MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Rad9b (ENSMUSG00000038569)

Cross Reference

EMBL	AC093473, AC113285
GO	GO:0000076, GO:0006281, GO:0008408, ...show all
goslim_goa	GO:0000228, GO:0003674, GO:0004518, ...show all
MGI_trans_name	Rad9b-002
OTTP	OTTMUSP00000033000
OTTT	OTTMUST00000066028
RefSeq_mRNA_predicted	XM_006530307.2
RefSeq_peptide_predicted	XP_006530370.1
UCSC	uc012eda.1
UniParc	UPI000620A958

Uniprot/SPTREMBL	D3Z3W7
Vega_transcript	OTTMUST00000066028, Rad9b-002
Vega_translation	195195, OTTMUSP00000033000

Definition

protein_id:ENSMUSP00000113868
translation:

MFFQHYQWSPFATMSDTDLPLNLNCKLAIKSVLPIFRCLNYLERSVEKCTVVARADKCRV
VIQFFGKHGIKRTHNVYFQDSQPLKIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTF
SVTPGNFCLKSLSGELLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSE
VMHAPLAIYFDFPGKPVVLSVEDMLLEANFILATLVDYPSRTSSPQLLPLSQARRSHPIQ
SSAPEDKSRVSQTPESISRAAPKRLFPKDSPDSSSAAETKRASAGQDDIFEVPESVVSDM
EEERSPSHLRKFSCMFFGAVSCEQQEYAGHPLDSLAVASDSEEDPSAALVPVRSAVGGRK
HAVKSV

Chromosome

Length
Position(start - end)

26253
122325396 - 122351650

Orient to Chromosome

minus

Link

Location : (5:122325396-122351650)
/

Detail Map

name	Pptc7 (ENSMUSG00000038582)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Pptc7 note : PTC7 protein phosphatase homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2444593]

name	Rad9b (ENSMUSG00000038569)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rad9b note : RAD9 homolog B [Source:MGI Symbol;Acc:MGI:2385231]

name	Vps29 (ENSMUSG00000029462)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Vps29 note : vacuolar protein sorting 29 (S. pombe) [Source:MGI Symbol;Acc:MGI:1928344]

name	Pptc7 (ENSMUSG00000038582)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000053426

name	Pptc7 (ENSMUSG00000038582)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119015

name	Rad9b (ENSMUSG00000038569)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000117263

name	Rad9b (ENSMUSG00000038569)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000149600

name	Rad9b (ENSMUSG00000038569)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000049009

name	Rad9b (ENSMUSG00000038569)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000144268

name	Vps29 (ENSMUSG00000029462)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000155671

name	Vps29 (ENSMUSG00000029462)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118830

name	Vps29 (ENSMUSG00000029462)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000117868

name	Vps29 (ENSMUSG00000029462)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000111729

name	Vps29 (ENSMUSG00000029462)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118765

name	Vps29 (ENSMUSG00000029462)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000145821

name	Vps29 (ENSMUSG00000029462)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000154686

name	Rad9b (ENSMUSG00000038569) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_mRNA_predicted:XM_006530307.2 RefSeq_peptide_predicted:XP_006530370.1 Vega_transcript:OTTMUST00000066028 Vega_transcript:Rad9b-002 Uniprot/SPTREMBL:D3Z3W7 UCSC:uc012eda.1 EMBL:AC093473 EMBL:AC113285 GO:GO:0000076 GO:GO:0006281 GO:GO:0008408 GO:GO:0030896 GO:GO:0031573 GO:GO:0071479 GO:GO:0090305 MGI_trans_name:Rad9b-002 Vega_translation:195195 Vega_translation:OTTMUSP00000033000 goslim_goa:GO:0000228 goslim_goa:GO:0003674 goslim_goa:GO:0004518 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005694 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0007049 goslim_goa:GO:0008150 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000033000 OTTT:OTTMUST00000066028 UniParc:UPI000620A958
definition	note : transcript_id=ENSMUST00000117263 protein_id : ENSMUSP00000113868 translation : MFFQHYQWSPFATMSDTDLPLNLNCKLAIKSVLPIFRCLNYLERSVEKCTVVARADKCRVVIQFFGKHGIKRTHNVYFQDSQPLKIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTFSVTPGNFCLKSLSGELLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSEVMHAPLAIYFDFPGKPVVLSVEDMLLEANFILATLVDYPSRTSSPQLLPLSQARRSHPIQSSAPEDKSRVSQTPESISRAAPKRLFPKDSPDSSSAAETKRASAGQDDIFEVPESVVSDMEEERSPSHLRKFSCMFFGAVSCEQQEYAGHPLDSLAVASDSEEDPSAALVPVRSAVGGRKHAVKSV

name	Rad9b (ENSMUSG00000038569) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000066029 Vega_transcript:Rad9b-003 Uniprot/SPTREMBL:F6VRS2 GO:GO:0000076 GO:GO:0006281 GO:GO:0008408 GO:GO:0030896 GO:GO:0031573 GO:GO:0071479 GO:GO:0090305 MGI_trans_name:Rad9b-003 Vega_translation:195196 Vega_translation:OTTMUSP00000033001 goslim_goa:GO:0000228 goslim_goa:GO:0003674 goslim_goa:GO:0004518 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005694 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0007049 goslim_goa:GO:0008150 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000033001 OTTT:OTTMUST00000066029 UniParc:UPI000164C439
definition	codon_start : 3 note : transcript_id=ENSMUST00000149600 protein_id : ENSMUSP00000120843 translation : XCRVVIQFFGKHGIKRTHNVYFQDSQPLKIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTFSVTPGNFCLKSLSGELLVFLHVLWSCIL

name	Rad9b (ENSMUSG00000038569) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS19646.1 Uniprot/SWISSPROT:Q6WBX7 RefSeq_peptide:NP_659161 RefSeq_mRNA:NM_144912.3 RefSeq_peptide_predicted:XP_006530368.1 RefSeq_peptide_predicted:XP_006530369.1 Vega_transcript:OTTMUST00000066027 Vega_transcript:Rad9b-001 Uniprot/SPTREMBL:Q8VC54 UCSC:uc008zkz.1 EMBL:AY297460 EMBL:BC021784 EMBL:CH466529 GO:GO:0000076 GO:GO:0006281 GO:GO:0008408 GO:GO:0030896 GO:GO:0031573 GO:GO:0071479 GO:GO:0090305 MGI_trans_name:Rad9b-001 Vega_translation:195197 Vega_translation:OTTMUSP00000032999 goslim_goa:GO:0000228 goslim_goa:GO:0003674 goslim_goa:GO:0004518 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005694 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0007049 goslim_goa:GO:0008150 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH21784.2 protein_id:AAQ62860.1 protein_id:EDL19687.1 OTTP:OTTMUSP00000032999 OTTT:OTTMUST00000066027 Reactome:R-MMU-1640170 Reactome:R-MMU-176187 Reactome:R-MMU-69481 Reactome:R-MMU-69620 UniParc:UPI00001CE5D9
definition	note : transcript_id=ENSMUST00000049009 protein_id : ENSMUSP00000036177 translation : MLKCGMTGGQVKVFGKAVQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSMFFQHYQWSPFATMSDTDLPLNLNCKLAIKSVLPIFRCLNYLERSVEKCTVVARADKCRVVIQFFGKHGIKRTHNVYFQDSQPLKIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTFSVTPGNFCLKSLSGELLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSEVMHAPLAIYFDFPGKPVVLSVEDMLLEANFILATLVDYPSRTSSPQLLPLSQARRSHPIQSSAPEDKSRVSQTPESISRAAPKRLFPKDSPDSSSAAETKRASAGQDDIFEVPESVVSDMEEERSPSHLRKFSCMFFGAVSCEQQEYAGHPLDSLAVASDSEEDVSG

name	Rad9b (ENSMUSG00000038569) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000066030 Vega_transcript:Rad9b-004 Uniprot/SPTREMBL:D3Z515 EMBL:AC093473 EMBL:AC113285 GO:GO:0000076 GO:GO:0006281 GO:GO:0008408 GO:GO:0030896 GO:GO:0031573 GO:GO:0071479 GO:GO:0090305 MGI_trans_name:Rad9b-004 Vega_translation:195198 Vega_translation:OTTMUSP00000033002 goslim_goa:GO:0000228 goslim_goa:GO:0003674 goslim_goa:GO:0004518 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005694 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0007049 goslim_goa:GO:0008150 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000033002 OTTT:OTTMUST00000066030 UniParc:UPI0001611874
definition	note : transcript_id=ENSMUST00000144268 protein_id : ENSMUSP00000117334 translation : MFFQHYQWSPFATMSDTDLPLNLNCKLAIKSVLPIFRCLNYLERSVEKCTVVARADKCRVVIQF

name	Vps29 (ENSMUSG00000029462) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS39256.1 Uniprot/SWISSPROT:Q9QZ88 RefSeq_peptide:NP_062754 RefSeq_mRNA:NM_019780.1 RefSeq_mRNA_predicted:XM_006530427.2 RefSeq_peptide_predicted:XP_006530490.1 Vega_transcript:OTTMUST00000066064 Vega_transcript:Vps29-001 UCSC:uc008zlb.1 Fantom:1110035A10 Fantom:I830003B15 EMBL:AF193794 EMBL:AK004103 EMBL:AK150330 EMBL:BC005663 GO:GO:0005515 GO:GO:0005737 GO:GO:0005737 GO:GO:0005768 GO:GO:0006886 GO:GO:0006896 GO:GO:0008270 GO:GO:0008565 GO:GO:0010008 GO:GO:0030904 GO:GO:0042147 GO:GO:0043231 GO:GO:0043231 GO:GO:0070062 GO:GO:1990126 MGI_trans_name:Vps29-001 PDB:1Z2W PDB:1Z2X PDB:3PSN PDB:3PSO Vega_translation:195199 Vega_translation:OTTMUSP00000033032 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005768 goslim_goa:GO:0006810 goslim_goa:GO:0007034 goslim_goa:GO:0008150 goslim_goa:GO:0008565 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAF04595.1 protein_id:AAH05663.1 protein_id:BAB23170.1 protein_id:BAE29472.1 OTTP:OTTMUSP00000033032 OTTT:OTTMUST00000066064 Reactome:R-MMU-162582 Reactome:R-MMU-195721 Reactome:R-MMU-3238698 UniParc:UPI0000029F00
definition	note : transcript_id=ENSMUST00000155671 protein_id : ENSMUSP00000121020 translation : MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS

name	Vps29 (ENSMUSG00000029462) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q9QZ88 Vega_transcript:OTTMUST00000066065 Vega_transcript:Vps29-002 UCSC:uc008zlc.1 Fantom:1110035A10 Fantom:I830003B15 EMBL:AF193794 EMBL:AK004103 EMBL:AK150330 EMBL:BC005663 GO:GO:0005515 GO:GO:0005737 GO:GO:0005768 GO:GO:0006886 GO:GO:0006896 GO:GO:0008270 GO:GO:0008565 GO:GO:0010008 GO:GO:0030904 GO:GO:0042147 GO:GO:0043231 GO:GO:0070062 GO:GO:1990126 MGI_trans_name:Vps29-002 PDB:1Z2W PDB:1Z2X PDB:3PSN PDB:3PSO Vega_translation:195200 Vega_translation:OTTMUSP00000033033 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005768 goslim_goa:GO:0006810 goslim_goa:GO:0007034 goslim_goa:GO:0008150 goslim_goa:GO:0008565 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAF04595.1 protein_id:AAH05663.1 protein_id:BAB23170.1 protein_id:BAE29472.1 OTTP:OTTMUSP00000033033 OTTT:OTTMUST00000066065 Reactome:R-MMU-162582 Reactome:R-MMU-195721 Reactome:R-MMU-3238698 UniParc:UPI000002B6C9
definition	note : transcript_id=ENSMUST00000118830 protein_id : ENSMUSP00000113525 translation : MAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS

name	Vps29 (ENSMUSG00000029462) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000066104 Vega_transcript:Vps29-007 Uniprot/SPTREMBL:D3Z645 UCSC:uc008zlb.1 EMBL:AC113285 GO:GO:0005737 GO:GO:0005768 GO:GO:0006886 GO:GO:0006896 GO:GO:0008270 GO:GO:0008565 GO:GO:0030904 GO:GO:0042147 GO:GO:0043231 GO:GO:0070062 GO:GO:1990126 MGI_trans_name:Vps29-007 Vega_translation:195201 Vega_translation:OTTMUSP00000033063 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005768 goslim_goa:GO:0006810 goslim_goa:GO:0007034 goslim_goa:GO:0008150 goslim_goa:GO:0008565 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000033063 OTTT:OTTMUST00000066104 UniParc:UPI00005BE8C3
definition	note : transcript_id=ENSMUST00000117868 protein_id : ENSMUSP00000113345 translation : MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALET

name	Vps29 (ENSMUSG00000029462) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000066066 Vega_transcript:Vps29-003 Uniprot/SPTREMBL:H7BXA2 UCSC:uc008zlb.1 EMBL:AC113285 GO:GO:0005737 GO:GO:0005768 GO:GO:0006886 GO:GO:0006896 GO:GO:0008270 GO:GO:0008565 GO:GO:0030904 GO:GO:0042147 GO:GO:0043231 GO:GO:0070062 GO:GO:1990126 MGI_trans_name:Vps29-003 Vega_translation:195202 Vega_translation:OTTMUSP00000033034 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005768 goslim_goa:GO:0006810 goslim_goa:GO:0007034 goslim_goa:GO:0008150 goslim_goa:GO:0008565 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000033034 OTTT:OTTMUST00000066066 UniParc:UPI000161187C
definition	note : transcript_id=ENSMUST00000111729 protein_id : ENSMUSP00000107358 translation : MEICTFRTGATACRPSLKNSWCQEKSSTSSAPATSAPRRATTISRLWLATSTS

name	Vps29 (ENSMUSG00000029462) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000066105 Vega_transcript:Vps29-008 Uniprot/SPTREMBL:D3YW98 UCSC:uc008zlb.1 EMBL:AC113285 GO:GO:0005737 GO:GO:0005768 GO:GO:0006886 GO:GO:0006896 GO:GO:0008270 GO:GO:0008565 GO:GO:0030904 GO:GO:0042147 GO:GO:0043231 GO:GO:0070062 GO:GO:1990126 MGI_trans_name:Vps29-008 Vega_translation:195203 Vega_translation:OTTMUSP00000033064 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005768 goslim_goa:GO:0006810 goslim_goa:GO:0007034 goslim_goa:GO:0008150 goslim_goa:GO:0008565 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000033064 OTTT:OTTMUST00000066105 UniParc:UPI0001611878
definition	note : transcript_id=ENSMUST00000118765 protein_id : ENSMUSP00000112579 translation : MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDEKHYSIVCADGHPGFYCGHLRLSTNWR

name	Vps29 (ENSMUSG00000029462) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000066067 Vega_transcript:Vps29-004 Uniprot/SPTREMBL:D3YYD5 EMBL:AC113285 GO:GO:0005737 GO:GO:0005768 GO:GO:0006886 GO:GO:0006896 GO:GO:0008270 GO:GO:0008565 GO:GO:0030904 GO:GO:0042147 GO:GO:0043231 GO:GO:0070062 GO:GO:1990126 MGI_trans_name:Vps29-004 Vega_translation:195204 Vega_translation:OTTMUSP00000033035 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005768 goslim_goa:GO:0006810 goslim_goa:GO:0007034 goslim_goa:GO:0008150 goslim_goa:GO:0008565 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000033035 OTTT:OTTMUST00000066067 UniParc:UPI0001611877
definition	note : transcript_id=ENSMUST00000145821 protein_id : ENSMUSP00000123593 translation : MVSPTAAATRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGH

name	Vps29 (ENSMUSG00000029462) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000066068 Vega_transcript:Vps29-005 Uniprot/SPTREMBL:D6RH43 EMBL:AC113285 GO:GO:0005737 GO:GO:0005768 GO:GO:0006886 GO:GO:0006896 GO:GO:0008270 GO:GO:0008565 GO:GO:0030904 GO:GO:0042147 GO:GO:0043231 GO:GO:0070062 GO:GO:1990126 MGI_trans_name:Vps29-005 Vega_translation:195205 Vega_translation:OTTMUSP00000033036 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005768 goslim_goa:GO:0006810 goslim_goa:GO:0007034 goslim_goa:GO:0008150 goslim_goa:GO:0008565 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000033036 OTTT:OTTMUST00000066068 UniParc:UPI0001611876
definition	note : transcript_id=ENSMUST00000154686 protein_id : ENSMUSP00000118991 translation : MDLYIVVADLKLPIELVGVGTRRSAHSAPVQQPAGQV

name
type	STS
link
xref	UniSTS_NUM:165426 UniSTS:AI848390 WI_MRC-RH:669362
definition	note : map_weight=1 standard_name : AI848390

name
type	STS
link
xref	UniSTS_NUM:162412 UniSTS:RH125598
definition	note : map_weight=1 standard_name : RH125598

name
type	misc_feature
link
xref
definition	note : contig AC093473.6 1..67095(-1)

name
type	misc_feature
link
xref
definition	note : contig AC113285.9 1..220891(-1)

name	Rad9b (ENSMUSG00000038569)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000134976 Vega_transcript:OTTMUST00000134976 MGI_trans_name:Rad9b-005 OTTT:OTTMUST00000134976
definition	note : retained_intron note : transcript_id=ENSMUST00000200653

name	Vps29 (ENSMUSG00000029462)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000066069 Vega_transcript:OTTMUST00000066069 MGI_trans_name:Vps29-006 OTTT:OTTMUST00000066069
definition	note : processed_transcript note : transcript_id=ENSMUST00000132785

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rad9b (ENSMUSG00000038569)
Transcript ID	ENSMUST00000117263

Reports
substitution
cSNPs	8
Insertion	18
Deletion	24
SNPs	+1kb 122354268(c.-2618A>G), 122354454(c.-2804T>A), 122354494(c.-2844A>C), 122354497(c.-2847A>C), 122354554(c.-2904C>A), 122354844(c.-3194G>A), 122355496(c.-3846C>A), 122355521(c.-3871T>G), 122356515(c.-4865C>T), 122356573(c.-4923T>C), 122356599(c.-4949G>A), 122357061(c.-5411C>T), 122357072(c.-5422G>T), 122357084(c.-5434G>A), 122357303(c.-5653C>G), 122357448(c.-5798T>C), 122357489(c.-5839G>C), 122358208(c.-6558C>T), 122358466(c.-6816A>G), 122358843(c.-7193C>T), 122358930(c.-7280T>C), 5'UTR 122323610(c.660A>G), 122324097(c.173T>C), 122324186(c.84G>A), 122352553(c.-68C>T), CDS 122325929(c.984C>T), 122331568(c.834A>G), 122331693(c.709C>G), 122339749(c.395T>C), 122351268(c.196G>T), 122351313(c.151G>A), 122351326(c.138G>A), 122351613(c.38C>T), 3'UTR INTRON 122324468(c.46-244T>C), 122324635(c.46-411C>T), 122324732(c.46-508G>A), 122324736(c.46-512A>G), 122324933(c.45+418A>T), 122325002(c.45+349T>C), 122325139(c.45+212G>A), 122325572(c.1033-108T>C), 122325599(c.1033-135T>C), 122325684(c.1032+197T>G), 122325759(c.1032+122A>G), 122325831(c.1032+50A>G), 122326153(c.934-174T>C), 122326180(c.934-201T>C), 122326255(c.934-276A>G), 122326331(c.934-352G>A), 122326469(c.934-490G>T), 122326768(c.934-789T>C), 122326810(c.934-831T>G), 122326886(c.934-907T>A), 122326940(c.934-961T>C), 122327443(c.934-1464C>A), 122327603(c.934-1624T>A), 122327998(c.934-2019G>A), 122328024(c.934-2045G>C), 122328103(c.934-2124A>G), 122328133(c.934-2154T>C), 122328175(c.934-2196C>G), 122328201(c.934-2222T>A), 122328341(c.934-2362C>T), 122328376(c.934-2397C>A), 122328389(c.934-2410G>A), 122328412(c.934-2433G>A), 122328434(c.934-2455C>G), 122328612(c.934-2633C>A), 122328654(c.934-2675C>T), 122328797(c.933+2672T>C), 122330024(c.933+1445T>C), 122330115(c.933+1354A>G), 122330421(c.933+1048C>G), 122330853(c.933+616C>T), 122330912(c.933+557C>T), 122331148(c.933+321A>G), 122331191(c.933+278C>A), 122331214(c.933+255G>A), 122331237(c.933+232T>C), 122332018(c.705-321T>C), 122332270(c.705-573T>C), 122332344(c.705-647T>C), 122333731(c.585-316G>A), 122333771(c.585-356T>A), 122333933(c.584+329A>T), 122335379(c.413-863T>C), 122335520(c.413-1004G>T), 122335700(c.413-1184T>A), 122335907(c.413-1391C>T), 122335998(c.413-1482C>T), 122336409(c.413-1893T>C), 122336548(c.413-2032A>G), 122336629(c.413-2113C>A), 122337011(c.413-2495T>C), 122337260(c.412+2472T>A), 122337316(c.412+2416C>T), 122337479(c.412+2253G>A), 122337582(c.412+2150G>A), 122337880(c.412+1852A>C), 122338014(c.412+1718C>A), 122338371(c.412+1361C>A), 122338586(c.412+1146A>G), 122338903(c.412+829T>C), 122338950(c.412+782C>A), 122338957(c.412+775A>T), 122338972(c.412+760T>G), 122338973(c.412+759A>T), 122338999(c.412+733A>G), 122339152(c.412+580A>G), 122339462(c.412+270C>T), 122339556(c.412+176A>G), 122339575(c.412+157A>G), 122339602(c.412+130A>G), 122340030(c.306-192T>C), 122340048(c.306-210A>C), 122340072(c.306-234T>G), 122340103(c.306-265T>C), 122340195(c.306-357G>A), 122340374(c.306-536C>A), 122340966(c.306-1128G>A), 122341066(c.306-1228A>T), 122341067(c.306-1229G>C), 122341068(c.306-1230G>A), 122341133(c.306-1295T>A), 122341135(c.306-1297C>A), 122341159(c.306-1321G>A), 122341192(c.306-1354G>A), 122341247(c.306-1409G>C), 122341342(c.306-1504A>T), 122341414(c.306-1576G>A), 122341601(c.306-1763T>C), 122342384(c.305+1814C>T), 122342674(c.305+1524G>A), 122342835(c.305+1363T>C), 122343307(c.305+891C>A), 122343338(c.305+860G>A), 122343355(c.305+843C>T), 122343412(c.305+786T>C), 122343431(c.305+767A>G), 122343449(c.305+749T>A), 122343611(c.305+587C>G), 122343952(c.305+246T>C), 122344011(c.305+187T>C), 122344188(c.305+10C>G), 122344389(c.206-92T>C), 122344554(c.206-257A>C), 122344717(c.206-420G>A), 122344729(c.206-432T>C), 122344789(c.206-492T>C), 122344800(c.206-503G>A), 122344956(c.206-659G>A), 122345017(c.206-720A>T), 122345083(c.206-786A>C), 122345290(c.206-993A>G), 122345398(c.206-1101T>A), 122345532(c.206-1235G>A), 122346022(c.206-1725T>A), 122346043(c.206-1746G>A), 122346216(c.206-1919G>A), 122346286(c.206-1989C>T), 122346441(c.206-2144C>T), 122346451(c.206-2154T>C), 122346520(c.206-2223C>A), 122346556(c.206-2259G>T), 122346582(c.206-2285G>T), 122346583(c.206-2286T>C), 122346660(c.206-2363A>G), 122346690(c.206-2393A>G), 122346779(c.206-2482G>A), 122346951(c.206-2654C>G), 122346982(c.206-2685A>G), 122347121(c.206-2824G>A), 122347341(c.206-3044T>G), 122347450(c.206-3153G>A), 122347476(c.206-3179C>A), 122347534(c.206-3237G>T), 122347653(c.206-3356C>G), 122348037(c.205+3222T>C), 122348042(c.205+3217G>A), 122348049(c.205+3210G>T), 122348482(c.205+2777C>T), 122348963(c.205+2296G>A), 122349001(c.205+2258G>A), 122349221(c.205+2038C>G), 122349255(c.205+2004G>T), 122349282(c.205+1977T>C), 122349292(c.205+1967T>C), 122350004(c.205+1255T>C), 122350183(c.205+1076T>C), 122350299(c.205+960T>C), 122350350(c.205+909C>T), 122350641(c.205+618A>G), 122350765(c.205+494A>T), 122350869(c.205+390G>A), 122351201(c.205+58C>T), 122351219(c.205+40G>A), 122351447(c.91-74G>A), 122351828(c.-60-118T>C), 122352524(c.-61+22G>A), 122352762(c.-129-148C>G), 122352899(c.-129-285A>G), 122352932(c.-129-318A>G), 122353108(c.-129-494A>G), 122353195(c.-129-581A>G), 122353554(c.-130+585G>A), 122353588(c.-130+551A>T), 122353810(c.-130+329A>G), 122353891(c.-130+248G>A), -1kb 122318352(c.7044A>G), 122318492(c.6904A>G), 122318584(c.6812T>A), 122318648(c.6748A>G), 122319044(c.6352T>C), 122319081(c.6315C>T), 122319251(c.6145C>G), 122319252(c.6144A>G), 122319255(c.6141A>G), 122319496(c.5900T>C), 122319525(c.5871G>A), 122319648(c.5748A>G), 122319942(c.5454C>T), 122319966(c.5430G>C), 122320097(c.5299A>G), 122320270(c.5126A>G), 122320545(c.4851C>T), 122322237(c.3159G>T),
Insertions	+1kb 122354969 (c.-3320_-3319insGG), 122355060 (c.-3411_-3410insGTCCGTCCCC), 122356302 (c.-4654_-4653dupGT), 122357272 (c.-5623dupA), 5'UTR CDS 3'UTR INTRON 122328724 (c.933+2743_933+2744dupTT), 122330283 (c.933+1185_933+1186insTTGTTTG), 122330351 (c.933+1117_933+1118insA), 122333780 (c.585-366_585-365insAAAA), 122337513 (c.412+2217_412+2218dupCA), 122338828 (c.412+903_412+904insGG), 122339486 (c.412+245dupT), 122340118 (c.306-281_306-280insCG), 122340930 (c.306-1093_306-1092insT), 122342493 (c.305+1704_305+1705insCAGCAT), 122346792 (c.206-2496_206-2495insA), 122348997 (c.205+2261_205+2262insC), 122350806 (c.205+452_205+453insAG), 122350921 (c.205+337dupA), -1kb
Deletions	+1kb 122354236 (c.-2588_-2587delGG), 122354239 (c.-2591_-2590delGG), 122354316 (c.-2668_-2667delAA), 122355547 (c.-3899_-3898delTT), 122357042 (c.-5396_-5393delGAAA), 122358289 (c.-6645_-6640delCTTTAA), 5'UTR 122323686 (c.578_583delAGCGGT), CDS 3'UTR INTRON 122324559 (c.46-336delC), 122326045 (c.934-69_934-67delCCA), 122328670 (c.934-2692delA), 122328881 (c.933+2587delT), 122329593 (c.933+1872_933+1875delAAAA), 122332001 (c.705-308_705-305delTTTT), 122332759 (c.704+536delA), 122335227 (c.413-715_413-712delACTT), 122338947 (c.412+784delG), 122339019 (c.412+709_412+712delTCCT), 122339047 (c.412+683_412+684delGT), 122339182 (c.412+547_412+549delCCA), 122345138 (c.206-843_206-842delAA), 122347038 (c.206-2749_206-2742delATACATAC), 122349075 (c.205+2183delG), 122349490 (c.205+1766_205+1768delGCT), -1kb 122319368 (c.6027delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	3
non-synonymous num	5
synonymous substitutions	122325929 (p.Ala328Ala), 122331568 (p.Glu278Glu), 122351326 (p.Val46Val),
non-synonymous substitutions	122331693 (p.His237Asp), 122339749 (p.Leu132Ser), 122351268 (p.Gly66Cys), 122351313 (p.Val51Ile), 122351613 (p.Thr13Met),
B6 transcript (ENSMUST00000117263)	MFFQHYQWSPFATMSDTDLPLNLNCKLAIKSVLPIFRCLNYLERSVEKCTVVARADKCRV VIQFFGKHGIKRTHNVYFQDSQPLKIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTF SVTPGNFCLKSLSGELLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSE VMHAPLAIYFDFPGKPVVLSVEDMLLEANFILATLVDYPSRTSSPQLLPLSQARRSHPIQ SSAPEDKSRVSQTPESISRAAPKRLFPKDSPDSSSAAETKRASAGQDDIFEVPESVVSDM EEERSPSHLRKFSCMFFGAVSCEQQEYAGHPLDSLAVASDSEEDPSAALVPVRSAVGGRK HAVKSV*
MSMv4 transcript	MFFQHYQWSPFAMMSDTDLPLNLNCKLAIKSVLPIFRCLNYLERSVEKCTIVARADKCRV VIQFFCKHGIKRTHNVYFQDSQPLKIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTF SVTPGNFCLKSSSGELLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSE VMHAPLAIYFDFPGKPVVLSVEDMLLEANFILATLVDYPSRTSSPQLLPLSQARRSDPIQ SSAPEDKSRVSQTPESISRAAPKRLFPKDSPDSSSAAETKRASAGQDDIFEVPESVVSDM EEERSPSHLRKFSCMFFGAVSCEQQEYAGHPLDSLAVASDSEEDPSAALVPVRSAVGGRK HAVKSV*
homology	98.64 (367 / 367)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rad9b (ENSMUSG00000038569)
Transcript ID	ENSMUST00000117263


..........GGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTG
TTTGCTAGGCCACCTTTTTAAAAGGTTGTCTGCACAAGGATAATCTGTGAAAAACGCAAC
GCGTGCCCAGCAGCCAGTGAGGTGCCTTCACTTTAACCTTCATCAGGACAAACAGCAGTC
CCCCCCCCCAACTTTAGAGAGCAAAGAGTGCCTTCGAAAATCGGATTACAAGGACGTGTC
TGCACAGAAAAGTCGTAGGGACAGCAATCTATTGGGGGGGACGGGCCTAAAGGTCTGATG
CAGACTGGGTAAGCTAAGGCTCTCCGAACAACCCCGCGCATCTCCGCAGGCTCCAAACGA
TCCCCACGACATCGCTCAATGGGGCCGCAGCGGCCACAAGAGACGAGCAGTCCCCTTTCC
GGGTCCCCGTCCGGAGTGGCGGCCAGTGCGACGGCTACTTCGCGCTCTGCCCCGAGGCCG
GCTACCCCCAGCAAGCCGGGAAGGACCAGGAGGGAAGAGACGTGCGGTCACACCGACTGC
CGGAGCCGATCTCGTGACCGGGTCCGGCCGCCGGGTCCGCCTCGCACGCCCTCTGGCCGC
TGGGGCGAGGGGGCGACATCAGGCCGAGCCGCACCCTCAACCAGCCGCGGTCCTCCCGTT
CCAACTCCGCGGCCACCCGGATCCTCCTAGCGCCCCCACCCCACTCCCTCAACCGGACGC
CGCAGCATCCCGGCCCCACCCGGGTCGCCGCCGCCGTGGGGCTCACCATCCTGTCACCAG
GGCTCCGTACAATCACCACGAACGCCGCCGCCCTCTTCCTCAGGCTCCTCGGTCGACCCG
CCCACTTCTTCCGCCACCAATGAGACGCGAAGTTGGCAAGAGCCTGTCTTACGGGGGCCC
GTAAGGGTCATTTCCCGTCAAGGGAAAAAAAAAAAAAACCCGGCGCTGCAAGAAATCGCT
CGTGGGCGGGGCAAGGGAAAGGCTGAGCTCGCGGAAAGTGCGGGGGCAAC
ATCCGGGCACCCGCGGCTGGCGCGCTTGCGCCCTCCATGCCTGCTCTGCCCGTAGCCATGCTGAAGTGCGGGATGACGGGCGGCCAGGTGAAAG
GTGGAGCGGCCATTCTTGCTTTGCT..........AACGCACCTTTCTTTTCCTCCATAG
TATTTGGGAAAGCAGTACAAACGCTATCACGAGTGAGCGATGAGCTGTGGCTAGACCCATCTGAGAAAG
GTGTAAGTTAAAAGGCCTGCTATGT..........AAATAGCTCACTTATTCCTTTCCAG
CTTGCTCTGAGATCTGTGAATTCTTGTCATTCCACGTATGGCTACGTCCTGTTTTCATCTATGTTTTTTCAACATTATCAGTGGTCACCCTTTGCCATGATGAGTGATACTGACTTACCACTGAATTTAAATTGCAAATTGGCAATAAAG
GTAAAAACAGTTGATTTTCTCTTAT..........TGTTTACGATGTGTTTGTATTGCAG
TCAGTTCTGCCAATCTTTAGATGTCTGAATTACCTTGAAAGAAGTGTAGAGAAGTGCACAATAGTCGCCAGAGCGGATAAATGCAGAGTCGTCATTCAGTTCTTCTGCAAGCATG
GTAGGTGCAGCAGAAAGTGGTGTGT..........AAGAGCTTGCTTTGTTCTCTTTAAG
GTATTAAAAGAACTCACAATGTGTATTTCCAAGACAGCCAGCCCTTGAAAATTATCTTCGAAAAGAGTCTGTGTGCGAATATCCTGATGATTAAACCAAG
GTAAAGGGTGTCCTGATGCCTCTTT..........TAATACTTTTGTCACCGTTTTACAG
ACTGCTGACTGAGGCCATTGCTCTTCTGACATCAAATCAAGAGGAAGTCACCTTCTCTGTTACTCCAGGGAACTTTTGCCTCAAGAGTTCGAGTGGGGAATTGCTGG
GTAAGGATGATGCCTGCCTTGGGAT..........ATCTTTATTTTCCTACATCAACCAG
ATTTGACCAGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTGATACCGAGATAACATTTTGCTTTAAAGAACTGAAG
GTAAGCAAACACCAGTGTGAGAGTG..........CCACCTTCTGCTCCTCTCCCTGCAG
GGGATCCTCACCTTCTCAGAAGTGATGCACGCACCTCTAGCCATCTACTTTGACTTTCCTGGAAA
GTAGGTCCTGAGAACTCTGGGTTTG..........CTGGTTTGTGCTGATTGTCTTCTAG
ACCGGTTGTTTTGAGTGTTGAAGACATGCTCTTGGAAGCAAACTTTATCTTGGCCACGTTAGTGGATTATCCGAGTAGAACATCTTCACCACAGTTACTGCCCCTTTCCCAGGCACGAAG
GTAATGCTGGGGGCTTTTTATTCTT..........CCATCCCATCCCTTTAAATGCCCAG
GTCAGACCCCATACAGTCCAGTGCCCCGGAGGATAAAAGCAGAGTCAGTCAGACCCCAGAGAGCATCTCTCGAGCAGCGCCCAAAAGACTATTTCCCAAGGATTCTCCTGACAGCAGCTCTGCAGCTGAGACCAAGAGAGCCAGCGCCGGCCAGGATGACATCTTCGAAGTGCCTGAAAGTGTTGTTAGTGACATGGAGGAAGAGCGGAGCCCTTCACACCTCAGGAAG
GTAGGATTGCTGTGCTGAGGTGGGC..........GACACTCTTTTGTTTTCCTTTCTAG
TTTTCCTGCATGTTCTTTGGAGCTGTATCTTGTGAACAGCAAGAGTATGCTGGCCACCCCTTGGACAGCCTGGCAGTAGCAAGCGACAGTGAGGAGGAC
GTGAGTGGCTGAGCACCCATGCTAA..........TATATGATACAATTTTATTTCCCAG
CCCTCAGCTGCTCTGGTTCCTGTGCGCTCTGCAGTGGGAGGCAGAAAGCATGCAGTGAAGTCGGTGTGAGTCATCTGCACACAGCAGCCAGAGCTCAGCCTGGAGAGGAACAAG
GTAAGGTGGCGGGGGACAAATGCCT..........ACAGTTTATTTAAATGTATTTACAG
AACTATTCCTGCATAAGTTATATTTCCAACATCGATTCAGGTCATTGCCTCTGGTAGGACGCACGATGATAGTCTCAACAGAAAAGGCAGCGCATCAGTACACACAGACTCAGACTTGCTTCGTCATCTACTCATCGTTGCCACAGACTACCTACTAACAGTTATGTTTTGACATGGACACTGCTTTATTGAGAAGTTCAATTTTGTGATAAATTTACTTTTTTGAAAGAAATAGAATCCAAATGTCTTCTGTTTCATATTATGTTGTTTTATGTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTGCTATTGCAAATTTTTTTAAATGTAAAACTGTGACAATTTCCAAGAAAGTGAGTGTTACAACTTTGCCAAAGAGAGCTGCTGTACAGTGACACAGAGCCATGAACCTACTCAGACACGCACAGCTTCAGCCAATCTCGCCAATCCCGCCAGCCGCCTCCAAACCACTCCTGCCCTGTTTCCATCTGCTGGCTACTCTATCCAGAACAAAGGCAGCGGCAGCGGCAGCGGTGGAGGGCACTCTCCTGCCTTGGAGCTTATACCCAGTCTCTCCAGACCCAGCCCAACCCAGACACATACCTGGAATGGATTCTCTGTGAGTGAGTAGCCAAGCACACAGATAACTCGGGATACATGACTTGTTCCCCTCACTTCTCTCTGTTTGTAAGACTCTAGCTACTTCATCTCCACTTGATAATTTTATACTTTTTGTGCGCAGGCAGCTTAAGTTCATAGGAAGAAATAAGGTTCTGATATGTTTAGAGTGCACATTTTTAAAACAGAACAAAATAAAAATTTCAAGCATGTGATAAAAATAGTGATTTTTTTATAATACAGTATTGCTTTATAAATATAGATGGAAAAGCTATAAACTTTACTGGTCTTTGGTGCATCCAGAGGGATAAATAATTTGCCATTTGTAAATTAAAACCCAAATTTTCTCTTTTGTTATAAAAGTTCACTCTGTGAGACAAA
TATGAGTGCTTACATTGCTTGATTTAAAATACAACTCACGCGCACACCAGGTTCCAGATC
AGACCTGGCGAGGGGTGTGTGATGGAGCCCCTGGCCTCAGTGAGTGTGAGCAGCGTTTGC
TCTGCCTGACCTCTCGACAGTTATAAAATTAAGTGTGTAACAAAAAGGACAGGGAGAAGC
AAATGGAATATACGATGTCACCAGTCCACACGCCAGGCCTGAGGAACTGTCACTGAATCC
TGACGTCTGCCTCGTGGTTTTCAGTTTACTAGAACAGCCATACTGCCTGTCTGTTTCTTA
CAATCACTGCTCAGAAAAGTGAGTTGACTAAAAGTAAGTTGTATAAAACACACCAATCTA
CTTTTACAAACATTGGTTGATGGGCTAAATGAGAGCAGAAAAAAGCCAGTGACTTGACCA
GCTCTGCTCTTAGCAGGAATTAAATGTCGGCATTGGAAAATTAATGCAAAATATATCCAG
ATTGTAAGGCTACAACACCTCTGACCAAGAACTAATTACAAACCACACAGAAGAGCTGAA
GTCCTCAGTCCTAGAGTCACACACCCCATCTGGATGCAACCTTACTGTTTTAAACACAGA
CACTGCAAAGAGTTTGTGCAAAATAAATACCCACCACGTGCCCCTCACGCCCCAGGATCA
ACAGAGTGCGACATCTCCTTATCCAGTCTCCCTCCATACCAGAGAACTAACTCAGTGTTG
TCAGGTTAGGGGAGTTAAGGCATTCTGACATGTAATTAAAGGTGATTCAAAATAGGAATC
TAACATTATGCCAATTTAGGAATAGTAGATAAATTACTGAAGAGCTTACAAATGAGTAAC
TCATTCTCATGAATGAATGCCTGTTACAAGCATGATGCACTGAGAGCACTGACATGTACA
TGGTACATGGTAAACAGTTTAAATAAAACAGAGACAGCTACTCAAATATACAAACGCACA
GACAGACAAAACCTTTTAAAAACAATTTGAGGTAACCTCA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTG TTTGCTAGGCCACCTTTTTAAAAGGTTGTCTGCACAAGGATAATCTGTGAAAAACGCAAC GCGTGCCCAGCAGCCAGTGAGGTGCCTTCACTTTAACCTTCATCAGGACAAACAGCAGTC CCCCCCCCCAACTTTAGAGAGCAAAGAGTGCCTTCGAAAATCGGATTACAAGGACGTGTC TGCACAGAAAAGTCGTAGGGACAGCAATCTATTGGGGGGGACGGGCCTAAAGGTCTGATG CAGACTGGGTAAGCTAAGGCTCTCCGAACAACCCCGCGCATCTCCGCAGGCTCCAAACGA TCCCCACGACATCGCTCAATGGGGCCGCAGCGGCCACAAGAGACGAGCAGTCCCCTTTCC GGGTCCCCGTCCGGAGTGGCGGCCAGTGCGACGGCTACTTCGCGCTCTGCCCCGAGGCCG GCTACCCCCAGCAAGCCGGGAAGGACCAGGAGGGAAGAGACGTGCGGTCACACCGACTGC CGGAGCCGATCTCGTGACCGGGTCCGGCCGCCGGGTCCGCCTCGCACGCCCTCTGGCCGC TGGGGCGAGGGGGCGACATCAGGCCGAGCCGCACCCTCAACCAGCCGCGGTCCTCCCGTT CCAACTCCGCGGCCACCCGGATCCTCCTAGCGCCCCCACCCCACTCCCTCAACCGGACGC CGCAGCATCCCGGCCCCACCCGGGTCGCCGCCGCCGTGGGGCTCACCATCCTGTCACCAG GGCTCCGTACAATCACCACGAACGCCGCCGCCCTCTTCCTCAGGCTCCTCGGTCGACCCG CCCACTTCTTCCGCCACCAATGAGACGCGAAGTTGGCAAGAGCCTGTCTTACGGGGGCCC GTAAGGGTCATTTCCCGTCAAGGGAAAAAAAAAAAAAACCCGGCGCTGCAAGAAATCGCT CGTGGGCGGGGCAAGGGAAAGGCTGAGCTCGCGGAAAGTGCGGGGGCAAC
1	EXON 1	122354139	122354232	-	-	94	ATCCGGGCACCCGCGGCTGGCGCGCTTGCGCCCTCCATGCCTGCTCTGCCCGTAGCCATG CTGAAGTGCGGGATGACGGGCGGCCAGGTGAAAG
	INTRON 1 - 2	122352615	122354138			1524	GTGGAGCGGCCATTCTTGCTTTGCT..........AACGCACCTTTCTTTTCCTCCATAG
2	EXON 2	122352546	122352614	-	-	69	TATTTGGGAAAGCAGTACAAACGCTATCACGAGTGAGCGATGAGCTGTGGCTAGACCCAT CTGAGAAAG
	INTRON 2 - 3	122351711	122352545			835	GTGTAAGTTAAAAGGCCTGCTATGT..........AAATAGCTCACTTATTCCTTTCCAG
3	EXON 3	122351561	122351710	-	0	150	CTTGCTCTGAGATCTGTGAATTCTTGTCATTCCACGTATGGCTACGTCCTGTTTTCATCT ATGTTTTTTCAACATTATCAGTGGTCACCCTTTGCCATGATGAGTGATACTGACTTACCA CTGAATTTAAATTGCAAATTGGCAATAAAG
	INTRON 3 - 4	122351374	122351560			187	GTAAAAACAGTTGATTTTCTCTTAT..........TGTTTACGATGTGTTTGTATTGCAG
4	EXON 4	122351259	122351373	0	1	115	TCAGTTCTGCCAATCTTTAGATGTCTGAATTACCTTGAAAGAAGTGTAGAGAAGTGCACA ATAGTCGCCAGAGCGGATAAATGCAGAGTCGTCATTCAGTTCTTCTGCAAGCATG
	INTRON 4 - 5	122344298	122351258			6961	GTAGGTGCAGCAGAAAGTGGTGTGT..........AAGAGCTTGCTTTGTTCTCTTTAAG
5	EXON 5	122344198	122344297	1	2	100	GTATTAAAAGAACTCACAATGTGTATTTCCAAGACAGCCAGCCCTTGAAAATTATCTTCG AAAAGAGTCTGTGTGCGAATATCCTGATGATTAAACCAAG
	INTRON 5 - 6	122339839	122344197			4359	GTAAAGGGTGTCCTGATGCCTCTTT..........TAATACTTTTGTCACCGTTTTACAG
6	EXON 6	122339732	122339838	2	1	107	ACTGCTGACTGAGGCCATTGCTCTTCTGACATCAAATCAAGAGGAAGTCACCTTCTCTGT TACTCCAGGGAACTTTTGCCTCAAGAGTTCGAGTGGGGAATTGCTGG
	INTRON 6 - 7	122334517	122339731			5215	GTAAGGATGATGCCTGCCTTGGGAT..........ATCTTTATTTTCCTACATCAACCAG
7	EXON 7	122334410	122334516	1	0	107	ATTTGACCAGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTGACTTCTTTC AGGTTGGACTTGATACCGAGATAACATTTTGCTTTAAAGAACTGAAG
	INTRON 7 - 8	122334327	122334409			83	GTAAGCAAACACCAGTGTGAGAGTG..........CCACCTTCTGCTCCTCTCCCTGCAG
8	EXON 8	122334262	122334326	0	2	65	GGGATCCTCACCTTCTCAGAAGTGATGCACGCACCTCTAGCCATCTACTTTGACTTTCCT GGAAA
	INTRON 8 - 9	122333416	122334261			846	GTAGGTCCTGAGAACTCTGGGTTTG..........CTGGTTTGTGCTGATTGTCTTCTAG
9	EXON 9	122333296	122333415	2	2	120	ACCGGTTGTTTTGAGTGTTGAAGACATGCTCTTGGAAGCAAACTTTATCTTGGCCACGTT AGTGGATTATCCGAGTAGAACATCTTCACCACAGTTACTGCCCCTTTCCCAGGCACGAAG
	INTRON 9 - 10	122331698	122333295			1598	GTAATGCTGGGGGCTTTTTATTCTT..........CCATCCCATCCCTTTAAATGCCCAG
10	EXON 10	122331469	122331697	2	0	229	GTCAGACCCCATACAGTCCAGTGCCCCGGAGGATAAAAGCAGAGTCAGTCAGACCCCAGA GAGCATCTCTCGAGCAGCGCCCAAAAGACTATTTCCCAAGGATTCTCCTGACAGCAGCTC TGCAGCTGAGACCAAGAGAGCCAGCGCCGGCCAGGATGACATCTTCGAAGTGCCTGAAAG TGTTGTTAGTGACATGGAGGAAGAGCGGAGCCCTTCACACCTCAGGAAG
	INTRON 10 - 11	122325980	122331468			5489	GTAGGATTGCTGTGCTGAGGTGGGC..........GACACTCTTTTGTTTTCCTTTCTAG
11	EXON 11	122325881	122325979	0	0	99	TTTTCCTGCATGTTCTTTGGAGCTGTATCTTGTGAACAGCAAGAGTATGCTGGCCACCCC TTGGACAGCCTGGCAGTAGCAAGCGACAGTGAGGAGGAC
	INTRON 11 - 12	122325465	122325880			416	GTGAGTGGCTGAGCACCCATGCTAA..........TATATGATACAATTTTATTTCCCAG
12	EXON 12	122325351	122325464	0	-	114	CCCTCAGCTGCTCTGGTTCCTGTGCGCTCTGCAGTGGGAGGCAGAAAGCATGCAGTGAAG TCGGTGTGAGTCATCTGCACACAGCAGCCAGAGCTCAGCCTGGAGAGGAACAAG
	INTRON 12 - 13	122324225	122325350			1126	GTAAGGTGGCGGGGGACAAATGCCT..........ACAGTTTATTTAAATGTATTTACAG
13	EXON 13	122323223	122324224	-	-	1002	AACTATTCCTGCATAAGTTATATTTCCAACATCGATTCAGGTCATTGCCTCTGGTAGGAC GCACGATGATAGTCTCAACAGAAAAGGCAGCGCATCAGTACACACAGACTCAGACTTGCT TCGTCATCTACTCATCGTTGCCACAGACTACCTACTAACAGTTATGTTTTGACATGGACA CTGCTTTATTGAGAAGTTCAATTTTGTGATAAATTTACTTTTTTGAAAGAAATAGAATCC AAATGTCTTCTGTTTCATATTATGTTGTTTTATGTTTTTCTTTTCTTTTTTTTTTTTTTT TTTTTTTTGCTATTGCAAATTTTTTTAAATGTAAAACTGTGACAATTTCCAAGAAAGTGA GTGTTACAACTTTGCCAAAGAGAGCTGCTGTACAGTGACACAGAGCCATGAACCTACTCA GACACGCACAGCTTCAGCCAATCTCGCCAATCCCGCCAGCCGCCTCCAAACCACTCCTGC CCTGTTTCCATCTGCTGGCTACTCTATCCAGAACAAAGGCAGCGGCAGCGGCAGCGGTGG AGGGCACTCTCCTGCCTTGGAGCTTATACCCAGTCTCTCCAGACCCAGCCCAACCCAGAC ACATACCTGGAATGGATTCTCTGTGAGTGAGTAGCCAAGCACACAGATAACTCGGGATAC ATGACTTGTTCCCCTCACTTCTCTCTGTTTGTAAGACTCTAGCTACTTCATCTCCACTTG ATAATTTTATACTTTTTGTGCGCAGGCAGCTTAAGTTCATAGGAAGAAATAAGGTTCTGA TATGTTTAGAGTGCACATTTTTAAAACAGAACAAAATAAAAATTTCAAGCATGTGATAAA AATAGTGATTTTTTTATAATACAGTATTGCTTTATAAATATAGATGGAAAAGCTATAAAC TTTACTGGTCTTTGGTGCATCCAGAGGGATAAATAATTTGCCATTTGTAAATTAAAACCC AAATTTTCTCTTTTGTTATAAAAGTTCACTCTGTGAGACAAA
	3' upstream sequence						TATGAGTGCTTACATTGCTTGATTTAAAATACAACTCACGCGCACACCAGGTTCCAGATC AGACCTGGCGAGGGGTGTGTGATGGAGCCCCTGGCCTCAGTGAGTGTGAGCAGCGTTTGC TCTGCCTGACCTCTCGACAGTTATAAAATTAAGTGTGTAACAAAAAGGACAGGGAGAAGC AAATGGAATATACGATGTCACCAGTCCACACGCCAGGCCTGAGGAACTGTCACTGAATCC TGACGTCTGCCTCGTGGTTTTCAGTTTACTAGAACAGCCATACTGCCTGTCTGTTTCTTA CAATCACTGCTCAGAAAAGTGAGTTGACTAAAAGTAAGTTGTATAAAACACACCAATCTA CTTTTACAAACATTGGTTGATGGGCTAAATGAGAGCAGAAAAAAGCCAGTGACTTGACCA GCTCTGCTCTTAGCAGGAATTAAATGTCGGCATTGGAAAATTAATGCAAAATATATCCAG ATTGTAAGGCTACAACACCTCTGACCAAGAACTAATTACAAACCACACAGAAGAGCTGAA GTCCTCAGTCCTAGAGTCACACACCCCATCTGGATGCAACCTTACTGTTTTAAACACAGA CACTGCAAAGAGTTTGTGCAAAATAAATACCCACCACGTGCCCCTCACGCCCCAGGATCA ACAGAGTGCGACATCTCCTTATCCAGTCTCCCTCCATACCAGAGAACTAACTCAGTGTTG TCAGGTTAGGGGAGTTAAGGCATTCTGACATGTAATTAAAGGTGATTCAAAATAGGAATC TAACATTATGCCAATTTAGGAATAGTAGATAAATTACTGAAGAGCTTACAAATGAGTAAC TCATTCTCATGAATGAATGCCTGTTACAAGCATGATGCACTGAGAGCACTGACATGTACA TGGTACATGGTAAACAGTTTAAATAAAACAGAGACAGCTACTCAAATATACAAACGCACA GACAGACAAAACCTTTTAAAAACAATTTGAGGTAACCTCA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rad9b (ENSMUSG00000038569)
Transcript ID	ENSMUST00000117263

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 367 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information