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Target CDS Information

Gene Symbol (Gene ID) Kirrel3 (ENSMUSG00000032036)
Cross Reference
CCDS CCDS40574.1
GO GO:0001764, GO:0002121, GO:0005515, ...show all
goslim_goa GO:0002376, GO:0003674, GO:0005575, ...show all
MGI_trans_name Kirrel3-201
Reactome R-MMU-1500931, R-MMU-373753
RefSeq_mRNA NM_001190911.1, NM_026324.3
RefSeq_mRNA_predicted XM_006510563
RefSeq_peptide NP_001177840.1, NP_080600
RefSeq_peptide_predicted XP_006510623.1, XP_006510626.1
UCSC uc009osh.2
UniParc UPI0000183C59
Uniprot/SWISSPROT Q8BR86
Definition protein_id:ENSMUSP00000110801
translation:
MRPFQLDLLFLCFFLFSQELGLQKRGCCLVLGYMAKDKFRRMNEGQVYSFSQQPQDQVVV
SGQPVTLLCAIPEYDGFVLWIKDGLALGVGRDLSSYPQYLVVGNHLSGEHHLKILRAELQ
DDAVYECQAIQAAIRSRPARLTVLVPPDDPIILGGPVISLRAGDPLNLTCHADNAKPAAS
IIWLRKGEVINGATYSKTLLRDGKRESIVSTLFISPGDVENGQSIVCRATNKAIPGGKET
SVTIDIQHPPLVNLSVEPQPVLEDNIVTFHCSAKANPAVTQYRWAKRGHIIKEASGELYR
TTVDYTYFSEPVSCEVTNALGSTNLSRTVDVYFGPRMTSEPQSLLVDLGSDAVFSCAWIG
NPSLTIVWMKRGSGVVLSNEKTLTLKSVRQEDAGKYVCRAVVPRVGAGEREVTLTVNGPP
IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETVNTEEGVI
STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQESVPMAVIIGVAVGAGVAFLVLM
ATIVAFCCARSQRNLKGVVSAKNDIRVEIVHKEPSSGREAEDHTTIKQLMMDRGEFQQDS
VLKQLEVLKEEEKEFQNLKDPTNGYYSVNTFKEHHSTPTISLSSCQPDLRPTGKQRVPTG
MSFTNIYSTLSGQGRLYDYGQRFVLGMGSSSIELCEREFQRGSLSDSSSFLDTQCDSSVS
SSGKQDGYVQFDKASKASASSSHHSQSSSQNSDPSRPLQRRMQTHV

Chromosome 9
Length
Position(start - end)
546175
34489104 - 35035280
Orient to Chromosome plus
Link Location : (9:34489104-35035280)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kirrel3 (ENSMUSG00000032036)
Transcript ID ENSMUST00000115148
Reports
substitution
cSNPs7
Insertion291
Deletion365
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num7
non-synonymous num0
synonymous substitutions 34911818 (p.Val30Val), 35015370 (p.Arg371Arg), 35023547 (p.Leu483Leu), 35028390 (p.Leu537Leu), 35034860 (p.Ser627Ser), 35034869 (p.Thr630Thr), 35035235 (p.Ser752Ser),
non-synonymous substitutions
B6 transcript
(ENSMUST00000115148)
MRPFQLDLLFLCFFLFSQELGLQKRGCCLVLGYMAKDKFRRMNEGQVYSFSQQPQDQVVV
SGQPVTLLCAIPEYDGFVLWIKDGLALGVGRDLSSYPQYLVVGNHLSGEHHLKILRAELQ
DDAVYECQAIQAAIRSRPARLTVLVPPDDPIILGGPVISLRAGDPLNLTCHADNAKPAAS
IIWLRKGEVINGATYSKTLLRDGKRESIVSTLFISPGDVENGQSIVCRATNKAIPGGKET
SVTIDIQHPPLVNLSVEPQPVLEDNIVTFHCSAKANPAVTQYRWAKRGHIIKEASGELYR
TTVDYTYFSEPVSCEVTNALGSTNLSRTVDVYFGPRMTSEPQSLLVDLGSDAVFSCAWIG
NPSLTIVWMKRGSGVVLSNEKTLTLKSVRQEDAGKYVCRAVVPRVGAGEREVTLTVNGPP
IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETVNTEEGVI
STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQESVPMAVIIGVAVGAGVAFLVLM
ATIVAFCCARSQRNLKGVVSAKNDIRVEIVHKEPSSGREAEDHTTIKQLMMDRGEFQQDS
VLKQLEVLKEEEKEFQNLKDPTNGYYSVNTFKEHHSTPTISLSSCQPDLRPTGKQRVPTG
MSFTNIYSTLSGQGRLYDYGQRFVLGMGSSSIELCEREFQRGSLSDSSSFLDTQCDSSVS
SSGKQDGYVQFDKASKASASSSHHSQSSSQNSDPSRPLQRRMQTHV*
MSMv4 transcript
MRPFQLDLLFLCFFLFSQELGLQKRGCCLVLGYMAKDKFRRMNEGQVYSFSQQPQDQVVV
SGQPVTLLCAIPEYDGFVLWIKDGLALGVGRDLSSYPQYLVVGNHLSGEHHLKILRAELQ
DDAVYECQAIQAAIRSRPARLTVLVPPDDPIILGGPVISLRAGDPLNLTCHADNAKPAAS
IIWLRKGEVINGATYSKTLLRDGKRESIVSTLFISPGDVENGQSIVCRATNKAIPGGKET
SVTIDIQHPPLVNLSVEPQPVLEDNIVTFHCSAKANPAVTQYRWAKRGHIIKEASGELYR
TTVDYTYFSEPVSCEVTNALGSTNLSRTVDVYFGPRMTSEPQSLLVDLGSDAVFSCAWIG
NPSLTIVWMKRGSGVVLSNEKTLTLKSVRQEDAGKYVCRAVVPRVGAGEREVTLTVNGPP
IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETVNTEEGVI
STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQESVPMAVIIGVAVGAGVAFLVLM
ATIVAFCCARSQRNLKGVVSAKNDIRVEIVHKEPSSGREAEDHTTIKQLMMDRGEFQQDS
VLKQLEVLKEEEKEFQNLKDPTNGYYSVNTFKEHHSTPTISLSSCQPDLRPTGKQRVPTG
MSFTNIYSTLSGQGRLYDYGQRFVLGMGSSSIELCEREFQRGSLSDSSSFLDTQCDSSVS
SSGKQDGYVQFDKASKASASSSHHSQSSSQNSDPSRPLQRRMQTHV*
homology100.00 (767 / 767)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kirrel3 (ENSMUSG00000032036)
Transcript ID ENSMUST00000115148
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTTTTAGTTCTGTAGTTCCTTGCCCTATCAGGCAAATCAACCCGATCCC
ATCTAAAAAAGATGATCTGCGATAGATGATGACCTTCAGGGCAATTTCTTTCTTATTAAA
AAGCCAGTGTGGTGTTTCATGGTTTTTCCTGGGTGTATACCTCTCCCCCAAATAAAGGAC
AAACTTTGCAAGAAGAGGAAATCAAATACTCTTTCTACACGCCTTAAAATCTCCAATTGA
GCATTAGCAGAAAACCTGGGCAATAGATGTTATTGGTAGTGGACAGAGAGCCACGACAGT
CATTGAAAAATGGCCACTGGGACCATAATAAGCCTGAGTCTGTAGAGTCCTTTGATTTCA
TCGTGGCTTAGTGGGGAGCAGAGGACATGCTCACTGCCAGAGAGCAGGACTTGGAAGCTA
TCCGATGGGGGCTTGGTCCTTCTGCAACTTCTTGGCCAGCAAGTAGCAGAACTGGAAGGT
ACGTGCGATTCTCTGTGGACACCTAGCAGCATGCGGCTCTCTGAGAGATCTCCCAGCTTA
CCCCGCAGGAAACTAAGCGGAGGTAGGGGACCGAGGGGGGGGGGGTATTCAAAGGACAGA
GCACTTGGTGCTAAGGGCCTGGGGACCAGGTCCGGGGGCCTAGTGAAGTCCCCCTCCCAG
GCTATAAGCCTGGAGAAGAAAGACTGGAGAGGGTGCCACCTGCTGGTGAGGGACCCAGCC
TTTCACAGTGGACTCCAAGGAGACCTGGAGTCTGTCTCTGTTGAAAGCTGAATTTAGGCT
GCTTCCCAAGTTGCTGGCTTTCTGCAATCTCTTGATAGCTACCATTCCCAGTGGCTTTGT
GCTCTGAGACCCCGTCCTCTGCGTATCACCCCCTAGATGGTGAGGCTGCCTGCAGGGATG
GTGCTCACCCTCCTTGCCCCTCTTGGATGCGCACTACCGGTCTAAGGACTCTCCAAGCTT
CTCCATCAGGTGGAGCCGTCCTCTCATCGCCTGCCTCCCTCCTCCCTCGC
1 EXON 1 34486126 34486275 - - 150
AGCGAACTGCGAGCAGGCCATCCTACAGAGCCGGGAGGTTAACCGAGCCCCCGGAGGAGG
TGAGGCCGCCAGCCTGCGCGGGCGGAGATGGCGGGGCCTCCGTCGGGGCCGGCGCCGGCG
CCAGAGCCCGGCAGCCTGTGGGTCCTGCAG
INTRON 1 - 2 34486276 34488703 2428
GTATCGCTCGCCTTCTCTCTGCCCC..........CCCCTCCCTCTTCCCCCCGCCCCAG
2 EXON 2 34488704 34489158 - 1 455
CTTCTGTGAAAGGAGCCCTTCTGTCACTCGTCACTCGCTTGCTCGCTCGCCCGCTCGCTA
GCTCGTTCGCTCGCTGTGGGAGGAGCCCGCCAGAGGAAGCCGTGTGCCTGGGATGCCAAG
AACCAGAGAATGGATCTGCTCCGAGTGGGCACATTGCTAAGGATCCCGGCTTCCCGAGGC
GGCTGAAAACAAGCATTTGGTTTCAGCTGCCTGCAGATACCCGGAGACACAACGAGACCT
AAGCGGACCAGAGGAGGGACAGACCGACTGACAGATAGATGGTCGGCGCGAACCCTGGAG
GACCGGCGGCGGAGGCTGAGCACCGCGAGCCCAGCCGCCGCGCTTGAAGAGAAACTAACT
GCACACCCAAGTTGCCCGCCGGCTGCCCGCGCGCTGAGGAATGAGACCTTTCCAGCTGGA
TTTGCTCTTCCTCTGCTTCTTCCTCTTCAGTCAAG
INTRON 2 - 3 34489159 34911783 422625
GTAGGAACCCGGCGCGCCGGAGTTG..........TCACCCACCTATGCTTTCCTTCCAG
3 EXON 3 34911784 34911861 1 1 78
AGCTTGGCCTCCAGAAGAGAGGATGCTGTCTGGTGCTGGGCTACATGGCCAAGGACAAGT
TTCGGAGAATGAATGAAG
INTRON 3 - 4 34911862 34939111 27250
GTCAGTGAGAACCCCACACACACAC..........GACCACTGTGCTTCTCCCTCCCCAG
4 EXON 4 34939112 34939261 1 1 150
GTCAAGTCTACTCCTTCAGCCAGCAACCCCAGGACCAAGTGGTGGTGTCAGGACAGCCAG
TGACTCTGCTGTGTGCCATCCCTGAATATGATGGCTTCGTCCTGTGGATCAAAGATGGCT
TGGCTCTGGGTGTAGGCAGAGACCTCTCAA
INTRON 4 - 5 34939262 34944369 5108
GTGAGTATTTCCAGACTTCCCCCAC..........TACATTTCTCTGCCTTCTTCCCCAG
5 EXON 5 34944370 34944519 1 1 150
GTTACCCCCAGTACCTGGTGGTGGGGAACCACCTCTCAGGAGAGCATCACCTGAAGATCC
TGAGGGCTGAGCTTCAGGATGATGCCGTGTATGAGTGCCAGGCCATCCAGGCTGCCATCC
GGTCCCGCCCTGCACGCCTCACCGTCCTGG
INTRON 5 - 6 34944520 34990934 46415
GTAAGTCACCTACATACAGGTATGC..........AACCTCTCTCCTCCTCTCCCCACAG
6 EXON 6 34990935 34991092 1 0 158
TGCCACCAGATGACCCCATCATCCTAGGGGGGCCTGTGATCAGCCTTCGGGCAGGGGACC
CCCTCAACCTCACCTGCCACGCAGACAATGCCAAGCCTGCGGCTTCCATCATCTGGCTAC
GTAAAGGAGAGGTCATCAATGGAGCCACCTACTCCAAG
INTRON 6 - 7 34991093 35000854 9762
GTGAGCCTGAGGGAGAGAATGGGGG..........CTCTTCTTTCACCATCTCTCTCCAG
7 EXON 7 35000855 35001005 0 1 151
ACCCTGCTTCGAGACGGCAAACGAGAAAGCATTGTCAGCACCCTCTTCATCTCCCCAGGA
GACGTGGAAAATGGACAGAGTATTGTGTGCCGAGCCACCAACAAAGCCATCCCCGGAGGA
AAAGAGACCTCTGTCACCATAGACATCCAGC
INTRON 7 - 8 35001006 35007692 6687
GTGAGTACCAACTGACCCTCTCTGG..........GTATGTGAGTCTCTTCTCCCTGCAG
8 EXON 8 35007693 35007798 1 2 106
ATCCACCGCTTGTCAACTTGTCCGTGGAACCACAGCCGGTATTGGAGGACAACATCGTCA
CGTTCCACTGCTCTGCAAAGGCCAACCCAGCTGTCACCCAGTACAG
INTRON 8 - 9 35007799 35013267 5469
GTGAGCATCACTGCTGTGAAGACAG..........CATAGACCTCTGACCTCCATTGCAG
9 EXON 9 35013268 35013416 2 1 149
GTGGGCCAAACGGGGTCACATCATCAAGGAGGCATCTGGGGAGCTGTATAGGACCACGGT
GGACTACACATACTTCTCAGAGCCTGTATCCTGTGAAGTAACCAATGCCCTGGGCAGCAC
CAACCTCAGCCGCACAGTGGATGTATACT
INTRON 9 - 10 35013417 35015254 1838
GTGAGTGTGGGGGCTCAGGGAACCC..........ATCCTCTCTCTCCTCCCCATCACAG
10 EXON 10 35015255 35015382 1 0 128
TCGGTCCTCGAATGACCTCAGAGCCTCAGTCACTGCTGGTAGATCTGGGCTCCGATGCTG
TCTTCAGCTGTGCGTGGATCGGCAACCCGTCTCTGACCATCGTGTGGATGAAACGGGGTT
CTGGTGTG
INTRON 10 - 11 35015383 35016421 1039
GTGAGTCCTCAGGCCACTCTCCAGG..........ATCTGATCCCTCTCCCTCTTCCTAG
11 EXON 11 35016422 35016548 0 1 127
GTCCTGAGCAATGAAAAGACCCTAACCCTCAAATCTGTCCGCCAAGAGGATGCTGGGAAG
TACGTGTGCCGGGCTGTGGTGCCCCGGGTAGGAGCTGGGGAGAGAGAGGTGACCTTGACT
GTCAATG
INTRON 11 - 12 35016549 35020090 3542
GTAAGAGCCCAAAACACCAAAATGG..........CAACATGATGTCATCTTCCCAACAG
12 EXON 12 35020091 35020191 1 0 101
GACCCCCCATCATCTCCAGCACACAGACCCAGCACGCCCTCCACGGAGAGAAGGGCCAGA
TCAAATGCTTCATCCGGAGCACACCACCGCCTGACCGAATT
INTRON 12 - 13 35020192 35023453 3262
GTGAGTGCTCCTGGGAGGGAAGGTG..........CTCCTAATCCTGCACAATCCCACAG
13 EXON 13 35023454 35023652 0 1 199
GCCTGGTCCTGGAAGGAGAATGTGCTGGAGTCAGGGACATCAGGGCGCTACACAGTGGAG
ACGGTGAACACGGAGGAGGGAGTCATCTCCACACTGACCATTAGCAACATTGTGCGTGCT
GACTTCCAGACCATATACAACTGTACAGCCTGGAACAGCTTTGGCTCTGACACAGAGATC
ATCCGACTCAAGGAACAAG
INTRON 13 - 14 35023653 35028331 4679
GTGAGGACTGCCAGGGTGCCCCGGG..........AGCCTTGTCTGTTTCTTTCCCACAG
14 EXON 14 35028332 35028439 1 1 108
AGTCTGTACCAATGGCCGTCATCATCGGGGTGGCCGTAGGAGCTGGCGTGGCCTTCCTTG
TCCTAATGGCAACCATTGTGGCCTTCTGCTGTGCCCGTTCCCAGAGAA
INTRON 14 - 15 35028440 35029773 1334
GTACGGGAGGGAGACCCGGGATCTC..........CTACACTTTCCTATCTTATGTCCAG
15 EXON 15 35029774 35029883 1 0 110
ATCTCAAAGGTGTTGTATCAGCCAAAAATGATATTCGAGTGGAAATTGTGCACAAGGAGC
CATCTTCTGGCCGGGAGGCTGAGGACCACACCACCATAAAGCAGCTGATG
INTRON 15 - 16 35029884 35034201 4318
GTAAGAGCACAGCCTATGCCCCACT..........CTGAGTAGCCATTTTTGGATTGTAG
16 EXON 16 35034202 35034288 0 0 87
ATGGACCGGGGTGAATTCCAACAAGACTCGGTGCTGAAACAGCTGGAGGTCCTCAAAGAA
GAGGAGAAGGAGTTTCAGAACCTGAAG
INTRON 16 - 17 35034289 35034836 548
GTAAGAGCAGCTGCCTTGGGTCCGG..........TGCCTCTATGTTCTTGCCTACCCAG
17 EXON 17 35034837 35035280 0 - 444
GACCCCACCAACGGCTACTACAGTGTCAACACTTTCAAAGAACACCATTCAACTCCAACC
ATCTCCCTGTCCAGCTGCCAGCCAGACCTGCGTCCGACAGGCAAACAGCGTGTGCCCACA
GGCATGTCCTTCACCAACATCTACAGCACCTTGAGCGGCCAGGGCCGCCTCTACGACTAT
GGACAGAGGTTTGTGCTGGGCATGGGCAGCTCTTCCATTGAGCTTTGTGAGCGGGAGTTT
CAGAGGGGCTCCCTCAGCGACAGCAGCTCCTTCCTGGACACGCAGTGTGACAGCAGCGTC
AGCAGCAGCGGCAAGCAAGATGGCTACGTGCAGTTTGACAAGGCCAGCAAGGCTTCTGCC
TCCTCTTCCCACCATTCCCAGTCCTCTTCCCAGAACTCTGACCCCAGCCGACCCCTGCAG
CGGCGGATGCAGACTCACGTCTGA
3' upstream sequence
GGACCACGCCCTGTGGTGGGGGATGGGCCAAGGAGGAGGACATGGTACATTCTCGTTCTC
CAAGGATTGGGGCTACTTTGCAGAGGACCCTAGAACTGGCCACCTCTGGGGTGGTCTCCG
AGCACCTCTGTTAACACCTTCCTTCGAAGCTCTGATCAAGCACAAATCTGGCTCCCAGGT
GGGAAATGGAGAGTATGCAGCTGAGCGGATAGTGCTCAGGGCCTCTGTCTCTTGCTCTTC
CCTAAAGGTCCCTCAACCACCTTGTCCTCCCATGGGCACTCGTGGCAGCTAGAACTTTGC
TTTTATGAAACTGCCGTCCACTTTCCTAGCTCCTCTTGCTGCCCATAAGCCATCCCTGGT
GTCTGTATTCCTTGCAGCCTTGAGGAACGGAGGACTTTTTCCCAGCACTGAGCTGCTCGG
GAGACCCCAGCCTCCCCACTGTGCATAGCCTATACCACAGAGGCTGGGGCCTGAGAAATG
GCCCTGACCAAGGGAGCAGCTGCCTGGGAGTCCGCCCCCACTTTGTTTGGTGTTTGTGTC
TGTATTCTTGCAGTTCTGTTCTTGGACTTGATACCTCTGCACTTGGTGGTGGGACTGGCC
TATCAGAGTCTAGTGTCCTCAGAGCCGAGGAAGGGAAAGAGGGAGAATGTGAACTCCTGG
AGAACAACTGGCCCAACACACTCTGTGCCAGGCTGTGCAGTTCAGAGCCCTTACCCTCAT
CCTCACCCCCTGCTCCGTGTTCTCCCTTCCTTCCCACAGCACAATCGAGCTAATCCGAGG
AGTGTGAGAACTCCTCTGGTCAGGGTTTTTTGAACAGTTACTGAAGCGTGCTTTCTGGGA
GATGTGGGTTTGAGGGGGTGCTGAAATCTAGGCTGGAGGATGAGACAGACTCTTTCAGCT
GATGACCACAAGGAACAATGATCCATTCTCCAGTAGACAGGACTCTGTGTGCAAGAGGGA
CAGTTTTCTTCACCTCTTTCCCATCACTCCCCACTTAAGA..........

Sequence Detail Report

Gene Symbol (Gene ID) Kirrel3 (ENSMUSG00000032036)
Transcript ID ENSMUST00000115148
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 767 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information