), 40291619(c.59-1501C>T), 40291629(c.59-1491G>A), 40291630(c.59-1490T>A), 40291649(c.59-1471G>A), 40291708(c.59-1412A>C), 40291714(c.59-1406C>G), 40291747(c.59-1373T>G), 40291784(c.59-1336T>C), 40291786(c.59-1334T>C), 40291847(c.59-1273T>C), 40291978(c.59-1142C>T), 40292018(c.59-1102T>A), 40292096(c.59-1024G>C), 40292099(c.59-1021G>A), 40292100(c.59-1020T>G), 40292164(c.59-956G>T), 40292186(c.59-934C>T), 40292395(c.59-725G>A), 40292512(c.59-608A>G), 40292515(c.59-605A>C), 40292722(c.59-398C>T), 40292724(c.59-396A>G), 40292842(c.59-278T>C), 40292971(c.59-149G>A), 40292981(c.59-139G>A), 40292992(c.59-128G>A), 40293011(c.59-109G>A), 40293017(c.59-103G>A), 40293055(c.59-65G>A), 40293061(c.59-59C>T), 40293378(c.296+21C>T), 40293656(c.486+9G>A), 40293684(c.486+37T>C), 40293692(c.486+45C>T), 40293694(c.486+47T>C), 40293719(c.486+72A>G), 40293737(c.486+90T>C), 40293740(c.486+93C>T), 40293773(c.486+126T>C), 40293776(c.486+129A>T), 40293777(c.486+130C>A), 40293793(c.486+146A>G), 40293839(c.486+192C>T), 40293979(c.486+332C>T), 40294000(c.486+353A>G), 40294023(c.486+376C>T), 40294123(c.486+476T>G), 40294154(c.486+507C>A), 40294155(c.486+508G>T), 40294156(c.486+509C>G), 40294159(c.486+512A>G), 40294230(c.487-528C>G), 40294263(c.487-495A>G), 40294395(c.487-363G>T), 40294456(c.487-302C>T), 40294457(c.487-301C>T), 40294472(c.487-286C>A), 40294517(c.487-241T>C), 40294527(c.487-231C>T), 40294605(c.487-153A>G), 40294614(c.487-144C>T), 40294654(c.487-104T>C), 40294662(c.487-96C>T), 40294682(c.487-76T>C), 40294726(c.487-32T>C), 40294734(c.487-24C>T), 40294754(c.487-4T>C), 40294970(c.655+44C>T), 40295068(c.655+142G>C), 40295092(c.655+166T>C), 40295133(c.655+207G>A), 40295175(c.655+249C>G), 40296066(c.655+1140A>T), 40296073(c.655+1147A>G), 40296077(c.655+1151A>G), 40296085(c.655+1159G>T), 40296093(c.655+1167A>G), 40296183(c.655+1257A>G), 40296344(c.655+1418A>G), 40296382(c.655+1456T>C), 40296383(c.655+1457G>A), 40296403(c.655+1477G>A), 40296423(c.656-1486C>T), 40296436(c.656-1473C>T), 40296644(c.656-1265G>C), 40296748(c.656-1161A>G), 40296814(c.656-1095C>T), 40296946(c.656-963T>G), 40297005(c.656-904G>A), 40297015(c.656-894G>C), 40297029(c.656-880T>C), 40297050(c.656-859G>T), 40297095(c.656-814A>G), 40297116(c.656-793A>G), 40297118(c.656-791T>C), 40297196(c.656-713T>G), 40297231(c.656-678G>C), 40297237(c.656-672G>C), 40297253(c.656-656C>A), 40297254(c.656-655G>T), 40297292(c.656-617T>C), 40297320(c.656-589G>A), 40297339(c.656-570T>C), 40297375(c.656-534C>T), 40297386(c.656-523G>A), 40297431(c.656-478C>T), 40297432(c.656-477G>A), 40297482(c.656-427A>T), 40297585(c.656-324C>T), 40297586(c.656-323A>C), 40297695(c.656-214A>G), 40297785(c.656-124T>C), 40297792(c.656-117C>T), 40297810(c.656-99C>T), 40297845(c.656-64G>A), 40297846(c.656-63A>C), 40298002(c.721+28G>A), 40298022(c.721+48G>A), 40299585(c.722-1175C>T), 40299661(c.722-1099T>C), 40299851(c.722-909T>C), 40299854(c.722-906T>C), 40299901(c.722-859A>G), 40300142(c.722-618A>G), 40300164(c.722-596A>G), 40300229(c.722-531C>T), 40300238(c.722-522G>C), 40300259(c.722-501A>G), 40300263(c.722-497T>C), 40300286(c.722-474G>C), 40300383(c.722-377A>G), 40300402(c.722-358G>T), 40300405(c.722-355G>A), 40300461(c.722-299T>A), 40300486(c.722-274C>T), 40300493(c.722-267G>A), 40300511(c.722-249T>C), 40300612(c.722-148A>G), 40300642(c.722-118A>T), 40300674(c.722-86A>T), 40300941(c.839+64G>C), 40300948(c.839+71C>A), 40300966(c.839+89T>C), 40301065(c.839+188G>A), 40301106(c.839+229T>C), 40301164(c.839+287G>T), 40301171(c.839+294A>G), 40301206(c.839+329C>A), 40302130(c.840-148A>C), 40302136(c.840-142A>G), 40302148(c.840-130A>G), 40302182(c.840-96A>G), 40302225(c.840-53A>G), 40302455(c.991+26A>G), 40302536(c.991+107T>C), 40302592(c.991+163G>A), 40302600(c.991+171A>G), 40302740(c.991+311T>C), 40302855(c.991+426G>A), 40302918(c.991+489C>T), 40302965(c.991+536T>A), 40302967(c.991+538G>C), 40302981(c.991+552G>A), 40302991(c.991+562G>A), 40303124(c.991+695C>A), 40303239(c.991+810G>A), 40303255(c.991+826T>C), 40303339(c.991+910T>C), 40303477(c.991+1048G>A), 40303486(c.991+1057A>G), 40303529(c.991+1100A>G), 40303541(c.991+1112C>A), 40303557(c.991+1128A>T), 40303602(c.991+1173G>T), 40303640(c.991+1211A>G), 40303855(c.991+1426G>T), 40303883(c.991+1454T>C), 40304055(c.991+1626C>A), 40304204(c.991+1775T>C), 40304441(c.991+2012G>A), 40304444(c.991+2015G>C), 40304776(c.991+2347A>C), 40304835(c.991+2406G>A), 40305083(c.991+2654A>G), 40305412(c.991+2983C>T), 40305525(c.991+3096G>A), 40305531(c.991+3102T>A), 40305718(c.991+3289A>G), 40305844(c.991+3415G>T), 40305848(c.991+3419A>C), 40305854(c.991+3425G>T), 40305888(c.991+3459T>C), 40306008(c.991+3579T>C), 40306025(c.991+3596T>C), 40306052(c.991+3623A>G), 40306217(c.991+3788A>T), 40306370(c.992-3916A>C), 40306466(c.992-3820A>G), 40306486(c.992-3800A>C), 40306491(c.992-3795G>A), 40310076(c.992-210A>T), 40310261(c.992-25C>G), 40310511(c.1135+82C>T), 40310642(c.1135+213G>C), 40310841(c.1135+412C>T), 40311034(c.1135+605G>A), 40311098(c.1135+669A>C), 40311421(c.1136-926A>G), 40311499(c.1136-848G>T), 40311798(c.1136-549T>C), 40311869(c.1136-478G>A), 40311890(c.1136-457G>A), 40311916(c.1136-431G>C), 40312599(c.1303+85A>C), 40312749(c.1304-226T>A), 40312872(c.1304-103G>A), +1kb 40316234(c.2841T>G), 40316420(c.3027T>C), 40316509(c.3116C>T), 40316512(c.3119A>G), 40317110(c.3717C>T), 40317425(c.4032A>G), 40317438(c.4045C>T), 40317760(c.4367C>T), 40318266(c.4873G>A), 40318276(c.4883C>T), 40318308(c.4915A>T), 40318311(c.4918A>C), 40318485(c.5092G>A), 40319647(c.6254C>T), 40319667(c.6274T>G), 40319679(c.6286T>A), 40319717(c.6324C>T), 40319723(c.6330G>C), 40319741(c.6348G>A), 40319893(c.6500T>C), 40319902(c.6509T>C), 40319958(c.6565T>C), 40319980(c.6587A>C), 40319983(c.6590A>C), 40320020(c.6627C>T), 40320087(c.6694A>G), 40320272(c.6879T>C), 40320313(c.6920T>C), 40320384(c.6991G>A), 40320420(c.7027C>G), 40320472(c.7079A>G), 40320550(c.7157A>G), 40320611(c.7218G>C), 40320767(c.7374C>T), 40320783(c.7390A>T), 40321009(c.*7616T>C),
Insertions	-1kb 40261618 (c.-20621_-20620insT), 40262461 (c.-19778_-19777insAC), 5'UTR CDS 3'UTR 40315122 (c.1733dupT), 40316047 (c.2661_*2663dupTTA), INTRON 40269765 (c.-7+2884_-7+2885insC), 40279817 (c.-6-2415_-6-2414insAA), 40280618 (c.-6-1611_-6-1609dupTTG), 40281043 (c.-6-1190_-6-1189insG), 40282448 (c.58+152_58+153insCG), 40286675 (c.58+4379_58+4380insGGG), 40288552 (c.59-4566_59-4565insGTGTA), 40288919 (c.59-4199_59-4198dupCT), 40289091 (c.59-4024dupT), 40292100 (c.59-1018_59-1017insGAA), 40292293 (c.59-820dupA), 40294403 (c.487-355dupA), 40297674 (c.656-227_656-224dupGTGT), 40299931 (c.722-829dupC), 40299948 (c.722-805dupA), 40299956 (c.722-802dupA), 40300943 (c.839+66_839+67insTG), 40303670 (c.991+1241dupG), 40303673 (c.991+1244_991+1245insT), 40304404 (c.991+1976_991+1977insATT), 40304595 (c.991+2169_991+2170insTTCGAG), 40305377 (c.991+2949_991+2950insTTA), +1kb
Deletions	-1kb 40261879 (c.-20359_-20356delCTTC), 40263514 (c.-18724_-18722delAAG), 40263920 (c.-18318_-18310delAGCAGGGTT), 5'UTR CDS 3'UTR 40313474 (c.83_84delCA), 40313732 (c.340delG), 40313753 (c.364delC), 40313756 (c.364delC), 40314298 (c.908_909delCT), INTRON 40267042 (c.-7+192_-7+193delGT), 40268302 (c.-7+1429_-7+1432delCCCC), 40271648 (c.-7+4770delA), 40272702 (c.-7+5835_-7+5836delCA), 40274591 (c.-6-7636delG), 40276413 (c.-6-5817_-6-5815delCCA), 40281285 (c.-6-947delG), 40283716 (c.58+1421delA), 40284355 (c.58+2060_58+2064delTGAAT), 40285311 (c.58+3018_58+3021delTTTG), 40286334 (c.58+4039_58+4041delTTT), 40286427 (c.58+4141_58+4144delTATA), 40286658 (c.58+4363_58+4367delATTTT), 40287665 (c.58+5370delG), 40287679 (c.58+5384delT), 40290933 (c.59-2184_59-2182delTAA), 40292617 (c.59-495_59-487delTTTTTTTTT), 40293834 (c.486+189delT), 40294512 (c.487-245delT), 40295234 (c.655+315_655+316delGG), 40295792 (c.655+880_655+885delTGTTCA), 40295996 (c.655+1075_655+1076delCT), 40296836 (c.656-1072_656-1067delTGGCCC), 40296930 (c.656-964_656-963delTT), 40298148 (c.721+182delT), 40298295 (c.721+322_721+323delTT), 40299352 (c.721+1380delG), 40302469 (c.991+42delG), 40302772 (c.991+350_991+352delTCT), 40306413 (c.992-3872_992-3866delCCGAGGA), 40306426 (c.992-3859_992-3858delGG), 40309927 (c.992-356_992-350delACACCCC), 40311482 (c.1136-858delG), +1kb 40319220 (c.5828delG), 40319449 (c.6057delT), 40319769 (c.6377delT), 40320097 (c.6705_6706delTG), 40320107 (c.6715_6716delTG), 40320117 (c.6725_6726delTG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	9
non-synonymous num	3
synonymous substitutions	40293121 (p.Asp20Asp), 40294790 (p.Ser173Ser), 40294895 (p.Pro208Pro), 40297946 (p.Pro231Pro), 40302341 (p.Val301Val), 40310332 (p.Thr346Thr), 40310422 (p.Pro376Pro), 40313096 (p.Tyr475Tyr), 40313333 (p.Leu554Leu),
non-synonymous substitutions	40282271 (p.Met11Ile), 40293594 (p.Val145Leu), 40302415 (p.Gln326Arg),
B6 transcript (ENSMUST00000114795)	MKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKN DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGL CYSTQATFPQRLHIAGDGSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDK LLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADP GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISE VKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFK VDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFG YKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQ EGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPA QRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG*
MSMv4 transcript	MKVLLGLICLIVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKN DSKTPISADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGL CYSTQATFPQRLHIAGDGSLVCPYLSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDK LLVRNVAEEHRGDYICRMSYTFRGKQYPVTRVIQFITIDENKRDRPVILSPRNETIEADP GSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAEDYQFVEHPSTKRKYTLITTLNISE VKSQFYRYPFICVVKNTNIFESAHVRLIYPVPDFKNYLIGGFIILTATIVCCVCIYKVFK VDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEGQFG YKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQ EGIKIVLLELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPA QRRSPLSKHRLLTLDPVRDTKEKLPAATHLPLG*
homology	99.48 (574 / 574)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Il1r1 (ENSMUSG00000026072)
Transcript ID	ENSMUST00000114795


..........TGGGTTTCTAGGCTGCATACGGGAATAAGGCAGGAAATTCAAGGCCTGTC
CACGCTGGAAGGCATGCAGGAAATGGCCATGTGCTCTATCTAGAGGTATTAAGCAATCAC
TGTTTCTTTGCAGTTGTATTGCAGGGTGGTGCATTATATGTGGAAGAAGCTGGGGGGTGA
GGGTAGGGAGCACGGAATGGTTGGTGCTATTTCCAGGACCACAATGTCCTCCTTGCACCC
TGTCCTAAAATTTGGCTATTCTTGATTTTTTTTTTCATGTGCTTTCTGAGAACTCTGGAA
TTCTCCTTTGCATAGCAAATCCTACAATTAATTGGGATATGATAAGCGGACCTGTTTTTC
AGCCTGGTGGACAGCAGTAAAGCAACCAAGTAAAAAGCCTATGAACTATCAACTCTTCAC
CAGTGCTCTTTAACTCCTCCTACCTATAAAGGCTGCGGGCCTTTATACCAAAAGAGGAAA
TCAAGGTATTGCAAACTTAATGACTCGGCTAAGTGCTCAAAGCCAGTTCGAGGCACACAG
TACTGGGCTCCAGTTGTGCTGAGCACAGAACTGTGTTTTCCTCAGGATCTGATACCCCAT
GGGTCACCAGCTCGGTTCTTGTTAGGTGGCACAATCTGGTTGCGATGTAGAGGTGAGTTG
ACCCATCTAATTTTGGTTTGGGTGGGAACACAGAGGCTGCTCAGAGGAGCCAAGCCATCT
GGGAATCAGAGCCATTCTTCCTGGAATCTGGGACATCTGGCAAGGATGCAGGGATTTTGG
AATGCCCCCAAGGAGATGCAGTGACCCTCCAAATGCCCCCAAGGAGATGCAGAGACCCTC
CATTGCCTCCACCCCTGGAGGGATACAGAGACCCTGGAATGTTCTGCGTGGATGTAGATA
TTCTGGGATGTGGGGCAGAAACTCCACAACCCAACCTATCCGGCTCCCAGGGCGGGGCAT
TGGCACTGGGCCAGCTAGCTCCGAGCCCAAGGCTGAGGACGCTGGCCTGC
AGTCTCCGCCCGCTGCACGCCCCCGCGGGCGGCTCAGAGTGGGAGCAGCGTGCTGCTCAGAAGGTCTTAGCTCCTGCGGGGTTCCAGGAGCCGCCTGGGAGCGCGGCGCCCACCTAGAAGGGCGGGAGCCCAGCTGGTGCCCGCCTGCCCCAGAGCGGAAGGAATGTGACCCCCGAGCGAGCGCGGAGCAGCCCTTGAGCGGCTCCCAGGGCTCCGGTTGCTCCCGGCCTGAACGGGTTTAGTTCGGAGCTGCTGGATTGTTGAACATCGCCACTGGGGCACCCGGGCACGCCCAG
GTAGGAGAAAACTAGAGAGTTCCTG..........TTCTTCCCTTCTTCTGTTTCCCCAG
GAGAATATGAAAGTGCTACTGGGGCTCATTTGTCTCATTGTGCCTCTGCTGTCGCTGGAGATTG
GTAAGTCACATGTTTCTTCCACTCT..........TGCTTCTCCTTTCTCTCTTTTAAAG
ATGTATGTACAGAATATCCAAATCAGATCGTTTTGTTTTTATCTGTAAATGAAATTGATATTCGCAAGTGTCCTCTTACTCCAAATAAAATGCACGGCGACACCATAATTTGGTACAAGAATGACAGCAAGACCCCCATATCAGCGGACCGGGACTCCAGGATTCATCAGCAGAATGAACATCTTTGGTTTGTACCTGCCAAGGTGGAGGACTCAGGATATTACTATTGTATAGTAAG
GTAAGAAAGGGATGCATGTATATGT..........ATTTCCATCTTTTACTTTGTTTTAG
AAACTCAACTTACTGCCTCAAAACTAAAGTAACCGTAACTGTGTTAGAGAATGACCCTGGCTTGTGTTACAGCACACAGGCCACCTTCCCACAGCGGCTCCACATTGCCGGGGATGGAAGTCTTGTGTGCCCTTATTTGAGTTATTTTAAAGATGAAAATAATGAGTTACCCGAGGTCCAGTGGTATAAG
GTAATTTCATTTTCAATGTGATATT..........CTTCTTTTTATTTATTCTTGTCTAG
AACTGTAAACCTCTGCTTCTTGACAACGTGAGTTTCTTCGGAGTAAAAGATAAACTGTTGGTGAGGAATGTGGCTGAAGAGCACAGAGGGGACTATATATGCCGTATGTCCTATACGTTCCGGGGGAAGCAATATCCCGTCACACGAGTAATACAATTTATCACAATAG
GTGAGTCACAGCTCTGACCCCTGGT..........AACTCTGTGGGTTTTCCTTTTGCAG
ATGAAAACAAGAGGGACAGACCTGTTATCCTGAGCCCGCGGAATGAGACGATCGAAGCTGACCCAG
GTAAGCAGGCTTCCCAGGGTGTGGT..........TGGAGTCAAATGCATTGTTTTTCAG
GATCAATGATACAACTGATCTGCAACGTCACGGGCCAGTTCTCAGACCTTGTCTACTGGAAGTGGAATGGATCAGAAATTGAATGGAATGATCCATTTCTAGCTGAAGACTATCAATT
GTGAGTTTGCCAATCAATTTTGATG..........CTCCTCACCCCCTTCTCTTGAACAG
TGTGGAACATCCTTCAACCAAAAGAAAATACACACTCATTACAACACTTAACATTTCAGAAGTGAAAAGCCAGTTTTATCGCTATCCGTTTATCTGTGTTGTTAAGAACACAAATATTTTTGAGTCGGCGCATGTGCGGTTAATATACCCAG
GTAAGTATCAAAGGCTTACTTAAAA..........GATTCTCTTCTCTTTTCTGTTGTAG
TCCCTGACTTCAAGAATTACCTCATCGGGGGCTTTATCATCCTCACAGCTACAATTGTATGCTGTGTGTGCATCTATAAAGTCTTCAAGGTTGACATAGTGCTTTGGTACAGGGACTCCTGCTCTGGTTTTCTTCCCTCAAAAG
GTATAATAATTTTATATTCCATGAA..........TAAATGTATTTTATTTCCCTTTTAG
CTTCAGATGGAAAGACATACGATGCCTATATTCTTTATCCCAAGACCCTGGGAGAGGGGTCCTTCTCAGACTTAGATACTTTTGTTTTTAAACTGTTGCCTGAGGTCTTGGAGGGACAGTTTGGATACAAGCTGTTCATTTATGGAAGGGATGACTATGTTGGAGAAG
GTATGTAAATGTTTCTTGTGAAGTT..........CTGCACTGCACTCTGTGTCTTACAG
ATACCATCGAGGTTACTAATGAAAATGTAAAGAAAAGCAGGAGGCTGATTATCATTCTAGTGAGAGATATGGGAGGCTTCAGCTGGCTGGGCCAGTCATCTGAAGAGCAAATAGCCATATATAATGCTCTCATCCAGGAAGGAATTAAAATCGTCCTGCTTGAGTTGGAGAAAATCCAAGACTATGAGAAAATGCCAGATTCTATTCAGTTCATTAAGCAGAAACACGGAGTCATTTGCTGGTCAGGAGACTTTCAAGAAAGACCACAGTCTGCAAAGACCAGGTTCTGGAAAAACTTAAGATACCAGATGCCAGCCCAACGGAGATCACCATTGTCTAAACACCGCTTACTAACCCTCGATCCTGTGCGGGACACTAAGGAGAAACTGCCGGCAGCAACACACTTACCACTCGGCTAGCATGGCAAAAGTGGGCAGGCCAAGAACTTCGGAATGTCTCCCATCATAAGAGGCTGCAGCTGGGCTGTGCCTCCCAGTAAAACAGTCACGAACCAAACCTGTGCAGTCCCTTGTCCCAGATCACCTGGAACTGGATTGGGAAGAGAACAGGACTTGGTGGCCAGGACCGCTCAGAGAGCCATGGTTGCTCAGGGATGCTGCTCTGGGATGCTTGACTAACAGTCGAGGCAGTGAACTGGGCGTAGGAAGCGTCAGGAAATGGCCACATGTGTGGATGGTTTAATTAGATTCTGTGGAGTCTCACAGTGGGATTGTGGTTGTCTGAGGACACTTTGGGGGGTCGCTGTCCAAGAAGTGGCTCCCCAAAGTATAAGTGCGGGTGAGGTTTACTGATACCCCACAGTGGAAGGCATTTCTTCCAGATATTTTCCAGATACCTTGGCTGCCAAACTTCGTTTTCAAACACTGCGTTTTATTGTGTAGACCTTGAAAACCACAGTTTCAGTGAAGAAGGATTCTATAGGGTTCACTCTTCTGCAGTCACTTTAGCTTTCTGCAGAAGTCTAGATTTTAAATTAACTGTAGAAGGAAGTCAGACACCCACAGGTTTCTTCTAATCAAGCTTCCACCCTGCAATGGCTGTCGCGCCATCTTCCTTCTGTGTTTTACTCGGCTCATTGCTTCTCTGGAGACAAATGCAATGCTTCCTACCCCCGTCCTGTCATAGGCAGTCTGAGGACTCACCTTCACACGTGAGACTTCGCTCTTACCCCAGCCCCCACCGCTGGAGGGGTTTCAATCCCCCACCCTGGGGCTCTTCTGCGCAGAAGCTGAAGTCTACGCTCCTCCCAATCTTTGGTCCCAGTGCCGCTGTTCGCCTTCCTGCTGGTTGATTGCAGAACCACCTCTGAGACCTCTGTACCTGCTCTTGGAATGTCTCTGTCTTTGCCCTGCTGCCCACTTCCCGTGCCTATGATTTGCTCTAGCATTTCTGCCACCTGACAAGGAGAGGAGCTTGCTAAAGTTTAAAGTTTATTTCAACGCTAAGATCCCAACCTTCCGATCTCTGCCTACTCTCAGACTTGGCCAGCCCTCTTGCCTGTCATCCCAACCCTGCTGCTTCTCTGTAAAAGGTTGTTTCTTTACTAGCAGAAATCAGTCTGCAGGGAGGGGTAGTGCGTGTATCTCACTGTTTTCCGTATTGGGAACAGATGGTATAGATTTGCCAAGGCCTTTATTTTTAAGTGTTCTTGGAAAATCGTATTTAAATTTGCAATTATTCTAATTTGATATAGAGAGAAACTGACCTATTTAACAAATGGACTCTCTTAACTCTACTGGACCCAGGCCTTGAACTTTCTGGTTTCTGTCTCTGTGCTCTGACTTTTTGATTTCAGGTCTAGCCCTGTGCACTTACCTCAGTACTCAGTACTTACTCAGTACTAACTCAGTACTCGTGGGAGGACACCCGACCCGGGTGTTCTTTGAGAAGCAGCTGAGTGAGGCATGTTTTGACAGGAGGAACCCAGTTCTTTTCACTGTTGGGATTTATAGCACCTATCTTCAGATTTTTCAGTATGATGTTTCTATTTTCCAATACTGGTTCCCTAACGGTCAACATTTCTTCTCCCAACTAAAAATGTAAGAAGAAAAAAAAATTTTTTTCTTTTTCTCTTTTTTTTTTTTTTTGTGGTACAGAAGTTTTTTGTTTGGTTATTTGTTTGTTTGATTTTAACTAGATGACTGTCTTCAGAATAATCCTCACAGTTCTGGAAGATTGAAAAACCAAGTTCACATGCCAAGAACAAACCCGGTTTTAAGGGTTGAATGTAGGGGGATACCATTCTGTCTTTTAGACTTTCAACATCTGCTATGGTGGAGCACAAATGTTATTTAAAAGCATCTTCTCACCTACATAGAAGTAAACAAAACACAGAATTTGGGATTTTGACTCTTCAGTTTTGACCTCACTTCTCCTGGATCCAACCTGACAGGAGATGACTGGATTGCTGGGGTAGAGAAGGAAAGGCTGTCCCCGACAGCAGCCAGAAGTCTGTGGGAGTGAGGTCATTCCTGACCCATGATGCTTTCAAGGTTTGGTTTTTCTGATAATTATTTTTGCCTGTCATCCCAAAAACGTATTGACATGCGTGTATATTACCTGTGAGTGAGAGTTCTTAGAAACTTGGCCAGAGAGGATAAAGGGGAGAGCAGTGACAGAGAACCGCCGATCTTGTGACACCGGAGTCTGAGGTGGAACAGAGCCAGTGTCAGGAAAGCCCCTCAGCAAGAAAGAAGAGTCATTGCTGGTTCCCAGGGGCAGTCACAGAGGATGAAATACCACATCAAGGCAGTGGGAACTTCCTGCGACTTCTCCTGGTCCTCCCCAGAAGTATCTGGTGTCAGCTGAAGACCATGTGTCCCCCAATACTTAGATTTCACCGTACTTTCTGATGGTGTTTTTAAAAGGCCAAGTGTTGCAAAAGTTTGCACATGCAACCGTATATTAATCACCAGTGTTTAAAACTGGTTTATCAGAATTTATATTTTTATCTCTCCTGCCTTTTGAATTTTACTTATGACAGAGAAAGTATTGAGCCATGACTTTTAAAAAATAATTTATATTTATACTGGTCAATAATGAAGGTTTTTTTTTATTATTAAAGAACTTGATTTTATAATTCTGCAGCAGATGCCAAATGTTATCTATCACAAACCACAAAATTTATGTACAGTGCATATTATTGATCAATAAACTAAACTTGTTTTCCAATAAATTGTTAAAGCCTCTTTTGAGTATCGCTGAAA
GTTGGTTGCTCTGTCCTTTTTCCATCTTACATGCGTTCTAAGGCCTGATAGGAAGGGCCA
GGCCTTTTGCAGGGTGTTCTTGGAGTAGGGGAGCTGAGATCTGTGCTGGTTAGTTTTATG
TCAGATTGACACATGCTAGAGTCACGGGCAAGGAAGGAGCCTCAATTGACAAAATGCATC
CATATTTCTGGGCTGTAGGCAGGCCTGTAGAACATTTCCTTAATTAGTGATTGGTGGGGG
AGGCCCAGCCCATAGTGAGTGGCGCTACTCCTGAGCTGGTGGTCCTGAGTTCTACAAGAA
AGCAGGCTGAGCAAGCCATGCGGGAGCAACCCAGTAAGCAGCAGCCCTCCATGGCCTCTG
CATCAGCTCCTACCTTGTTTCTGTCCTGAGTTCTTCAGTGATGAACAGTGCTGTGGAGGT
ATAAGGCAAAGAAACCTTTCTTCCGAAGTTGGTCATGGTGTTTATCATAACAATGATGAC
TCCAACTAAGACAAGGTATGAGGTTGATGGTCAAACAGGTAGTTCTGTGAACCCTGACTT
CCCTTACTTAGAGCCATCTGTTCCTTTGTTTATGGAGTAGATTAAGAGCTAGGCTGCTGC
TCTGTGATAGACCAGTTGCCTAGCTGAGGCCCTGGACTTGATCCTCAACACATCACTAAA
CTGATGATAAACAAATGTAGATCTTATATTCTGTTATTGTTGCCATTCTAGCCTTTATGG
GTAAATATCCATAGCTCTCAGACCAATAAGCAAGGTGTCTGAAATATATGTACTATGAAG
CGTTGAGTTCAGTGGCCTTCATTTTATTGAGTAAACCACTCAATAAAAAGTTAAAATAGT
AGGTATGCAGAAGTTTGCAGTCTGGTGTCTGGAAAACTTACTTTTCCTAAATTCCTCACC
CAAAGAATTCAATATGCCAGTGTGCTTTTGTTCTTCGACCAACAAATGTTTGTCTTAGCC
ATGTGTTAGGTCAGATCTAACACTGTTAACACGTCACATA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGGGTTTCTAGGCTGCATACGGGAATAAGGCAGGAAATTCAAGGCCTGTC CACGCTGGAAGGCATGCAGGAAATGGCCATGTGCTCTATCTAGAGGTATTAAGCAATCAC TGTTTCTTTGCAGTTGTATTGCAGGGTGGTGCATTATATGTGGAAGAAGCTGGGGGGTGA GGGTAGGGAGCACGGAATGGTTGGTGCTATTTCCAGGACCACAATGTCCTCCTTGCACCC TGTCCTAAAATTTGGCTATTCTTGATTTTTTTTTTCATGTGCTTTCTGAGAACTCTGGAA TTCTCCTTTGCATAGCAAATCCTACAATTAATTGGGATATGATAAGCGGACCTGTTTTTC AGCCTGGTGGACAGCAGTAAAGCAACCAAGTAAAAAGCCTATGAACTATCAACTCTTCAC CAGTGCTCTTTAACTCCTCCTACCTATAAAGGCTGCGGGCCTTTATACCAAAAGAGGAAA TCAAGGTATTGCAAACTTAATGACTCGGCTAAGTGCTCAAAGCCAGTTCGAGGCACACAG TACTGGGCTCCAGTTGTGCTGAGCACAGAACTGTGTTTTCCTCAGGATCTGATACCCCAT GGGTCACCAGCTCGGTTCTTGTTAGGTGGCACAATCTGGTTGCGATGTAGAGGTGAGTTG ACCCATCTAATTTTGGTTTGGGTGGGAACACAGAGGCTGCTCAGAGGAGCCAAGCCATCT GGGAATCAGAGCCATTCTTCCTGGAATCTGGGACATCTGGCAAGGATGCAGGGATTTTGG AATGCCCCCAAGGAGATGCAGTGACCCTCCAAATGCCCCCAAGGAGATGCAGAGACCCTC CATTGCCTCCACCCCTGGAGGGATACAGAGACCCTGGAATGTTCTGCGTGGATGTAGATA TTCTGGGATGTGGGGCAGAAACTCCACAACCCAACCTATCCGGCTCCCAGGGCGGGGCAT TGGCACTGGGCCAGCTAGCTCCGAGCCCAAGGCTGAGGACGCTGGCCTGC
1	EXON 1	40266586	40266881	-	-	296	AGTCTCCGCCCGCTGCACGCCCCCGCGGGCGGCTCAGAGTGGGAGCAGCGTGCTGCTCAG AAGGTCTTAGCTCCTGCGGGGTTCCAGGAGCCGCCTGGGAGCGCGGCGCCCACCTAGAAG GGCGGGAGCCCAGCTGGTGCCCGCCTGCCCCAGAGCGGAAGGAATGTGACCCCCGAGCGA GCGCGGAGCAGCCCTTGAGCGGCTCCCAGGGCTCCGGTTGCTCCCGGCCTGAACGGGTTT AGTTCGGAGCTGCTGGATTGTTGAACATCGCCACTGGGGCACCCGGGCACGCCCAG
	INTRON 1 - 2	40266882	40282232			15351	GTAGGAGAAAACTAGAGAGTTCCTG..........TTCTTCCCTTCTTCTGTTTCCCCAG
2	EXON 2	40282233	40282296	-	1	64	GAGAATATGAAAGTGCTACTGGGGCTCATTTGTCTCATTGTGCCTCTGCTGTCGCTGGAG ATTG
	INTRON 2 - 3	40282297	40293119			10823	GTAAGTCACATGTTTCTTCCACTCT..........TGCTTCTCCTTTCTCTCTTTTAAAG
3	EXON 3	40293120	40293357	1	2	238	ATGTATGTACAGAATATCCAAATCAGATCGTTTTGTTTTTATCTGTAAATGAAATTGATA TTCGCAAGTGTCCTCTTACTCCAAATAAAATGCACGGCGACACCATAATTTGGTACAAGA ATGACAGCAAGACCCCCATATCAGCGGACCGGGACTCCAGGATTCATCAGCAGAATGAAC ATCTTTGGTTTGTACCTGCCAAGGTGGAGGACTCAGGATATTACTATTGTATAGTAAG
	INTRON 3 - 4	40293358	40293457			100	GTAAGAAAGGGATGCATGTATATGT..........ATTTCCATCTTTTACTTTGTTTTAG
4	EXON 4	40293458	40293647	2	0	190	AAACTCAACTTACTGCCTCAAAACTAAAGTAACCGTAACTGTGTTAGAGAATGACCCTGG CTTGTGTTACAGCACACAGGCCACCTTCCCACAGCGGCTCCACATTGCCGGGGATGGAAG TCTTGTGTGCCCTTATTTGAGTTATTTTAAAGATGAAAATAATGAGTTACCCGAGGTCCA GTGGTATAAG
	INTRON 4 - 5	40293648	40294757			1110	GTAATTTCATTTTCAATGTGATATT..........CTTCTTTTTATTTATTCTTGTCTAG
5	EXON 5	40294758	40294926	0	1	169	AACTGTAAACCTCTGCTTCTTGACAACGTGAGTTTCTTCGGAGTAAAAGATAAACTGTTG GTGAGGAATGTGGCTGAAGAGCACAGAGGGGACTATATATGCCGTATGTCCTATACGTTC CGGGGGAAGCAATATCCCGTCACACGAGTAATACAATTTATCACAATAG
	INTRON 5 - 6	40294927	40297908			2982	GTGAGTCACAGCTCTGACCCCTGGT..........AACTCTGTGGGTTTTCCTTTTGCAG
6	EXON 6	40297909	40297974	1	1	66	ATGAAAACAAGAGGGACAGACCTGTTATCCTGAGCCCGCGGAATGAGACGATCGAAGCTG ACCCAG
	INTRON 6 - 7	40297975	40300759			2785	GTAAGCAGGCTTCCCAGGGTGTGGT..........TGGAGTCAAATGCATTGTTTTTCAG
7	EXON 7	40300760	40300877	1	2	118	GATCAATGATACAACTGATCTGCAACGTCACGGGCCAGTTCTCAGACCTTGTCTACTGGA AGTGGAATGGATCAGAAATTGAATGGAATGATCCATTTCTAGCTGAAGACTATCAATT
	INTRON 7 - 8	40300878	40302277			1400	GTGAGTTTGCCAATCAATTTTGATG..........CTCCTCACCCCCTTCTCTTGAACAG
8	EXON 8	40302278	40302429	2	1	152	TGTGGAACATCCTTCAACCAAAAGAAAATACACACTCATTACAACACTTAACATTTCAGA AGTGAAAAGCCAGTTTTATCGCTATCCGTTTATCTGTGTTGTTAAGAACACAAATATTTT TGAGTCGGCGCATGTGCGGTTAATATACCCAG
	INTRON 8 - 9	40302430	40310285			7856	GTAAGTATCAAAGGCTTACTTAAAA..........GATTCTCTTCTCTTTTCTGTTGTAG
9	EXON 9	40310286	40310429	1	1	144	TCCCTGACTTCAAGAATTACCTCATCGGGGGCTTTATCATCCTCACAGCTACAATTGTAT GCTGTGTGTGCATCTATAAAGTCTTCAAGGTTGACATAGTGCTTTGGTACAGGGACTCCT GCTCTGGTTTTCTTCCCTCAAAAG
	INTRON 9 - 10	40310430	40312346			1917	GTATAATAATTTTATATTCCATGAA..........TAAATGTATTTTATTTCCCTTTTAG
10	EXON 10	40312347	40312514	1	1	168	CTTCAGATGGAAAGACATACGATGCCTATATTCTTTATCCCAAGACCCTGGGAGAGGGGT CCTTCTCAGACTTAGATACTTTTGTTTTTAAACTGTTGCCTGAGGTCTTGGAGGGACAGT TTGGATACAAGCTGTTCATTTATGGAAGGGATGACTATGTTGGAGAAG
	INTRON 10 - 11	40312515	40312974			460	GTATGTAAATGTTTCTTGTGAAGTT..........CTGCACTGCACTCTGTGTCTTACAG
11	EXON 11	40312975	40316201	1	-	3227	ATACCATCGAGGTTACTAATGAAAATGTAAAGAAAAGCAGGAGGCTGATTATCATTCTAG TGAGAGATATGGGAGGCTTCAGCTGGCTGGGCCAGTCATCTGAAGAGCAAATAGCCATAT ATAATGCTCTCATCCAGGAAGGAATTAAAATCGTCCTGCTTGAGTTGGAGAAAATCCAAG ACTATGAGAAAATGCCAGATTCTATTCAGTTCATTAAGCAGAAACACGGAGTCATTTGCT GGTCAGGAGACTTTCAAGAAAGACCACAGTCTGCAAAGACCAGGTTCTGGAAAAACTTAA GATACCAGATGCCAGCCCAACGGAGATCACCATTGTCTAAACACCGCTTACTAACCCTCG ATCCTGTGCGGGACACTAAGGAGAAACTGCCGGCAGCAACACACTTACCACTCGGCTAGC ATGGCAAAAGTGGGCAGGCCAAGAACTTCGGAATGTCTCCCATCATAAGAGGCTGCAGCT GGGCTGTGCCTCCCAGTAAAACAGTCACGAACCAAACCTGTGCAGTCCCTTGTCCCAGAT CACCTGGAACTGGATTGGGAAGAGAACAGGACTTGGTGGCCAGGACCGCTCAGAGAGCCA TGGTTGCTCAGGGATGCTGCTCTGGGATGCTTGACTAACAGTCGAGGCAGTGAACTGGGC GTAGGAAGCGTCAGGAAATGGCCACATGTGTGGATGGTTTAATTAGATTCTGTGGAGTCT CACAGTGGGATTGTGGTTGTCTGAGGACACTTTGGGGGGTCGCTGTCCAAGAAGTGGCTC CCCAAAGTATAAGTGCGGGTGAGGTTTACTGATACCCCACAGTGGAAGGCATTTCTTCCA GATATTTTCCAGATACCTTGGCTGCCAAACTTCGTTTTCAAACACTGCGTTTTATTGTGT AGACCTTGAAAACCACAGTTTCAGTGAAGAAGGATTCTATAGGGTTCACTCTTCTGCAGT CACTTTAGCTTTCTGCAGAAGTCTAGATTTTAAATTAACTGTAGAAGGAAGTCAGACACC CACAGGTTTCTTCTAATCAAGCTTCCACCCTGCAATGGCTGTCGCGCCATCTTCCTTCTG TGTTTTACTCGGCTCATTGCTTCTCTGGAGACAAATGCAATGCTTCCTACCCCCGTCCTG TCATAGGCAGTCTGAGGACTCACCTTCACACGTGAGACTTCGCTCTTACCCCAGCCCCCA CCGCTGGAGGGGTTTCAATCCCCCACCCTGGGGCTCTTCTGCGCAGAAGCTGAAGTCTAC GCTCCTCCCAATCTTTGGTCCCAGTGCCGCTGTTCGCCTTCCTGCTGGTTGATTGCAGAA CCACCTCTGAGACCTCTGTACCTGCTCTTGGAATGTCTCTGTCTTTGCCCTGCTGCCCAC TTCCCGTGCCTATGATTTGCTCTAGCATTTCTGCCACCTGACAAGGAGAGGAGCTTGCTA AAGTTTAAAGTTTATTTCAACGCTAAGATCCCAACCTTCCGATCTCTGCCTACTCTCAGA CTTGGCCAGCCCTCTTGCCTGTCATCCCAACCCTGCTGCTTCTCTGTAAAAGGTTGTTTC TTTACTAGCAGAAATCAGTCTGCAGGGAGGGGTAGTGCGTGTATCTCACTGTTTTCCGTA TTGGGAACAGATGGTATAGATTTGCCAAGGCCTTTATTTTTAAGTGTTCTTGGAAAATCG TATTTAAATTTGCAATTATTCTAATTTGATATAGAGAGAAACTGACCTATTTAACAAATG GACTCTCTTAACTCTACTGGACCCAGGCCTTGAACTTTCTGGTTTCTGTCTCTGTGCTCT GACTTTTTGATTTCAGGTCTAGCCCTGTGCACTTACCTCAGTACTCAGTACTTACTCAGT ACTAACTCAGTACTCGTGGGAGGACACCCGACCCGGGTGTTCTTTGAGAAGCAGCTGAGT GAGGCATGTTTTGACAGGAGGAACCCAGTTCTTTTCACTGTTGGGATTTATAGCACCTAT CTTCAGATTTTTCAGTATGATGTTTCTATTTTCCAATACTGGTTCCCTAACGGTCAACAT TTCTTCTCCCAACTAAAAATGTAAGAAGAAAAAAAAATTTTTTTCTTTTTCTCTTTTTTT TTTTTTTTGTGGTACAGAAGTTTTTTGTTTGGTTATTTGTTTGTTTGATTTTAACTAGAT GACTGTCTTCAGAATAATCCTCACAGTTCTGGAAGATTGAAAAACCAAGTTCACATGCCA AGAACAAACCCGGTTTTAAGGGTTGAATGTAGGGGGATACCATTCTGTCTTTTAGACTTT CAACATCTGCTATGGTGGAGCACAAATGTTATTTAAAAGCATCTTCTCACCTACATAGAA GTAAACAAAACACAGAATTTGGGATTTTGACTCTTCAGTTTTGACCTCACTTCTCCTGGA TCCAACCTGACAGGAGATGACTGGATTGCTGGGGTAGAGAAGGAAAGGCTGTCCCCGACA GCAGCCAGAAGTCTGTGGGAGTGAGGTCATTCCTGACCCATGATGCTTTCAAGGTTTGGT TTTTCTGATAATTATTTTTGCCTGTCATCCCAAAAACGTATTGACATGCGTGTATATTAC CTGTGAGTGAGAGTTCTTAGAAACTTGGCCAGAGAGGATAAAGGGGAGAGCAGTGACAGA GAACCGCCGATCTTGTGACACCGGAGTCTGAGGTGGAACAGAGCCAGTGTCAGGAAAGCC CCTCAGCAAGAAAGAAGAGTCATTGCTGGTTCCCAGGGGCAGTCACAGAGGATGAAATAC CACATCAAGGCAGTGGGAACTTCCTGCGACTTCTCCTGGTCCTCCCCAGAAGTATCTGGT GTCAGCTGAAGACCATGTGTCCCCCAATACTTAGATTTCACCGTACTTTCTGATGGTGTT TTTAAAAGGCCAAGTGTTGCAAAAGTTTGCACATGCAACCGTATATTAATCACCAGTGTT TAAAACTGGTTTATCAGAATTTATATTTTTATCTCTCCTGCCTTTTGAATTTTACTTATG ACAGAGAAAGTATTGAGCCATGACTTTTAAAAAATAATTTATATTTATACTGGTCAATAA TGAAGGTTTTTTTTTATTATTAAAGAACTTGATTTTATAATTCTGCAGCAGATGCCAAAT GTTATCTATCACAAACCACAAAATTTATGTACAGTGCATATTATTGATCAATAAACTAAA CTTGTTTTCCAATAAATTGTTAAAGCCTCTTTTGAGTATCGCTGAAA
	3' upstream sequence						GTTGGTTGCTCTGTCCTTTTTCCATCTTACATGCGTTCTAAGGCCTGATAGGAAGGGCCA GGCCTTTTGCAGGGTGTTCTTGGAGTAGGGGAGCTGAGATCTGTGCTGGTTAGTTTTATG TCAGATTGACACATGCTAGAGTCACGGGCAAGGAAGGAGCCTCAATTGACAAAATGCATC CATATTTCTGGGCTGTAGGCAGGCCTGTAGAACATTTCCTTAATTAGTGATTGGTGGGGG AGGCCCAGCCCATAGTGAGTGGCGCTACTCCTGAGCTGGTGGTCCTGAGTTCTACAAGAA AGCAGGCTGAGCAAGCCATGCGGGAGCAACCCAGTAAGCAGCAGCCCTCCATGGCCTCTG CATCAGCTCCTACCTTGTTTCTGTCCTGAGTTCTTCAGTGATGAACAGTGCTGTGGAGGT ATAAGGCAAAGAAACCTTTCTTCCGAAGTTGGTCATGGTGTTTATCATAACAATGATGAC TCCAACTAAGACAAGGTATGAGGTTGATGGTCAAACAGGTAGTTCTGTGAACCCTGACTT CCCTTACTTAGAGCCATCTGTTCCTTTGTTTATGGAGTAGATTAAGAGCTAGGCTGCTGC TCTGTGATAGACCAGTTGCCTAGCTGAGGCCCTGGACTTGATCCTCAACACATCACTAAA CTGATGATAAACAAATGTAGATCTTATATTCTGTTATTGTTGCCATTCTAGCCTTTATGG GTAAATATCCATAGCTCTCAGACCAATAAGCAAGGTGTCTGAAATATATGTACTATGAAG CGTTGAGTTCAGTGGCCTTCATTTTATTGAGTAAACCACTCAATAAAAAGTTAAAATAGT AGGTATGCAGAAGTTTGCAGTCTGGTGTCTGGAAAACTTACTTTTCCTAAATTCCTCACC CAAAGAATTCAATATGCCAGTGTGCTTTTGTTCTTCGACCAACAAATGTTTGTCTTAGCC ATGTGTTAGGTCAGATCTAACACTGTTAACACGTCACATA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Il1r1 (ENSMUSG00000026072)
Transcript ID	ENSMUST00000114795

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 574 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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